Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

261704 .. 262587

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000075.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggctatagctttcattcccatcacatcaaagcaaacaagaagaaaaacacagtcacaagctatcactcagaagttcagaacttacagatccatcactcggaagcaaacaatggcatcccacaaacagagctacagagctggtgaaaccaagggccagactgaggaaaaggccaaccagatgatggagtcactaggggagaaggctcaagcagcaaaggacaagacccaccaggctgctcaaacagccaaagagaaaacaagaggtgcaacccaagcaactacccacaaggcccaagagaaggcaggagtcacaaaagacaaggcatgggagagcaaggagacaactaaggatagggcctccgaggcggcgcaaagagctggagagaaggcaggagttgcaaaagacaaggcatgggagagcaaggagacaactaaggatagggcgtcggagactgcccagagagccggagattcggccgagtctggcaaggagagaagtgaggggttcctccaacagactggagaacagatgaagaacatggcccaaggtgctgttgatactgtgaaaggcaccctcggcctggccaaggatgatgaggaagatgaacctgtttattataagagggacaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

212

Amino Acids

23.48

Weight (kDa)

9.59

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccB1I	GGYRCC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	2 cut(s)	477, 585
AcyI	GRCGYC	1 cut(s)	446
AfiI	CCNNNNNNNGG	6 cut(s)	99, 163, 184, 301, 583, 589
AjnI	CCWGG	2 cut(s)	231, 582
AluBI	AGCT	5 cut(s)	11, 62, 132, 140, 380
AluI	AGCT	5 cut(s)	11, 62, 132, 140, 380
Alw26I	GTCTC	3 cut(s)	335, 422, 446
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	8 cut(s)	154, 171, 291, 357, 477, 543, 580, 585
ApeKI	GCWGC	2 cut(s)	212, 236
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	4 cut(s)	154, 292, 357, 544
AsuHPI	GGTGA	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	572
BbvI	GCAGC	2 cut(s)	223, 224
BccI	CCATC	3 cut(s)	29, 101, 178
BciT130I	CCWGG	2 cut(s)	233, 584
BcoDI	GTCTC	3 cut(s)	335, 422, 446
BfaI	CTAG	2 cut(s)	194, 637
BfmI	CTRYAG	2 cut(s)	6, 133
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	213, 237, 369
BlsI	GCNGC	3 cut(s)	214, 238, 370
Bme1390I	CCNGG	2 cut(s)	233, 584
BmgT120I	GGNCC	4 cut(s)	154, 292, 357, 544
BmiI	GGNNCC	2 cut(s)	509, 574
BmrFI	CCNGG	2 cut(s)	233, 584
BmsI	GCATC	1 cut(s)	125
BpmI	CTGGAG	2 cut(s)	402, 543
BpuEI	CTTGAG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	5 cut(s)	150, 363, 547, 577, 588
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 163, 184, 301, 583, 589
Bse1I	ACTGG	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	233, 584
BseDI	CCNNGG	5 cut(s)	150, 363, 547, 577, 588
BseGI	GGATG	2 cut(s)	116, 598
BseLI	CCNNNNNNNGG	6 cut(s)	99, 163, 184, 301, 583, 589
BseMII	CTCAG	2 cut(s)	83, 153
BseNI	ACTGG	1 cut(s)	526
BseX3I	CGGCCG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	223, 224
Bsh1285I	CGRYCG	1 cut(s)	480
BshFI	GGCC	8 cut(s)	156, 173, 293, 359, 479, 545, 582, 587
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	6 cut(s)	99, 163, 184, 301, 583, 589
BsmAI	GTCTC	3 cut(s)	335, 422, 446
BsnI	GGCC	8 cut(s)	156, 173, 293, 359, 479, 545, 582, 587
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	8 cut(s)	156, 173, 293, 359, 479, 545, 582, 587
BspCNI	CTCAG	2 cut(s)	82, 154
BspLI	GGNNCC	2 cut(s)	509, 574
BspPI	GGATC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	572
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	5 cut(s)	150, 363, 547, 577, 588
BssMI	GATC	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	446
BssT1I	CCWWGG	3 cut(s)	150, 547, 588
Bst2UI	CCWGG	2 cut(s)	233, 584
Bst4CI	ACNGT	2 cut(s)	54, 565
BstACI	GRCGYC	1 cut(s)	446
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstDEI	CTNAG	4 cut(s)	69, 162, 348, 435
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	116, 598
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	3 cut(s)	335, 422, 446
BstMBI	GATC	1 cut(s)	89
BstMCI	CGRYCG	1 cut(s)	480
BstMWI	GCNNNNNNNGC	9 cut(s)	212, 245, 275, 365, 377, 398, 464, 551, 579
BstNI	CCWGG	2 cut(s)	233, 584
BstSCI	CCNGG	2 cut(s)	231, 582
BstSFI	CTRYAG	2 cut(s)	6, 133
BstV1I	GCAGC	2 cut(s)	223, 224
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	89
BstZI	CGGCCG	1 cut(s)	477
BsuRI	GGCC	8 cut(s)	156, 173, 293, 359, 479, 545, 582, 587
BtsCI	GGATG	2 cut(s)	116, 598
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	4 cut(s)	154, 292, 357, 544
CseI	GACGC	1 cut(s)	435
CviAII	CATG	3 cut(s)	327, 414, 541
DdeI	CTNAG	4 cut(s)	69, 162, 348, 435
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EaeI	YGGCCR	2 cut(s)	477, 585
EagI	CGGCCG	1 cut(s)	477
EclXI	CGGCCG	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	150, 547, 588
Eco52I	CGGCCG	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	231, 582
EcoT14I	CCWWGG	3 cut(s)	150, 547, 588
ErhI	CCWWGG	3 cut(s)	150, 547, 588
FaeI	CATG	3 cut(s)	330, 417, 544
FaiI	YATR	5 cut(s)	8, 328, 415, 542, 621
FatI	CATG	3 cut(s)	326, 413, 540
Fnu4HI	GCNGC	3 cut(s)	213, 237, 369
FokI	GGATG	2 cut(s)	103, 605
Fsp4HI	GCNGC	3 cut(s)	213, 237, 369
FspBI	CTAG	2 cut(s)	194, 637
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	213, 237, 369
GsuI	CTGGAG	2 cut(s)	402, 543
HaeIII	GGCC	8 cut(s)	156, 173, 293, 359, 479, 545, 582, 587
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	435
HhaI	GCGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	330, 417, 544
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	4 cut(s)	188, 309, 473, 482
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	5 cut(s)	72, 80, 102, 364, 451
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	196, 295, 382
HpyCH4III	ACNGT	2 cut(s)	54, 565
HpyCH4V	TGCA	2 cut(s)	269, 401
HpyF10VI	GCNNNNNNNGC	9 cut(s)	212, 245, 275, 365, 377, 398, 464, 551, 579
HpyF3I	CTNAG	4 cut(s)	69, 162, 348, 435
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	3 cut(s)	330, 417, 544
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	89
Lsp1109I	GCAGC	2 cut(s)	223, 224
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	194, 637
MaeIII	GTNAC	3 cut(s)	54, 189, 310
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	54, 547, 614
MflI	RGATCY	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	587
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	3 cut(s)	197, 318, 491
MmeI	TCCRAC	2 cut(s)	429, 538
MnlI	CCTC	9 cut(s)	157, 257, 358, 370, 496, 521, 587, 592, 618
Mox20I	TGGCCA	1 cut(s)	587
MscI	TGGCCA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	587
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	233, 584
MvaI	CCWGG	2 cut(s)	233, 584
MwoI	GCNNNNNNNGC	9 cut(s)	212, 245, 275, 365, 377, 398, 464, 551, 579
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	3 cut(s)	330, 417, 544
NlaIV	GGNNCC	2 cut(s)	509, 574
NmeAIII	GCCGAG	2 cut(s)	505, 558
NmuCI	GTSAC	3 cut(s)	54, 189, 310
PfeI	GAWTC	1 cut(s)	473
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	214, 238, 370
PleI	GAGTC	3 cut(s)	196, 317, 490
PpsI	GAGTC	3 cut(s)	196, 317, 490
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	231, 582
PspGI	CCWGG	2 cut(s)	231, 582
PspN4I	GGNNCC	2 cut(s)	509, 574
PspPI	GGNCC	4 cut(s)	154, 292, 357, 544
PsuI	RGATCY	1 cut(s)	89
SatI	GCNGC	3 cut(s)	213, 237, 369
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	4 cut(s)	154, 292, 357, 544
SchI	GAGTC	3 cut(s)	197, 318, 491
ScrFI	CCNGG	2 cut(s)	233, 584
SetI	ASST	8 cut(s)	13, 64, 134, 142, 268, 382, 553, 613
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	2 cut(s)	6, 133
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	194, 637
StyD4I	CCNGG	2 cut(s)	231, 582
StyI	CCWWGG	3 cut(s)	150, 547, 588
TaaI	ACNGT	2 cut(s)	54, 565
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	473
TseFI	GTSAC	3 cut(s)	54, 189, 310
TseI	GCWGC	2 cut(s)	212, 236
Tsp45I	GTSAC	3 cut(s)	54, 189, 310
TspDTI	ATGAA	3 cut(s)	4, 548, 621
Van91I	CCANNNNNTGG	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	194, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.