Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

2713955 .. 2714963

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCATCCCATAAACAGAGCTACAGAGCTGGTGAAACCAAGGGCCAGACTGAGGAAAAGGCGAACCAGATGATGGAGTCACTAGGGGAGAAGGCTCAAGCAGCAAAGGACAAGACCTACCAGGCAGCTCAAACAGCCAAAGAGAAAACAAGAGGTGCAACCCAAGCAACTACCCACAAGGCCCAAGAGAAGGCAGGAGTTACAAAAGACAAGGCATGGGAGAGCAAGGAGACAACTAAGGATAGGGCCTCCGAGGCGGCGCAAGGAGCCGGAGAGAAGGCAGGAGTTGCAAAAGACAAGGCATGGCAGAGCAAGGAGACAACTAAGGATAGGGCGTCGGAGGCTGCCCAGAGAGCCGGAGATTCGGCCGAGTCTGGCAAGGAGAGAAGTGAGGGGAGGGGTTCCTCCAACAGACTGGAGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

142

Amino Acids

15.28

Weight (kDa)

9.44

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	21, 29, 128
AluI	AGCT	3 cut(s)	21, 29, 128
Alw26I	GTCTC	2 cut(s)	224, 311
AoxI	GGCC	4 cut(s)	43, 180, 246, 366
ApeKI	GCWGC	3 cut(s)	101, 125, 344
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	3 cut(s)	43, 181, 246
AsuHPI	GGTGA	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	113, 137, 331
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	224, 311
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	102, 126, 258, 345
BlsI	GCNGC	4 cut(s)	103, 127, 259, 346
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	43, 181, 246
BmiI	GGNNCC	2 cut(s)	268, 403
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	39, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 73, 190
Bse1I	ACTGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	39, 252
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	420
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	113, 137, 331
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	45, 182, 248, 368
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	270, 357
BslI	CCNNNNNNNGG	3 cut(s)	52, 73, 190
BsmAI	GTCTC	2 cut(s)	224, 311
BsnI	GGCC	4 cut(s)	45, 182, 248, 368
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	4 cut(s)	45, 182, 248, 368
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	268, 403
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	39, 252
BssNI	GRCGYC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	51, 237, 324
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	224, 311
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 254, 266, 287, 341, 353
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	113, 137, 331
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	45, 182, 248, 368
BtsCI	GGATG	1 cut(s)	5
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	43, 181, 246
CseI	GACGC	1 cut(s)	324
CviAII	CATG	2 cut(s)	216, 303
DdeI	CTNAG	3 cut(s)	51, 237, 324
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	39
Eco52I	CGGCCG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	219, 306
FaiI	YATR	3 cut(s)	12, 217, 304
FatI	CATG	2 cut(s)	215, 302
Fnu4HI	GCNGC	4 cut(s)	102, 126, 258, 345
Fsp4HI	GCNGC	4 cut(s)	102, 126, 258, 345
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	4 cut(s)	102, 126, 258, 345
HaeIII	GGCC	4 cut(s)	45, 182, 248, 368
HapII	CCGG	2 cut(s)	270, 357
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	2 cut(s)	219, 306
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	77, 362, 371
HpaII	CCGG	2 cut(s)	270, 357
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	253, 340
Hpy99I	CGWCG	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	85, 184, 271
HpyCH4V	TGCA	2 cut(s)	158, 290
HpyF10VI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 254, 266, 287, 341, 353
HpyF3I	CTNAG	3 cut(s)	51, 237, 324
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	219, 306
HspAI	GCGC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	3 cut(s)	113, 137, 331
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	78, 199
MlyI	GAGTC	2 cut(s)	86, 380
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	8 cut(s)	46, 146, 247, 259, 334, 385, 390, 415
MspI	CCGG	2 cut(s)	270, 357
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	8 cut(s)	101, 134, 164, 254, 266, 287, 341, 353
NlaIII	CATG	2 cut(s)	219, 306
NlaIV	GGNNCC	2 cut(s)	268, 403
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	103, 127, 259, 346
PleI	GAGTC	2 cut(s)	85, 379
PpsI	GAGTC	2 cut(s)	85, 379
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	268, 403
PspPI	GGNCC	3 cut(s)	43, 181, 246
SatI	GCNGC	4 cut(s)	102, 126, 258, 345
Sau96I	GGNCC	3 cut(s)	43, 181, 246
SchI	GAGTC	2 cut(s)	86, 380
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	5 cut(s)	23, 31, 119, 130, 157
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	39
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	3 cut(s)	101, 125, 344
Tsp45I	GTSAC	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.