Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

37092655 .. 37093738

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCATCCCACAAACAGAGCTACAGAGCTGGTGAAGCCAAGGGCCAGACTGAGGAAAAGACGAACCAAATGATGGAGTCACTAGGGGAGAAGGCTCAAGCAGCCAAGGACAAGACCTACGAGGCAGCTCAGACAGCCAAAGAGAAAACAAAAGGTGCTTCCCAAGCAACTACCCAAAATGTCCAAGAGAAGGCAGGAGCTGCAAAGGAGAAGGCAGGAGCTGCAAAAGACAAGGCATGGGAAAGCAAGGAGGCAACTAAGGATAAGGCTTGGGAGAACAAGGAGGCAACTAAGGATAAGGCTTGGGAGAGCAAGGAGGTAACTAAGGATAGGGCCTCGGATGCGGCGCAGAGAGCCGGAGATAAGGCCGAGTACGGCAAGGAGAGGAGTGAGGGGTTTCTGCAACAGACTGGAGAACAGGTGAAGAACATGGCCCAAGGTGCTGTTAATACTGTGAAAAACACACTTGGCATGGCTGGGAATGATGAGGAAGATGAACCTGTTTATCATAAGAGGGACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

176

Amino Acids

19.19

Weight (kDa)

7.78

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
AluBI	AGCT	5 cut(s)	21, 29, 128, 200, 221
AluI	AGCT	5 cut(s)	21, 29, 128, 200, 221
AlwNI	CAGNNNCTG	2 cut(s)	200, 221
AoxI	GGCC	4 cut(s)	43, 333, 366, 432
ApeKI	GCWGC	4 cut(s)	101, 125, 200, 221
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	43, 333, 433
AsuHPI	GGTGA	2 cut(s)	44, 433
BbvI	GCAGC	4 cut(s)	113, 137, 187, 208
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	83, 526
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	5 cut(s)	102, 126, 201, 222, 345
BlsI	GCNGC	5 cut(s)	103, 127, 202, 223, 346
BmgT120I	GGNCC	3 cut(s)	43, 333, 433
BmsI	GCATC	2 cut(s)	14, 331
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	39, 105, 336, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 73, 190
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	39, 105, 336, 436
BseGI	GGATG	2 cut(s)	5, 346
BseLI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
BseMII	CTCAG	2 cut(s)	42, 143
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	113, 137, 187, 208
BseYI	CCCAGC	1 cut(s)	476
BshFI	GGCC	4 cut(s)	45, 335, 368, 434
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
BsnI	GGCC	4 cut(s)	45, 335, 368, 434
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	4 cut(s)	45, 335, 368, 434
BspCNI	CTCAG	2 cut(s)	43, 142
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	39, 105, 336, 436
BssT1I	CCWWGG	3 cut(s)	39, 105, 436
Bst4CI	ACNGT	1 cut(s)	454
BstAPI	GCANNNNNTGC	2 cut(s)	200, 221
BstDEI	CTNAG	5 cut(s)	51, 129, 258, 291, 324
BstF5I	GGATG	2 cut(s)	5, 346
BstHHI	GCGC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 101, 134, 164, 200, 221, 341, 353, 440
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	113, 137, 187, 208
BsuRI	GGCC	4 cut(s)	45, 335, 368, 434
BtsCI	GGATG	2 cut(s)	5, 346
CaiI	CAGNNNCTG	2 cut(s)	200, 221
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	43, 333, 433
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	3 cut(s)	237, 430, 472
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	5 cut(s)	51, 129, 258, 291, 324
Eco130I	CCWWGG	3 cut(s)	39, 105, 436
EcoO109I	RGGNCCY	1 cut(s)	333
EcoT14I	CCWWGG	3 cut(s)	39, 105, 436
ErhI	CCWWGG	3 cut(s)	39, 105, 436
FaeI	CATG	3 cut(s)	240, 433, 475
FaiI	YATR	4 cut(s)	238, 431, 473, 510
FatI	CATG	3 cut(s)	236, 429, 471
Fnu4HI	GCNGC	5 cut(s)	102, 126, 201, 222, 345
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	102, 126, 201, 222, 345
FspBI	CTAG	2 cut(s)	83, 526
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	5 cut(s)	102, 126, 201, 222, 345
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	45, 335, 368, 434
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	240, 433, 475
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	2 cut(s)	44, 433
Hpy188I	TCNGA	2 cut(s)	132, 340
HpyAV	CCTTC	3 cut(s)	85, 184, 205
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	203, 224, 403
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 101, 134, 164, 200, 221, 341, 353, 440
HpyF3I	CTNAG	5 cut(s)	51, 129, 258, 291, 324
Hsp92II	CATG	3 cut(s)	240, 433, 475
HspAI	GCGC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	197, 218
Lsp1109I	GCAGC	4 cut(s)	113, 137, 187, 208
LweI	GCATC	2 cut(s)	14, 331
MaeI	CTAG	2 cut(s)	83, 526
MaeIII	GTNAC	2 cut(s)	78, 319
MboII	GAAGA	2 cut(s)	436, 503
MlyI	GAGTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	447
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	9 cut(s)	35, 101, 134, 164, 200, 221, 341, 353, 440
NlaIII	CATG	3 cut(s)	240, 433, 475
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	5 cut(s)	103, 127, 202, 223, 346
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	476
PspPI	GGNCC	3 cut(s)	43, 333, 433
PstNI	CAGNNNCTG	2 cut(s)	200, 221
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	5 cut(s)	102, 126, 201, 222, 345
Sau96I	GGNCC	3 cut(s)	43, 333, 433
SchI	GAGTC	1 cut(s)	86
SfaNI	GCATC	2 cut(s)	14, 331
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	83, 526
StyI	CCWWGG	3 cut(s)	39, 105, 436
TaaI	ACNGT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	4 cut(s)	101, 125, 200, 221
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	510
Van91I	CCANNNNNTGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	83, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.