Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

5886242 .. 5887552

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCATCCCAGAAGCAGAGCTACAGAGCTGGTGAAGCCAAGGGCCAAGCTGAGGAAAAGGCTGGCCAGATGATGGGCTCAGTAGGGGACACAGCCCGAGAAGGAAGGGAGAGGGCCCAAGAAGGAAGGGACAAGGCCCAAGACACAACGCAAGCAACAAGGGACAAGACATACGAGACAGGCCAAGCAGCCAAGGACAAAACCCAGGGAGCTACCTACCAAGTCAAAGACAAGGCCGTAGAGAAGGCAGAGGCTGCAAAACAGAGGGCAGAAGAAGCAGCCCGGAAGGCCAGAGAGACAGCCGAGCATGGCAAAGAGAAAACCAGTGGGGTACTGCAGCAGACTGGAGAACAGATGAAGAACATGACTCAGGGTGCTGCTGATGCTGTGAAAAGCACTTTTGGGCTGGCCAAGAATGATGAGGAGAAAGATGAAACTGGGCTTTCTGATAAGAAGGCTGGCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

157

Amino Acids

16.73

Weight (kDa)

7.83

Isoelectric Point (pI)

14.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	64, 408
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	52, 73
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	4 cut(s)	21, 29, 50, 212
AluI	AGCT	4 cut(s)	21, 29, 50, 212
Alw26I	GTCTC	2 cut(s)	170, 290
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	8 cut(s)	43, 64, 114, 135, 181, 234, 288, 408
ApaI	GGGCCC	1 cut(s)	118
ApeKI	GCWGC	5 cut(s)	188, 254, 278, 337, 377
AspS9I	GGNCC	4 cut(s)	43, 114, 115, 136
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	2 cut(s)	66, 410
BanII	GRGCYC	2 cut(s)	80, 118
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	200, 241, 290, 349, 364
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	170, 290
BfmI	CTRYAG	2 cut(s)	22, 335
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	189, 255, 279, 338, 378
BlsI	GCNGC	5 cut(s)	190, 256, 280, 339, 379
Bme1390I	CCNGG	2 cut(s)	206, 283
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	4 cut(s)	43, 114, 115, 136
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	206, 283
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	14, 373
BmuI	ACTGGG	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	39, 192, 204, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 73
Bse1I	ACTGG	4 cut(s)	324, 349, 442, 469
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	4 cut(s)	39, 192, 204, 205
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	2 cut(s)	52, 73
BseMII	CTCAG	3 cut(s)	42, 93, 383
BseNI	ACTGG	4 cut(s)	324, 349, 442, 469
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	5 cut(s)	200, 241, 290, 349, 364
BshFI	GGCC	8 cut(s)	45, 66, 116, 137, 183, 236, 290, 410
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	3 cut(s)	101, 143, 176
BslI	CCNNNNNNNGG	2 cut(s)	52, 73
BsmAI	GTCTC	2 cut(s)	170, 290
BsmFI	GGGAC	3 cut(s)	101, 143, 176
BsnI	GGCC	8 cut(s)	45, 66, 116, 137, 183, 236, 290, 410
BsoBI	CYCGRG	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	80, 118
BspANI	GGCC	8 cut(s)	45, 66, 116, 137, 183, 236, 290, 410
BspCNI	CTCAG	3 cut(s)	43, 92, 382
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	324, 349, 442, 469
BssECI	CCNNGG	4 cut(s)	39, 192, 204, 205
BssT1I	CCWWGG	2 cut(s)	39, 192
Bst2UI	CCWGG	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	4 cut(s)	64, 153, 408, 460
BstDEI	CTNAG	3 cut(s)	51, 79, 369
BstF5I	GGATG	1 cut(s)	5
BstMAI	GTCTC	2 cut(s)	170, 290
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 254, 275, 287, 383
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	204, 281
BstSFI	CTRYAG	2 cut(s)	22, 335
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	5 cut(s)	200, 241, 290, 349, 364
BsuRI	GGCC	8 cut(s)	45, 66, 116, 137, 183, 236, 290, 410
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	331, 462
Cac8I	GCNNGC	4 cut(s)	64, 153, 408, 460
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	4 cut(s)	43, 114, 115, 136
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	308, 364
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	3 cut(s)	51, 79, 369
EaeI	YGGCCR	2 cut(s)	64, 408
Eco130I	CCWWGG	2 cut(s)	39, 192
Eco24I	GRGCYC	2 cut(s)	80, 118
Eco88I	CYCGRG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	39, 192
EcoT38I	GRGCYC	2 cut(s)	80, 118
ErhI	CCWWGG	2 cut(s)	39, 192
FaeI	CATG	2 cut(s)	311, 367
FaiI	YATR	3 cut(s)	172, 309, 365
FaqI	GGGAC	3 cut(s)	101, 143, 176
FatI	CATG	2 cut(s)	307, 363
Fnu4HI	GCNGC	5 cut(s)	189, 255, 279, 338, 378
FriOI	GRGCYC	2 cut(s)	80, 118
Fsp4HI	GCNGC	5 cut(s)	189, 255, 279, 338, 378
GluI	GCNGC	5 cut(s)	189, 255, 279, 338, 378
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	8 cut(s)	45, 66, 116, 137, 183, 236, 290, 410
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	311, 367
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	448
HpyAV	CCTTC	7 cut(s)	95, 99, 116, 120, 238, 280, 448
HpyCH4V	TGCA	2 cut(s)	257, 337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 254, 275, 287, 383
HpyF3I	CTNAG	3 cut(s)	51, 79, 369
Hsp92II	CATG	2 cut(s)	311, 367
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	5 cut(s)	200, 241, 290, 349, 364
LweI	GCATC	2 cut(s)	14, 373
MboII	GAAGA	2 cut(s)	284, 370
MhlI	GDGCHC	2 cut(s)	80, 118
MlsI	TGGCCA	2 cut(s)	66, 410
MluNI	TGGCCA	2 cut(s)	66, 410
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	46, 105, 244, 258, 415
Mox20I	TGGCCA	2 cut(s)	66, 410
MscI	TGGCCA	2 cut(s)	66, 410
MseI	TTAA	1 cut(s)	469
Msp20I	TGGCCA	2 cut(s)	66, 410
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	206, 283
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	35, 254, 275, 287, 383
NciI	CCSGG	1 cut(s)	283
NlaIII	CATG	2 cut(s)	311, 367
NlaIV	GGNNCC	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	328
PasI	CCCWGGG	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	190, 256, 280, 339, 379
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	116
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	43, 114, 115, 136
PstI	CTGCAG	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	5 cut(s)	189, 255, 279, 338, 378
Sau96I	GGNCC	4 cut(s)	43, 114, 115, 136
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	206, 283
SduI	GDGCHC	2 cut(s)	80, 118
SetI	ASST	5 cut(s)	23, 31, 52, 214, 218
SfaNI	GCATC	2 cut(s)	14, 373
SfcI	CTRYAG	2 cut(s)	22, 335
StyD4I	CCNGG	2 cut(s)	204, 281
StyI	CCWWGG	2 cut(s)	39, 192
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TscAI	CASTG	2 cut(s)	331, 469
TseI	GCWGC	5 cut(s)	188, 254, 278, 337, 377
TspDTI	ATGAA	2 cut(s)	371, 447
TspRI	CASTG	2 cut(s)	331, 469
Van91I	CCANNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.