Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

257594 .. 258496

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggctatggctttcattcccatcacatcaaagcaaacaagaagaaaaacacactcacagaggtctagctattatagatccatcactcggaagcaaacaatggcatcccacaaacagaggcagagctacagagctggtgaaaccaagggccagactgaggaaaaggcgaaccagatgatggagtcactaggggagaaggctcaagcagcaaaggacaaaacctaccaggcagctcaaacagccaaagagaaaacaagaggtgcaacccaagcaactacccacaaggcccaagagaaggcaggagttacaaaagacaaggcatgggagagcaaggagacaactaaggatagggcctccgaggcggcgcaaagagctggagagaaggcaggagttgcaaaagacaaggcatgggagagcaaggagacaactaaggatagggcgtcggaggctgcccagagagccggagatccggccgagtctggcaaggagagaagtgaggggttcctccaacagactggagaacagatgaagaacatggcccaaggtgctgttgatactgtgaaaggcaccctcggcctggccaaggatgatgaggaagatgaacctgtttattataagagggacaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

210

Amino Acids

23.35

Weight (kDa)

9.57

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	178
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	72, 461
AcoI	YGGCCR	2 cut(s)	471, 579
AcyI	GRCGYC	1 cut(s)	440
AfiI	CCNNNNNNNGG	6 cut(s)	87, 157, 178, 295, 577, 583
AjnI	CCWGG	2 cut(s)	225, 576
AluBI	AGCT	5 cut(s)	69, 126, 134, 233, 374
AluI	AGCT	5 cut(s)	69, 126, 134, 233, 374
Alw26I	GTCTC	2 cut(s)	329, 416
AlwI	GGATC	2 cut(s)	72, 461
AoxI	GGCC	7 cut(s)	148, 285, 351, 471, 537, 574, 579
ApeKI	GCWGC	3 cut(s)	206, 230, 449
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	4 cut(s)	148, 286, 351, 538
AsuHPI	GGTGA	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	218, 242, 436
BccI	CCATC	3 cut(s)	29, 89, 172
BciT130I	CCWGG	2 cut(s)	227, 578
BcoDI	GTCTC	2 cut(s)	329, 416
BfaI	CTAG	3 cut(s)	66, 188, 631
BfmI	CTRYAG	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	207, 231, 363, 450
BlsI	GCNGC	4 cut(s)	208, 232, 364, 451
Bme1390I	CCNGG	2 cut(s)	227, 578
BmgT120I	GGNCC	4 cut(s)	148, 286, 351, 538
BmiI	GGNNCC	2 cut(s)	503, 568
BmrFI	CCNGG	2 cut(s)	227, 578
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	2 cut(s)	396, 537
BpuEI	CTTGAG	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	440
BsaJI	CCNNGG	5 cut(s)	144, 357, 541, 571, 582
Bsc4I	CCNNNNNNNGG	6 cut(s)	87, 157, 178, 295, 577, 583
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	227, 578
BseDI	CCNNGG	5 cut(s)	144, 357, 541, 571, 582
BseGI	GGATG	2 cut(s)	104, 592
BseLI	CCNNNNNNNGG	6 cut(s)	87, 157, 178, 295, 577, 583
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	520
BseX3I	CGGCCG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	218, 242, 436
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	7 cut(s)	150, 287, 353, 473, 539, 576, 581
BshNI	GGYRCC	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	462, 470
BslI	CCNNNNNNNGG	6 cut(s)	87, 157, 178, 295, 577, 583
BsmAI	GTCTC	2 cut(s)	329, 416
BsnI	GGCC	7 cut(s)	150, 287, 353, 473, 539, 576, 581
Bsp143I	GATC	2 cut(s)	77, 466
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	7 cut(s)	150, 287, 353, 473, 539, 576, 581
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	503, 568
BspPI	GGATC	2 cut(s)	72, 461
BspT107I	GGYRCC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	5 cut(s)	144, 357, 541, 571, 582
BssMI	GATC	2 cut(s)	77, 466
BssNI	GRCGYC	1 cut(s)	440
BssT1I	CCWWGG	3 cut(s)	144, 541, 582
Bst2UI	CCWGG	2 cut(s)	227, 578
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstDEI	CTNAG	3 cut(s)	156, 342, 429
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	104, 592
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	2 cut(s)	80, 469
BstMAI	GTCTC	2 cut(s)	329, 416
BstMBI	GATC	2 cut(s)	77, 466
BstMCI	CGRYCG	1 cut(s)	474
BstNI	CCWGG	2 cut(s)	227, 578
BstSCI	CCNGG	2 cut(s)	225, 576
BstSFI	CTRYAG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	218, 242, 436
BstX2I	RGATCY	2 cut(s)	77, 466
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	2 cut(s)	77, 466
BstZI	CGGCCG	1 cut(s)	471
BsuRI	GGCC	7 cut(s)	150, 287, 353, 473, 539, 576, 581
BtsCI	GGATG	2 cut(s)	104, 592
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	4 cut(s)	148, 286, 351, 538
CseI	GACGC	1 cut(s)	429
CviAII	CATG	3 cut(s)	321, 408, 535
DdeI	CTNAG	3 cut(s)	156, 342, 429
DpnI	GATC	2 cut(s)	79, 468
DpnII	GATC	2 cut(s)	77, 466
EaeI	YGGCCR	2 cut(s)	471, 579
EagI	CGGCCG	1 cut(s)	471
EclXI	CGGCCG	1 cut(s)	471
Eco130I	CCWWGG	3 cut(s)	144, 541, 582
Eco52I	CGGCCG	1 cut(s)	471
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	225, 576
EcoT14I	CCWWGG	3 cut(s)	144, 541, 582
ErhI	CCWWGG	3 cut(s)	144, 541, 582
FaeI	CATG	3 cut(s)	324, 411, 538
FaiI	YATR	6 cut(s)	8, 75, 322, 409, 536, 615
FatI	CATG	3 cut(s)	320, 407, 534
Fnu4HI	GCNGC	4 cut(s)	207, 231, 363, 450
FokI	GGATG	2 cut(s)	91, 599
Fsp4HI	GCNGC	4 cut(s)	207, 231, 363, 450
FspBI	CTAG	3 cut(s)	66, 188, 631
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	4 cut(s)	207, 231, 363, 450
GsuI	CTGGAG	2 cut(s)	396, 537
HaeIII	GGCC	7 cut(s)	150, 287, 353, 473, 539, 576, 581
HapII	CCGG	2 cut(s)	462, 470
HgaI	GACGC	1 cut(s)	429
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	324, 411, 538
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	182, 476
HpaII	CCGG	2 cut(s)	462, 470
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	90, 358, 445
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	190, 289, 376
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	263, 395
HpyF3I	CTNAG	3 cut(s)	156, 342, 429
Hsp92I	GRCGYC	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	324, 411, 538
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	2 cut(s)	77, 466
Lsp1109I	GCAGC	3 cut(s)	218, 242, 436
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	3 cut(s)	66, 188, 631
MaeIII	GTNAC	2 cut(s)	183, 304
MalI	GATC	2 cut(s)	79, 468
MboI	GATC	2 cut(s)	77, 466
MboII	GAAGA	3 cut(s)	54, 541, 608
MflI	RGATCY	2 cut(s)	77, 466
MlsI	TGGCCA	1 cut(s)	581
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	2 cut(s)	191, 485
MmeI	TCCRAC	2 cut(s)	423, 532
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
Msp20I	TGGCCA	1 cut(s)	581
MspI	CCGG	2 cut(s)	462, 470
MspR9I	CCNGG	2 cut(s)	227, 578
MvaI	CCWGG	2 cut(s)	227, 578
NdeII	GATC	2 cut(s)	77, 466
NlaIII	CATG	3 cut(s)	324, 411, 538
NlaIV	GGNNCC	2 cut(s)	503, 568
NmeAIII	GCCGAG	2 cut(s)	499, 552
NmuCI	GTSAC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	208, 232, 364, 451
PleI	GAGTC	2 cut(s)	190, 484
PpsI	GAGTC	2 cut(s)	190, 484
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	225, 576
PspGI	CCWGG	2 cut(s)	225, 576
PspN4I	GGNNCC	2 cut(s)	503, 568
PspPI	GGNCC	4 cut(s)	148, 286, 351, 538
PsuI	RGATCY	2 cut(s)	77, 466
SatI	GCNGC	4 cut(s)	207, 231, 363, 450
Sau3AI	GATC	2 cut(s)	77, 466
Sau96I	GGNCC	4 cut(s)	148, 286, 351, 538
SchI	GAGTC	2 cut(s)	191, 485
ScrFI	CCNGG	2 cut(s)	227, 578
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	3 cut(s)	66, 188, 631
StyD4I	CCNGG	2 cut(s)	225, 576
StyI	CCWWGG	3 cut(s)	144, 541, 582
TaaI	ACNGT	1 cut(s)	559
TauI	GCSGC	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	3 cut(s)	206, 230, 449
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	4, 542, 615
Van91I	CCANNNNNTGG	1 cut(s)	178
XagI	CCTNNNNNAGG	1 cut(s)	581
XspI	CTAG	3 cut(s)	66, 188, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.