Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

86520515 .. 86521520

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG560500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAGTGGCTATGGCTATGGCTTTCATTCCCATCACATCAAAGCAAACAAGAAGAAAAACACACTCACAGAGGTTTAGCTATCACTCAGAAGTTCAGAACTTACAGATCCATCACTCGGAAGCAAACAATGGCATCCCACAAACAGAGCTACAGAGCTGGTGAAACCAAGGGCCAGACTGAGGAAAAGGCGAACCAGATGATGGAGTCACTAGGGGAGAAGGCTCAAGAAGCAAAGGACAAGACCTACCAGGCAGCTCAAACAGCCAAAGAGAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGACAGGAGTTACAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGGGCCTCCGAGGCGGCGCAAAGAGCTGGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGGGCCTCCGAGGCGGCGCAAAGAGCCGGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGAGCGTCGGAGGCTGCCCAGAGAGCCGGAGATTCGGCCGAGTCTGGCAAGGAGAGAAGTGAGGGGTTCCTCCAACAGACTGGAGAACAGATGAAGAACATGGCCCAAGGTGCTGTTGATACTGTGAAAGGCACCCTCGGCCTGGCCAAGGATGATGAGGAAGATGAACCTGTTTTTCATAAGAGGGACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

247

Amino Acids

27.61

Weight (kDa)

9.3

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	2 cut(s)	386, 473
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	582, 690
AfiI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 688, 694
AjnI	CCWGG	2 cut(s)	249, 687
AluBI	AGCT	5 cut(s)	80, 150, 158, 257, 398
AluI	AGCT	5 cut(s)	80, 150, 158, 257, 398
Alw26I	GTCTC	3 cut(s)	353, 440, 527
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	8 cut(s)	172, 309, 375, 462, 582, 648, 685, 690
ApeKI	GCWGC	2 cut(s)	254, 560
AspLEI	GCGC	2 cut(s)	391, 478
AspS9I	GGNCC	5 cut(s)	172, 310, 375, 462, 649
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	266, 547
BccI	CCATC	3 cut(s)	40, 119, 196
BciT130I	CCWGG	2 cut(s)	251, 689
BcoDI	GTCTC	3 cut(s)	353, 440, 527
BfaI	CTAG	2 cut(s)	212, 742
BfmI	CTRYAG	1 cut(s)	151
BglI	GCCNNNNNGGC	2 cut(s)	383, 470
BisI	GCNGC	4 cut(s)	255, 387, 474, 561
BlsI	GCNGC	4 cut(s)	256, 388, 475, 562
Bme1390I	CCNGG	2 cut(s)	251, 689
BmgT120I	GGNCC	5 cut(s)	172, 310, 375, 462, 649
BmiI	GGNNCC	2 cut(s)	614, 679
BmrFI	CCNGG	2 cut(s)	251, 689
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	420, 648
BpuEI	CTTGAG	1 cut(s)	210
BsaJI	CCNNGG	6 cut(s)	168, 381, 468, 652, 682, 693
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 688, 694
Bse1I	ACTGG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	251, 689
BseDI	CCNNGG	6 cut(s)	168, 381, 468, 652, 682, 693
BseGI	GGATG	2 cut(s)	134, 703
BseLI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 688, 694
BseMII	CTCAG	2 cut(s)	101, 171
BseNI	ACTGG	1 cut(s)	631
BseX3I	CGGCCG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	266, 547
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	8 cut(s)	174, 311, 377, 464, 584, 650, 687, 692
BshNI	GGYRCC	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	486, 573
BslI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 688, 694
BsmAI	GTCTC	3 cut(s)	353, 440, 527
BsnI	GGCC	8 cut(s)	174, 311, 377, 464, 584, 650, 687, 692
Bsp143I	GATC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	386, 473
BspANI	GGCC	8 cut(s)	174, 311, 377, 464, 584, 650, 687, 692
BspCNI	CTCAG	2 cut(s)	100, 172
BspLI	GGNNCC	2 cut(s)	614, 679
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	6 cut(s)	168, 381, 468, 652, 682, 693
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	3 cut(s)	168, 652, 693
Bst2UI	CCWGG	2 cut(s)	251, 689
Bst4CI	ACNGT	1 cut(s)	670
BstAPI	GCANNNNNTGC	2 cut(s)	416, 503
BstDEI	CTNAG	5 cut(s)	87, 180, 366, 453, 540
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	134, 703
BstHHI	GCGC	2 cut(s)	391, 478
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	3 cut(s)	353, 440, 527
BstMBI	GATC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	585
BstNI	CCWGG	2 cut(s)	251, 689
BstSCI	CCNGG	2 cut(s)	249, 687
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	266, 547
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	582
BsuRI	GGCC	8 cut(s)	174, 311, 377, 464, 584, 650, 687, 692
BtsCI	GGATG	2 cut(s)	134, 703
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CfoI	GCGC	2 cut(s)	391, 478
Cfr13I	GGNCC	5 cut(s)	172, 310, 375, 462, 649
CseI	GACGC	1 cut(s)	540
CviAII	CATG	4 cut(s)	345, 432, 519, 646
DdeI	CTNAG	5 cut(s)	87, 180, 366, 453, 540
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	582, 690
EagI	CGGCCG	1 cut(s)	582
EclXI	CGGCCG	1 cut(s)	582
Eco130I	CCWWGG	3 cut(s)	168, 652, 693
Eco52I	CGGCCG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO109I	RGGNCCY	2 cut(s)	375, 462
EcoRII	CCWGG	2 cut(s)	249, 687
EcoT14I	CCWWGG	3 cut(s)	168, 652, 693
ErhI	CCWWGG	3 cut(s)	168, 652, 693
FaeI	CATG	4 cut(s)	348, 435, 522, 649
FaiI	YATR	7 cut(s)	13, 19, 346, 433, 520, 647, 726
FatI	CATG	4 cut(s)	344, 431, 518, 645
Fnu4HI	GCNGC	4 cut(s)	255, 387, 474, 561
FokI	GGATG	2 cut(s)	121, 710
Fsp4HI	GCNGC	4 cut(s)	255, 387, 474, 561
FspBI	CTAG	2 cut(s)	212, 742
GlaI	GCGC	2 cut(s)	390, 477
GluI	GCNGC	4 cut(s)	255, 387, 474, 561
GsuI	CTGGAG	2 cut(s)	420, 648
HaeIII	GGCC	8 cut(s)	174, 311, 377, 464, 584, 650, 687, 692
HapII	CCGG	2 cut(s)	486, 573
HgaI	GACGC	1 cut(s)	540
HhaI	GCGC	2 cut(s)	391, 478
Hin1II	CATG	4 cut(s)	348, 435, 522, 649
Hin6I	GCGC	2 cut(s)	389, 476
HinP1I	GCGC	2 cut(s)	389, 476
HinfI	GANTC	3 cut(s)	206, 578, 587
HpaII	CCGG	2 cut(s)	486, 573
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	6 cut(s)	90, 98, 120, 382, 469, 556
Hpy188III	TCNNGA	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	214, 400, 487
HpyCH4III	ACNGT	1 cut(s)	670
HpyCH4V	TGCA	4 cut(s)	4, 287, 419, 506
HpyF3I	CTNAG	5 cut(s)	87, 180, 366, 453, 540
Hsp92II	CATG	4 cut(s)	348, 435, 522, 649
HspAI	GCGC	2 cut(s)	389, 476
Kzo9I	GATC	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	266, 547
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	212, 742
MaeIII	GTNAC	2 cut(s)	207, 328
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	4 cut(s)	65, 331, 652, 719
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	692
MluNI	TGGCCA	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	215, 596
MmeI	TCCRAC	2 cut(s)	534, 643
Mox20I	TGGCCA	1 cut(s)	692
MscI	TGGCCA	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	692
MspI	CCGG	2 cut(s)	486, 573
MspR9I	CCNGG	2 cut(s)	251, 689
MvaI	CCWGG	2 cut(s)	251, 689
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	4 cut(s)	348, 435, 522, 649
NlaIV	GGNNCC	2 cut(s)	614, 679
NmeAIII	GCCGAG	2 cut(s)	610, 663
NmuCI	GTSAC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	578
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	256, 388, 475, 562
PleI	GAGTC	2 cut(s)	214, 595
PpsI	GAGTC	2 cut(s)	214, 595
Psp6I	CCWGG	2 cut(s)	249, 687
PspGI	CCWGG	2 cut(s)	249, 687
PspN4I	GGNNCC	2 cut(s)	614, 679
PspPI	GGNCC	5 cut(s)	172, 310, 375, 462, 649
PsuI	RGATCY	1 cut(s)	107
SatI	GCNGC	4 cut(s)	255, 387, 474, 561
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	5 cut(s)	172, 310, 375, 462, 649
SchI	GAGTC	2 cut(s)	215, 596
ScrFI	CCNGG	2 cut(s)	251, 689
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SsiI	CCGC	2 cut(s)	386, 473
SspMI	CTAG	2 cut(s)	212, 742
StyD4I	CCNGG	2 cut(s)	249, 687
StyI	CCWWGG	3 cut(s)	168, 652, 693
TaaI	ACNGT	1 cut(s)	670
TauI	GCSGC	2 cut(s)	389, 476
TfiI	GAWTC	1 cut(s)	578
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	2 cut(s)	254, 560
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	4 cut(s)	15, 653, 713, 726
Van91I	CCANNNNNTGG	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	692
XspI	CTAG	2 cut(s)	212, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.