Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

90280720 .. 90281701

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG526400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCATCCGACAAACAGAGCTACAGAGCTGGTGAAACCAAGGGCCAGACTGAGGAAAAGGCGAACCAGATGATGGAGTCACTAGGGGAGAAGGCTCAAGCAGCAAAGGACAAGACCTACCAGGCAGCTCAAACAGCCAAAGAGAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGGCAGGAGTTACAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGGGCCTCCGAGGCGGCGCAAAGAGCTGGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCACGGGAGAGCAAGGAGACAACTAAGGATAGGGCGTCGGAGGCTGCCCAGAGAGCCGGAGATTCGGCCGAGTCTGGCAAGGAGAGAAGTGAGGGGTTTCTCCAACAGACTGGAGAACAGATGAAGAACATGGCCCAAGGTGCTGTTGATACTGTGAAAGGTACCCTCGGCCTGGCCAAGGATGATGAGGAAGATGAACCTGTTTATTATAAGAGGGACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

175

Amino Acids

19.06

Weight (kDa)

7.78

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	366, 474
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 472, 478
AjnI	CCWGG	2 cut(s)	120, 471
AluBI	AGCT	4 cut(s)	21, 29, 128, 269
AluI	AGCT	4 cut(s)	21, 29, 128, 269
Alw26I	GTCTC	2 cut(s)	224, 311
AoxI	GGCC	7 cut(s)	43, 180, 246, 366, 432, 469, 474
ApeKI	GCWGC	3 cut(s)	101, 125, 344
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	4 cut(s)	43, 181, 246, 433
AsuHPI	GGTGA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	113, 137, 331
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	122, 473
BcoDI	GTCTC	2 cut(s)	224, 311
BfaI	CTAG	2 cut(s)	83, 526
BfmI	CTRYAG	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	102, 126, 258, 345
BlsI	GCNGC	4 cut(s)	103, 127, 259, 346
Bme1390I	CCNGG	2 cut(s)	122, 473
BmgT120I	GGNCC	4 cut(s)	43, 181, 246, 433
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	122, 473
BmsI	GCATC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	291, 432
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	5 cut(s)	39, 252, 436, 466, 477
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 472, 478
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	122, 473
BseDI	CCNNGG	5 cut(s)	39, 252, 436, 466, 477
BseGI	GGATG	2 cut(s)	5, 487
BseLI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 472, 478
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	415
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	113, 137, 331
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	7 cut(s)	45, 182, 248, 368, 434, 471, 476
BshNI	GGYRCC	1 cut(s)	461
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	52, 73, 190, 472, 478
BsmAI	GTCTC	2 cut(s)	224, 311
BsnI	GGCC	7 cut(s)	45, 182, 248, 368, 434, 471, 476
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	7 cut(s)	45, 182, 248, 368, 434, 471, 476
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	5 cut(s)	39, 252, 436, 466, 477
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	3 cut(s)	39, 436, 477
Bst2UI	CCWGG	2 cut(s)	122, 473
Bst4CI	ACNGT	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	51, 237, 324
BstENI	CCTNNNNNAGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	5, 487
BstHHI	GCGC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	224, 311
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 134, 164, 254, 266, 287, 341, 353, 440
BstNI	CCWGG	2 cut(s)	122, 473
BstSCI	CCNGG	2 cut(s)	120, 471
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	113, 137, 331
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	7 cut(s)	45, 182, 248, 368, 434, 471, 476
BtsCI	GGATG	2 cut(s)	5, 487
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	4 cut(s)	43, 181, 246, 433
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	2 cut(s)	216, 430
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	51, 237, 324
EaeI	YGGCCR	2 cut(s)	366, 474
EagI	CGGCCG	1 cut(s)	366
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	3 cut(s)	39, 436, 477
Eco52I	CGGCCG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	120, 471
EcoT14I	CCWWGG	3 cut(s)	39, 436, 477
ErhI	CCWWGG	3 cut(s)	39, 436, 477
FaeI	CATG	2 cut(s)	219, 433
FaiI	YATR	3 cut(s)	217, 431, 510
FatI	CATG	2 cut(s)	215, 429
Fnu4HI	GCNGC	4 cut(s)	102, 126, 258, 345
FokI	GGATG	1 cut(s)	494
Fsp4HI	GCNGC	4 cut(s)	102, 126, 258, 345
FspBI	CTAG	2 cut(s)	83, 526
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	4 cut(s)	102, 126, 258, 345
GsuI	CTGGAG	2 cut(s)	291, 432
HaeIII	GGCC	7 cut(s)	45, 182, 248, 368, 434, 471, 476
HapII	CCGG	1 cut(s)	357
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	219, 433
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	77, 362, 371
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	10, 253, 340
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	85, 184, 271
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	2 cut(s)	158, 290
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 134, 164, 254, 266, 287, 341, 353, 440
HpyF3I	CTNAG	3 cut(s)	51, 237, 324
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	219, 433
HspAI	GCGC	1 cut(s)	260
KpnI	GGTACC	1 cut(s)	465
Lsp1109I	GCAGC	3 cut(s)	113, 137, 331
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	83, 526
MaeIII	GTNAC	2 cut(s)	78, 199
MboII	GAAGA	2 cut(s)	436, 503
MlsI	TGGCCA	1 cut(s)	476
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	86, 380
MmeI	TCCRAC	3 cut(s)	33, 318, 427
MnlI	CCTC	9 cut(s)	46, 146, 247, 259, 334, 385, 476, 481, 507
Mox20I	TGGCCA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	122, 473
MvaI	CCWGG	2 cut(s)	122, 473
MwoI	GCNNNNNNNGC	9 cut(s)	101, 134, 164, 254, 266, 287, 341, 353, 440
NlaIII	CATG	2 cut(s)	219, 433
NlaIV	GGNNCC	1 cut(s)	463
NmeAIII	GCCGAG	2 cut(s)	394, 447
NmuCI	GTSAC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	103, 127, 259, 346
PleI	GAGTC	2 cut(s)	85, 379
PpsI	GAGTC	2 cut(s)	85, 379
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	120, 471
PspGI	CCWGG	2 cut(s)	120, 471
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	4 cut(s)	43, 181, 246, 433
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SatI	GCNGC	4 cut(s)	102, 126, 258, 345
Sau96I	GGNCC	4 cut(s)	43, 181, 246, 433
SchI	GAGTC	2 cut(s)	86, 380
ScrFI	CCNGG	2 cut(s)	122, 473
SetI	ASST	9 cut(s)	23, 31, 119, 130, 157, 271, 442, 463, 502
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	83, 526
StyD4I	CCNGG	2 cut(s)	120, 471
StyI	CCWWGG	3 cut(s)	39, 436, 477
TaaI	ACNGT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	3 cut(s)	101, 125, 344
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	437, 510
Van91I	CCANNNNNTGG	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	476
XspI	CTAG	2 cut(s)	83, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.