Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Reverse (-)

87187218 .. 87188357

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAGTGGCTATGGCTATGGCTTTCATTCCCATCACATCAAAGCAAACAAGAAGAAAAACACACTCACAGAGGTTTAGCTATCACTCAGAAGTTCAGAACTTATAGATCCATCACTCGGAAGCAAACAATGGCATCCCACAAACAGAGCTACAGAGCTGGTGAAACCAAGGGCCAGACTGAGGAAAAGGCGAACCAGATGATGGAGTCACTAGGGGAGAAGGCTCAAGCAGCAAAGGACAAGACCTACCAGGCAGCTCAAACAGCCAAAGAGAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGACAGGAGTTACAAAAGACAAGGCATGGGAGAGCAAGGAGACAACAAAGGATAGGGCCTCCCAGGCGGCGCAAAGAGCTGGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGAGCGTCGGAGGCTGCCCAGAGAGCCGGAGATTCGGCCGAGTCTGGCAAGGAGAGAAGTGAGGGTTTCCTCCAACAGACTGGAGAACAGATGAAGAACATGGCCCAGGGTGCTGTTGATACTGTGAAAGGCACCCTCGGCCTGGCCAAGGATGATGAGGAAGATGAACCTGTTTATCATAAGAGGGACAGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

218

Amino Acids

24.47

Weight (kDa)

9.44

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	495, 603
AfiI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 601, 607
AjnI	CCWGG	4 cut(s)	249, 381, 564, 600
AluBI	AGCT	5 cut(s)	80, 150, 158, 257, 398
AluI	AGCT	5 cut(s)	80, 150, 158, 257, 398
Alw26I	GTCTC	2 cut(s)	353, 440
AlwI	GGATC	1 cut(s)	102
AoxI	GGCC	7 cut(s)	172, 309, 375, 495, 561, 598, 603
ApeKI	GCWGC	3 cut(s)	230, 254, 473
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	172, 310, 375, 562
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	242, 266, 460
BccI	CCATC	3 cut(s)	40, 119, 196
BciT130I	CCWGG	4 cut(s)	251, 383, 566, 602
BcoDI	GTCTC	2 cut(s)	353, 440
BfaI	CTAG	2 cut(s)	212, 655
BfmI	CTRYAG	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	383
BisI	GCNGC	4 cut(s)	231, 255, 387, 474
BlsI	GCNGC	4 cut(s)	232, 256, 388, 475
Bme1390I	CCNGG	4 cut(s)	251, 383, 566, 602
BmgT120I	GGNCC	4 cut(s)	172, 310, 375, 562
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	4 cut(s)	251, 383, 566, 602
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	2 cut(s)	420, 561
BpuEI	CTTGAG	1 cut(s)	210
BsaJI	CCNNGG	6 cut(s)	168, 381, 564, 565, 595, 606
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 601, 607
Bse1I	ACTGG	1 cut(s)	544
BseBI	CCWGG	4 cut(s)	251, 383, 566, 602
BseDI	CCNNGG	6 cut(s)	168, 381, 564, 565, 595, 606
BseGI	GGATG	2 cut(s)	134, 616
BseLI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 601, 607
BseMII	CTCAG	2 cut(s)	101, 171
BseNI	ACTGG	1 cut(s)	544
BseX3I	CGGCCG	1 cut(s)	495
BseXI	GCAGC	3 cut(s)	242, 266, 460
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	7 cut(s)	174, 311, 377, 497, 563, 600, 605
BshNI	GGYRCC	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	486
BslI	CCNNNNNNNGG	5 cut(s)	117, 181, 202, 601, 607
BsmAI	GTCTC	2 cut(s)	353, 440
BsnI	GGCC	7 cut(s)	174, 311, 377, 497, 563, 600, 605
Bsp143I	GATC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	7 cut(s)	174, 311, 377, 497, 563, 600, 605
BspCNI	CTCAG	2 cut(s)	100, 172
BspLI	GGNNCC	1 cut(s)	592
BspPI	GGATC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	6 cut(s)	168, 381, 564, 565, 595, 606
BssMI	GATC	1 cut(s)	107
BssT1I	CCWWGG	2 cut(s)	168, 606
Bst2UI	CCWGG	4 cut(s)	251, 383, 566, 602
Bst4CI	ACNGT	1 cut(s)	583
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	87, 180, 453
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	2 cut(s)	134, 616
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	353, 440
BstMBI	GATC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	498
BstNI	CCWGG	4 cut(s)	251, 383, 566, 602
BstSCI	CCNGG	4 cut(s)	249, 381, 564, 600
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	242, 266, 460
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	495
BsuRI	GGCC	7 cut(s)	174, 311, 377, 497, 563, 600, 605
BtsCI	GGATG	2 cut(s)	134, 616
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	172, 310, 375, 562
CseI	GACGC	1 cut(s)	453
CviAII	CATG	3 cut(s)	345, 432, 559
DdeI	CTNAG	3 cut(s)	87, 180, 453
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
EaeI	YGGCCR	2 cut(s)	495, 603
EagI	CGGCCG	1 cut(s)	495
EclXI	CGGCCG	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	168, 606
Eco52I	CGGCCG	1 cut(s)	495
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	4 cut(s)	249, 381, 564, 600
EcoT14I	CCWWGG	2 cut(s)	168, 606
ErhI	CCWWGG	2 cut(s)	168, 606
FaeI	CATG	3 cut(s)	348, 435, 562
FaiI	YATR	7 cut(s)	13, 19, 105, 346, 433, 560, 639
FatI	CATG	3 cut(s)	344, 431, 558
Fnu4HI	GCNGC	4 cut(s)	231, 255, 387, 474
FokI	GGATG	2 cut(s)	121, 623
Fsp4HI	GCNGC	4 cut(s)	231, 255, 387, 474
FspBI	CTAG	2 cut(s)	212, 655
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	4 cut(s)	231, 255, 387, 474
GsuI	CTGGAG	2 cut(s)	420, 561
HaeIII	GGCC	7 cut(s)	174, 311, 377, 497, 563, 600, 605
HapII	CCGG	1 cut(s)	486
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	3 cut(s)	348, 435, 562
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	3 cut(s)	206, 491, 500
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	90, 98, 120, 469
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	214, 400
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	3 cut(s)	4, 287, 419
HpyF3I	CTNAG	3 cut(s)	87, 180, 453
Hsp92II	CATG	3 cut(s)	348, 435, 562
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	107
Lsp1109I	GCAGC	3 cut(s)	242, 266, 460
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	212, 655
MaeIII	GTNAC	2 cut(s)	207, 328
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	4 cut(s)	65, 331, 565, 632
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	605
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	2 cut(s)	215, 509
MmeI	TCCRAC	2 cut(s)	447, 556
Mox20I	TGGCCA	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	605
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	4 cut(s)	251, 383, 566, 602
MvaI	CCWGG	4 cut(s)	251, 383, 566, 602
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	348, 435, 562
NlaIV	GGNNCC	1 cut(s)	592
NmeAIII	GCCGAG	2 cut(s)	523, 576
NmuCI	GTSAC	1 cut(s)	207
PasI	CCCWGGG	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	232, 256, 388, 475
PleI	GAGTC	2 cut(s)	214, 508
PpsI	GAGTC	2 cut(s)	214, 508
Psp6I	CCWGG	4 cut(s)	249, 381, 564, 600
PspGI	CCWGG	4 cut(s)	249, 381, 564, 600
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	4 cut(s)	172, 310, 375, 562
PsuI	RGATCY	1 cut(s)	107
SatI	GCNGC	4 cut(s)	231, 255, 387, 474
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	4 cut(s)	172, 310, 375, 562
SchI	GAGTC	2 cut(s)	215, 509
ScrFI	CCNGG	4 cut(s)	251, 383, 566, 602
SetI	ASST	9 cut(s)	76, 82, 152, 160, 248, 259, 286, 400, 631
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	212, 655
StyD4I	CCNGG	4 cut(s)	249, 381, 564, 600
StyI	CCWWGG	2 cut(s)	168, 606
TaaI	ACNGT	1 cut(s)	583
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	3 cut(s)	230, 254, 473
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	15, 566, 639
Van91I	CCANNNNNTGG	1 cut(s)	202
XagI	CCTNNNNNAGG	1 cut(s)	605
XspI	CTAG	2 cut(s)	212, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.