Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

23442504 .. 23443552

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30371.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGTCCCAAGGTCAGAGGCAGAGCTACAGAGGCCAAGCTCAGGCCGCTCAGGAACACAATAGGCAGGACAGGGAGAAGGACCTGAGCCAAGAGGCGAAGCGGAAGGCGGAAGAGGCGAAGAACAAGACCAGCGAGACTGCGCAACAAGCCAAGGAGAAAACACAGTCTACAATGAGTCAGGTGAAGGACAAGGCGGCGCAGGCGGCAGAGGAGGCAAGACGGAAGGCCCAAGAGGCGGCGGAGAAGGGTAAAGAGACTACCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTCCAGCAGACCGGAGAAACAATGAGGAACGTGGCACAAGGTGCGGCTGATGCTGTGAAGAGCACTATTGGGATGGGCAAGAAAGATGACCAAGATGATCCTTTGTATAAGGGAACTGCTCCTGCTACTACTAGGAGTACTAATACTGGGACTACAGGGGCTCCTGGGACTGGGAACTACCAAGGGAACAGGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

165

Amino Acids

17.69

Weight (kDa)

9.37

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccBSI	CCGCTC	2 cut(s)	50, 288
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	9 cut(s)	48, 103, 110, 197, 206, 239, 242, 288, 338
AclWI	GGATC	1 cut(s)	386
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	43, 238, 270, 464
AjnI	CCWGG	2 cut(s)	264, 457
AluBI	AGCT	2 cut(s)	27, 41
AluI	AGCT	2 cut(s)	27, 41
Alw21I	GWGCWC	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	131, 251
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	4 cut(s)	34, 45, 228, 267
AspLEI	GCGC	2 cut(s)	145, 202
AspS9I	GGNCC	2 cut(s)	82, 229
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	359
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	266, 459
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	131, 251
BfaI	CTAG	2 cut(s)	426, 493
BfmI	CTRYAG	2 cut(s)	28, 447
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	5 cut(s)	48, 198, 207, 240, 339
BlsI	GCNGC	5 cut(s)	49, 199, 208, 241, 340
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	3 cut(s)	266, 271, 459
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	82, 229
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	3 cut(s)	266, 271, 459
BmrI	ACTGGG	2 cut(s)	450, 474
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	2 cut(s)	450, 474
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	3 cut(s)	42, 51, 86
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	5 cut(s)	10, 153, 264, 458, 475
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 238, 270, 464
Bse1I	ACTGG	2 cut(s)	445, 469
BseBI	CCWGG	2 cut(s)	266, 459
BseDI	CCNNGG	5 cut(s)	10, 153, 264, 458, 475
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	43, 238, 270, 464
BseMII	CTCAG	3 cut(s)	56, 65, 77
BseNI	ACTGG	2 cut(s)	445, 469
BseRI	GAGGAG	1 cut(s)	227
BshFI	GGCC	4 cut(s)	36, 47, 230, 269
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	270, 306
BslFI	GGGAC	2 cut(s)	457, 475
BslI	CCNNNNNNNGG	4 cut(s)	43, 238, 270, 464
BsmAI	GTCTC	2 cut(s)	131, 251
BsmFI	GGGAC	2 cut(s)	457, 475
BsnI	GGCC	4 cut(s)	36, 47, 230, 269
Bsp1286I	GDGCHC	2 cut(s)	359, 457
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	9 cut(s)	48, 103, 110, 197, 206, 239, 242, 288, 338
BspANI	GGCC	4 cut(s)	36, 47, 230, 269
BspCNI	CTCAG	3 cut(s)	55, 64, 78
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	347
BsrBI	CCGCTC	2 cut(s)	50, 288
BsrI	ACTGG	2 cut(s)	445, 469
BssECI	CCNNGG	5 cut(s)	10, 153, 264, 458, 475
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	3 cut(s)	10, 153, 475
Bst2UI	CCWGG	2 cut(s)	266, 459
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	2 cut(s)	108, 347
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	3 cut(s)	42, 51, 86
BstF5I	GGATG	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	145, 202
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	2 cut(s)	131, 251
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	266, 459
BstSCI	CCNGG	3 cut(s)	264, 269, 457
BstSFI	CTRYAG	2 cut(s)	28, 447
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	36, 47, 230, 269
BtsCI	GGATG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	2 cut(s)	145, 202
Cfr13I	GGNCC	2 cut(s)	82, 229
Csp6I	GTAC	1 cut(s)	432
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	42, 51, 86
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	108, 347
EarI	CTCTTC	2 cut(s)	108, 347
EciI	GGCGGA	2 cut(s)	125, 257
Eco130I	CCWWGG	3 cut(s)	10, 153, 475
Eco24I	GRGCYC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	264, 457
EcoT14I	CCWWGG	3 cut(s)	10, 153, 475
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	3 cut(s)	10, 153, 475
FaiI	YATR	1 cut(s)	402
FaqI	GGGAC	2 cut(s)	457, 475
FauI	CCCGC	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	5 cut(s)	48, 198, 207, 240, 339
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	5 cut(s)	48, 198, 207, 240, 339
FspBI	CTAG	2 cut(s)	426, 493
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	2 cut(s)	144, 201
GluI	GCNGC	5 cut(s)	48, 198, 207, 240, 339
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	36, 47, 230, 269
HapII	CCGG	2 cut(s)	270, 306
HhaI	GCGC	2 cut(s)	145, 202
Hin6I	GCGC	2 cut(s)	143, 200
HinP1I	GCGC	2 cut(s)	143, 200
HinfI	GANTC	3 cut(s)	5, 178, 292
HpaII	CCGG	2 cut(s)	270, 306
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	6 cut(s)	73, 100, 181, 220, 241, 268
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	324
HpyF3I	CTNAG	3 cut(s)	42, 51, 86
HpySE526I	ACGT	1 cut(s)	324
HspAI	GCGC	2 cut(s)	143, 200
Kzo9I	GATC	1 cut(s)	391
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	418, 460
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	426, 493
MaeII	ACGT	1 cut(s)	324
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	2 cut(s)	50, 288
MboI	GATC	1 cut(s)	391
MboII	GAAGA	4 cut(s)	125, 133, 292, 364
MhlI	GDGCHC	2 cut(s)	359, 457
MlyI	GAGTC	2 cut(s)	14, 187
MnlI	CCTC	8 cut(s)	12, 26, 88, 109, 205, 208, 229, 312
MspI	CCGG	2 cut(s)	270, 306
MspR9I	CCNGG	3 cut(s)	266, 271, 459
MvaI	CCWGG	2 cut(s)	266, 459
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	5 cut(s)	49, 199, 208, 241, 340
PleI	GAGTC	2 cut(s)	13, 186
PpsI	GAGTC	2 cut(s)	13, 186
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	264, 457
PspGI	CCWGG	2 cut(s)	264, 457
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	82, 229
PspPPI	RGGWCCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	347
SatI	GCNGC	5 cut(s)	48, 198, 207, 240, 339
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	82, 229
ScaI	AGTACT	1 cut(s)	433
SchI	GAGTC	2 cut(s)	14, 187
ScrFI	CCNGG	3 cut(s)	266, 271, 459
SduI	GDGCHC	2 cut(s)	359, 457
SetI	ASST	7 cut(s)	16, 29, 43, 87, 186, 327, 337
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	28, 447
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	9 cut(s)	48, 103, 110, 197, 206, 239, 242, 288, 338
SspMI	CTAG	2 cut(s)	426, 493
StyD4I	CCNGG	3 cut(s)	264, 269, 457
StyI	CCWWGG	3 cut(s)	10, 153, 475
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	5 cut(s)	50, 200, 209, 242, 341
TfiI	GAWTC	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	426, 493
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.