Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

55403941 .. 55407737

Gene Structure 3797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG390000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGTCCCACGGTCAGAGACAGAGCTACAGAGGCCAAACTCAGGAACAAAATAGGCAGAACAGGTCACAGGACAGGGACTACGACATGACCCAAGAGGCAAGGCGGAAGGCGGAGGAGGCGGAGGAGGCGAAGAACAAGACCTACGAGACCGCGCAACAAGCCAAGGAGAAAACACAGTCCACAATGAACCAGGTGAAGGACAAGGCGGCGCAGGAGGCAGAGGAGGCAAGGCGGAAGGCCCAAGAGGCGGCGGAGAAGACTAAAGAGACTGCCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTTCAGCAGACCGGAGAAACAATGAAGAACGTTGCACAAGGTGCGGCTGATGCTGTGAGGAGCACTATTGGGATGGCCAAGAACGATGACCAGGATGATCCTTATTATAGGGAGACTACTACCACTACCAGGACTAATACTGGGACTACAGGGGCTCCTGGGACTGGGAATTACCCAAGGAATAGGAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

166

Amino Acids

18.66

Weight (kDa)

7.85

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	155
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
AjnI	CCWGG	5 cut(s)	192, 276, 396, 434, 463
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	4 cut(s)	13, 143, 263, 413
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	4 cut(s)	34, 240, 279, 381
AspLEI	GCGC	2 cut(s)	157, 214
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	266, 299
Bbv12I	GWGCWC	1 cut(s)	371
BccI	CCATC	1 cut(s)	373
BciT130I	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	4 cut(s)	13, 143, 263, 413
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	2 cut(s)	28, 453
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	210, 252, 351
BlsI	GCNGC	3 cut(s)	211, 253, 352
Bme1390I	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
BmrI	ACTGGG	2 cut(s)	456, 480
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	2 cut(s)	456, 480
BpiI	GAAGAC	2 cut(s)	266, 299
BpuMI	CCSGG	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
Bse1I	ACTGG	2 cut(s)	451, 475
BseBI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BseDI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BseGI	GGATG	2 cut(s)	384, 406
BseLI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	451, 475
BseRI	GAGGAG	4 cut(s)	131, 140, 239, 379
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	4 cut(s)	36, 242, 281, 383
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	282, 318
BslFI	GGGAC	3 cut(s)	92, 463, 481
BslI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
BsmAI	GTCTC	4 cut(s)	13, 143, 263, 413
BsmFI	GGGAC	3 cut(s)	92, 463, 481
BsnI	GGCC	4 cut(s)	36, 242, 281, 383
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	371, 463
Bsp143I	GATC	1 cut(s)	403
BspANI	GGCC	4 cut(s)	36, 242, 281, 383
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	451, 475
BssECI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BssMI	GATC	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	165, 482
Bst2UI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
Bst4CI	ACNGT	2 cut(s)	14, 180
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	384, 406
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	157, 214
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	4 cut(s)	13, 143, 263, 413
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	9 cut(s)	33, 119, 128, 161, 218, 227, 248, 347, 356
BstNI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BstSCI	CCNGG	6 cut(s)	192, 276, 281, 396, 434, 463
BstSFI	CTRYAG	2 cut(s)	28, 453
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	2 cut(s)	266, 299
BsuRI	GGCC	4 cut(s)	36, 242, 281, 383
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	384, 406
CfoI	GCGC	2 cut(s)	157, 214
Cfr13I	GGNCC	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	192
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	8 cut(s)	27, 36, 164, 242, 281, 353, 383, 461
CviKI_1	RGCY	8 cut(s)	27, 36, 164, 242, 281, 353, 383, 461
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	381
EciI	GGCGGA	5 cut(s)	121, 128, 137, 250, 269
Eco130I	CCWWGG	2 cut(s)	165, 482
Eco24I	GRGCYC	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	293
EcoRII	CCWGG	5 cut(s)	192, 276, 396, 434, 463
EcoT14I	CCWWGG	2 cut(s)	165, 482
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	165, 482
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 414
FaqI	GGGAC	3 cut(s)	92, 463, 481
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	210, 252, 351
FokI	GGATG	2 cut(s)	391, 413
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	3 cut(s)	210, 252, 351
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	2 cut(s)	156, 213
GluI	GCNGC	3 cut(s)	210, 252, 351
HaeIII	GGCC	4 cut(s)	36, 242, 281, 383
HapII	CCGG	2 cut(s)	282, 318
HhaI	GCGC	2 cut(s)	157, 214
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	2 cut(s)	155, 212
HinP1I	GCGC	2 cut(s)	155, 212
HinfI	GANTC	2 cut(s)	5, 304
HpaII	CCGG	2 cut(s)	282, 318
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	4 cut(s)	103, 193, 232, 280
HpyCH4III	ACNGT	2 cut(s)	14, 180
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	9 cut(s)	33, 119, 128, 161, 218, 227, 248, 347, 356
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	2 cut(s)	155, 212
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	366, 466
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	405
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	1 cut(s)	403
MboII	GAAGA	5 cut(s)	145, 271, 299, 304, 343
MhlI	GDGCHC	2 cut(s)	371, 463
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	1 cut(s)	475
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	14
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	2 cut(s)	282, 318
MspR9I	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
MvaI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	9 cut(s)	33, 119, 128, 161, 218, 227, 248, 347, 356
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	211, 253, 352
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	5 cut(s)	192, 276, 396, 434, 463
PspGI	CCWGG	5 cut(s)	192, 276, 396, 434, 463
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
SatI	GCNGC	3 cut(s)	210, 252, 351
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
SduI	GDGCHC	2 cut(s)	371, 463
SetI	ASST	6 cut(s)	29, 68, 146, 198, 339, 349
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	28, 453
Sse9I	AATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	6 cut(s)	192, 276, 281, 396, 434, 463
StyI	CCWWGG	2 cut(s)	165, 482
TaaI	ACNGT	2 cut(s)	14, 180
TaiI	ACGT	1 cut(s)	339
TasI	AATT	1 cut(s)	475
TauI	GCSGC	3 cut(s)	212, 254, 353
TfiI	GAWTC	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	203, 344
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.