Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

24700184 .. 24700627

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1204200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCACAGTGGGGAACAAGGCACAAGAAGAACGGAACAAGGCCTATGACACAACCCAAGCAACAAGGGACAAGACATACGAGACAGCCCAGTCAGCCAAGGGCAGAAAACAGGCCCCTATGAACCAGGTGAAAGACAAGACCGCCGAGAAGGCGGAGCAAGCAAAAGAGAAGGCCTGGGAGACCAAGGAGACGGCCCAGCAGAAAGCAGAAGAGGCAGCCCAGAAGACCAAAGAGACCGCCCAGTACGGCAAAGAGAAAGCCTCAGGGATCATGCAGCAGACTGGAGAGCAGATGAAGCACATGGCACAAGGTGCTGCAGATGCTGTGAAAGGCACTTTTGGGTTGGGCAAGAATGATGATAAGGAAGAGGAAACTGGTGTTTATTATAACAAGGACTCCACCACCGGCACTACCGGTGGCACCACCAAAAGATCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

148

Amino Acids

16.11

Weight (kDa)

8.89

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	422
AciI	CCGC	3 cut(s)	144, 155, 240
AclWI	GGATC	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	248
AgeI	ACCGGT	1 cut(s)	416
AjnI	CCWGG	2 cut(s)	126, 176
Alw26I	GTCTC	4 cut(s)	77, 176, 185, 230
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	4 cut(s)	42, 114, 174, 195
ApeKI	GCWGC	3 cut(s)	218, 277, 317
AsiGI	ACCGGT	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	115, 196
AsuHPI	GGTGA	1 cut(s)	142
AxyI	CCTNAGG	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	230, 289, 304
BceAI	ACGGC	2 cut(s)	210, 265
BciT130I	CCWGG	2 cut(s)	128, 178
BcoDI	GTCTC	4 cut(s)	77, 176, 185, 230
BfmI	CTRYAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	3 cut(s)	219, 278, 318
BlsI	GCNGC	3 cut(s)	220, 279, 319
Bme1390I	CCNGG	2 cut(s)	128, 178
BmgT120I	GGNCC	2 cut(s)	115, 196
BmiI	GGNNCC	2 cut(s)	117, 424
BmrFI	CCNGG	2 cut(s)	128, 178
BmrI	ACTGGG	2 cut(s)	85, 238
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	2 cut(s)	85, 238
BpiI	GAAGAC	1 cut(s)	233
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	306
BsaI	GGTCTC	2 cut(s)	176, 230
BsaJI	CCNNGG	3 cut(s)	99, 177, 186
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse118I	RCCGGY	2 cut(s)	407, 416
Bse1I	ACTGG	4 cut(s)	91, 244, 289, 382
Bse21I	CCTNAGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	128, 178
BseDI	CCNNGG	3 cut(s)	99, 177, 186
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	4 cut(s)	91, 244, 289, 382
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	230, 289, 304
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	4 cut(s)	44, 116, 176, 197
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	408, 417
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	4 cut(s)	77, 176, 185, 230
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	4 cut(s)	44, 116, 176, 197
Bso31I	GGTCTC	2 cut(s)	176, 230
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	270, 434
BspACI	CCGC	3 cut(s)	144, 155, 240
BspANI	GGCC	4 cut(s)	44, 116, 176, 197
BspCNI	CTCAG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	117, 424
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	2 cut(s)	176, 230
BsrFI	RCCGGY	2 cut(s)	407, 416
BsrI	ACTGG	4 cut(s)	91, 244, 289, 382
BssAI	RCCGGY	2 cut(s)	407, 416
BssECI	CCNNGG	3 cut(s)	99, 177, 186
BssMI	GATC	2 cut(s)	270, 434
BssT1I	CCWWGG	2 cut(s)	99, 186
Bst2UI	CCWGG	2 cut(s)	128, 178
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	207, 363
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	273, 437
BstMAI	GTCTC	4 cut(s)	77, 176, 185, 230
BstMBI	GATC	2 cut(s)	270, 434
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 152, 161, 215, 298, 314, 323
BstNI	CCWGG	2 cut(s)	128, 178
BstSCI	CCNGG	2 cut(s)	126, 176
BstSFI	CTRYAG	1 cut(s)	318
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	230, 289, 304
BstV2I	GAAGAC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	44, 116, 176, 197
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	2 cut(s)	407, 416
Cfr13I	GGNCC	2 cut(s)	115, 196
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	2 cut(s)	274, 304
CviJI	RGCY	8 cut(s)	44, 89, 98, 116, 176, 197, 221, 263
CviKI_1	RGCY	8 cut(s)	44, 89, 98, 116, 176, 197, 221, 263
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	2 cut(s)	272, 436
DpnII	GATC	2 cut(s)	270, 434
DraIII	CACNNNGTG	1 cut(s)	314
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	207, 363
EarI	CTCTTC	2 cut(s)	207, 363
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	99, 186
Eco147I	AGGCCT	2 cut(s)	44, 176
Eco31I	GGTCTC	2 cut(s)	176, 230
Eco81I	CCTNAGG	1 cut(s)	265
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	126, 176
EcoT14I	CCWWGG	2 cut(s)	99, 186
ErhI	CCWWGG	2 cut(s)	99, 186
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	277, 307
FaiI	YATR	6 cut(s)	48, 79, 122, 275, 305, 390
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	273, 303
Fnu4HI	GCNGC	3 cut(s)	219, 278, 318
Fsp4HI	GCNGC	3 cut(s)	219, 278, 318
GluI	GCNGC	3 cut(s)	219, 278, 318
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	44, 116, 176, 197
HapII	CCGG	2 cut(s)	408, 417
Hin1II	CATG	2 cut(s)	277, 307
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	2 cut(s)	408, 417
HphI	GGTGA	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	145, 166
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	277, 320
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 152, 161, 215, 298, 314, 323
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	277, 307
Kzo9I	GATC	2 cut(s)	270, 434
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	3 cut(s)	230, 289, 304
LweI	GCATC	1 cut(s)	313
MabI	ACCWGGT	1 cut(s)	126
MalI	GATC	2 cut(s)	272, 436
MboI	GATC	2 cut(s)	270, 434
MboII	GAAGA	4 cut(s)	41, 224, 238, 380
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	3 cut(s)	208, 274, 364
MspI	CCGG	2 cut(s)	408, 417
MspR9I	CCNGG	2 cut(s)	128, 178
MvaI	CCWGG	2 cut(s)	128, 178
MwoI	GCNNNNNNNGC	7 cut(s)	95, 152, 161, 215, 298, 314, 323
NdeII	GATC	2 cut(s)	270, 434
NlaIII	CATG	2 cut(s)	277, 307
NlaIV	GGNNCC	2 cut(s)	117, 424
NmeAIII	GCCGAG	1 cut(s)	172
PceI	AGGCCT	2 cut(s)	44, 176
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	220, 279, 319
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	126, 176
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	126, 176
PspN4I	GGNNCC	2 cut(s)	117, 424
PspPI	GGNCC	2 cut(s)	115, 196
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	3 cut(s)	219, 278, 318
Sau3AI	GATC	2 cut(s)	270, 434
Sau96I	GGNCC	2 cut(s)	115, 196
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	128, 178
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	132, 316
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	318
SseBI	AGGCCT	2 cut(s)	44, 176
SsiI	CCGC	3 cut(s)	144, 155, 240
StuI	AGGCCT	2 cut(s)	44, 176
StyD4I	CCNGG	2 cut(s)	126, 176
StyI	CCWWGG	2 cut(s)	99, 186
TaaI	ACNGT	1 cut(s)	10
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	3 cut(s)	218, 277, 317
TspDTI	ATGAA	2 cut(s)	137, 311
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.