Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

61499925 .. 61500383

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGGAGTCACTAGAGGAGAAGGCTCAAGCAGCAAAGGACAAGACCTACCAAGCAGCTCAAACAGCCAAAGAGAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGGCAGGAGTTACAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGGGCCTCCGAGGCAGCGCAGAGAGCCAGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGAAAGGGCGTTGGAGGCTGCCCAGAGAGCCGGAGATTCAGCCGAGTCTGGCAAGGAGAGAAGTGAGGGGTTCCTCCAACAGACTGGAGAACAGATGAAGAACATGGCCCAAGGTGTTGTTGATACTGCGACAGGCACCCTCGGCCTGGCCAAGGATGATGAGGAAGATGAACCTGTTTATTATAAGAGGGACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

153

Amino Acids

16.73

Weight (kDa)

6.66

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	121, 403, 409
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	155, 242
AoxI	GGCC	5 cut(s)	111, 177, 363, 400, 405
ApeKI	GCWGC	4 cut(s)	32, 56, 188, 275
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	112, 177, 364
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	44, 68, 200, 262
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	155, 242
BfaI	CTAG	2 cut(s)	14, 457
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	33, 57, 189, 276
BlsI	GCNGC	4 cut(s)	34, 58, 190, 277
Bme1390I	CCNGG	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	112, 177, 364
BmiI	GGNNCC	2 cut(s)	329, 394
BmrFI	CCNGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	183, 367, 397, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 403, 409
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	4 cut(s)	183, 367, 397, 408
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	121, 403, 409
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	4 cut(s)	44, 68, 200, 262
BshFI	GGCC	5 cut(s)	113, 179, 365, 402, 407
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	121, 403, 409
BsmAI	GTCTC	2 cut(s)	155, 242
BsnI	GGCC	5 cut(s)	113, 179, 365, 402, 407
BspANI	GGCC	5 cut(s)	113, 179, 365, 402, 407
BspLI	GGNNCC	2 cut(s)	329, 394
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	4 cut(s)	183, 367, 397, 408
BssT1I	CCWWGG	2 cut(s)	367, 408
Bst2UI	CCWGG	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	168, 255
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	155, 242
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 65, 95, 185, 197, 218, 272, 284, 399
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	44, 68, 200, 262
BstXI	CCANNNNNNTGG	1 cut(s)	341
BsuRI	GGCC	5 cut(s)	113, 179, 365, 402, 407
BtsCI	GGATG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	3 cut(s)	112, 177, 364
CviAII	CATG	3 cut(s)	147, 234, 361
DdeI	CTNAG	2 cut(s)	168, 255
EaeI	YGGCCR	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	367, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	367, 408
ErhI	CCWWGG	2 cut(s)	367, 408
FaeI	CATG	3 cut(s)	150, 237, 364
FaiI	YATR	4 cut(s)	148, 235, 362, 441
FatI	CATG	3 cut(s)	146, 233, 360
Fnu4HI	GCNGC	4 cut(s)	33, 57, 189, 276
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	33, 57, 189, 276
FspBI	CTAG	2 cut(s)	14, 457
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	33, 57, 189, 276
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	113, 179, 365, 402, 407
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	150, 237, 364
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	8, 293, 302
HpaII	CCGG	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	16, 115, 202
HpyCH4V	TGCA	2 cut(s)	89, 221
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 65, 95, 185, 197, 218, 272, 284, 399
HpyF3I	CTNAG	2 cut(s)	168, 255
Hsp92II	CATG	3 cut(s)	150, 237, 364
HspAI	GCGC	1 cut(s)	191
Lsp1109I	GCAGC	4 cut(s)	44, 68, 200, 262
MaeI	CTAG	2 cut(s)	14, 457
MaeIII	GTNAC	2 cut(s)	9, 130
MboII	GAAGA	2 cut(s)	367, 434
MlsI	TGGCCA	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	17, 311
MmeI	TCCRAC	2 cut(s)	249, 358
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	9 cut(s)	32, 65, 95, 185, 197, 218, 272, 284, 399
NlaIII	CATG	3 cut(s)	150, 237, 364
NlaIV	GGNNCC	2 cut(s)	329, 394
NmeAIII	GCCGAG	2 cut(s)	325, 378
NmuCI	GTSAC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	34, 58, 190, 277
PleI	GAGTC	2 cut(s)	16, 310
PpsI	GAGTC	2 cut(s)	16, 310
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	329, 394
PspPI	GGNCC	3 cut(s)	112, 177, 364
SatI	GCNGC	4 cut(s)	33, 57, 189, 276
Sau96I	GGNCC	3 cut(s)	112, 177, 364
SchI	GAGTC	2 cut(s)	17, 311
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	5 cut(s)	50, 61, 88, 373, 433
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SspMI	CTAG	2 cut(s)	14, 457
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	367, 408
TfiI	GAWTC	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	4 cut(s)	32, 56, 188, 275
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	3 cut(s)	17, 368, 441
XagI	CCTNNNNNAGG	1 cut(s)	407
XspI	CTAG	2 cut(s)	14, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.