Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006440.1

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

55090 .. 55709

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006440.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggagtcccacggtcagagacagagctacagaggccaaactcaggaaaaaaataggcagaacaggtcacaggacagggactacgacatgacccaagaggcaaggcggaaggcggaggaggcggaggaggcgaagaacaagacctacgagaccgcgcaacaagccaaggagaaaacacagtccacaatgaaccaggtgaaggacaaggcggaacaggaggcagaggaggcaaggcggaacgcccaagaggcggcggaaaagactaaagagactgcccaggccgggaaggagaagacgagcgggattcttcagcagaccggagaaacaatgaagaacgttgcacaaggtgcggctgatgctgtgaggagcactattgggatggccaagaacgatgaccaggatgatccttattatagggagactactaccactaccaggactaatactgggactacaggggctcctgggactgggaattacccaaggaataggaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

166

Amino Acids

18.71

Weight (kDa)

6.65

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	155
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
AjnI	CCWGG	5 cut(s)	192, 276, 396, 434, 463
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	4 cut(s)	13, 143, 263, 413
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	3 cut(s)	34, 279, 381
AspLEI	GCGC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	371
BccI	CCATC	1 cut(s)	373
BciT130I	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	4 cut(s)	13, 143, 263, 413
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	2 cut(s)	28, 453
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	252, 351
BlsI	GCNGC	2 cut(s)	253, 352
Bme1390I	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
BmrI	ACTGGG	2 cut(s)	456, 480
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	2 cut(s)	456, 480
BpiI	GAAGAC	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
Bse1I	ACTGG	2 cut(s)	451, 475
BseBI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BseDI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BseGI	GGATG	2 cut(s)	384, 406
BseLI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	451, 475
BseRI	GAGGAG	4 cut(s)	131, 140, 239, 379
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	36, 281, 383
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	282, 318
BslFI	GGGAC	3 cut(s)	92, 463, 481
BslI	CCNNNNNNNGG	6 cut(s)	43, 199, 250, 282, 435, 470
BsmAI	GTCTC	4 cut(s)	13, 143, 263, 413
BsmFI	GGGAC	3 cut(s)	92, 463, 481
BsnI	GGCC	3 cut(s)	36, 281, 383
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	371, 463
Bsp143I	GATC	1 cut(s)	403
BspANI	GGCC	3 cut(s)	36, 281, 383
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	451, 475
BssECI	CCNNGG	5 cut(s)	10, 165, 276, 464, 482
BssMI	GATC	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	165, 482
Bst2UI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
Bst4CI	ACNGT	2 cut(s)	14, 180
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	384, 406
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	4 cut(s)	13, 143, 263, 413
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 119, 128, 161, 227, 248, 347, 356
BstNI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
BstSCI	CCNGG	6 cut(s)	192, 276, 281, 396, 434, 463
BstSFI	CTRYAG	2 cut(s)	28, 453
BstUI	CGCG	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	36, 281, 383
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	384, 406
CfoI	GCGC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	192
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	27, 36, 164, 281, 353, 383, 461
CviKI_1	RGCY	7 cut(s)	27, 36, 164, 281, 353, 383, 461
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	381
EciI	GGCGGA	6 cut(s)	121, 128, 137, 224, 250, 269
Eco130I	CCWWGG	2 cut(s)	165, 482
Eco24I	GRGCYC	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	293
EcoRII	CCWGG	5 cut(s)	192, 276, 396, 434, 463
EcoT14I	CCWWGG	2 cut(s)	165, 482
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	2 cut(s)	165, 482
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 414
FaqI	GGGAC	3 cut(s)	92, 463, 481
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	252, 351
FokI	GGATG	2 cut(s)	391, 413
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	2 cut(s)	252, 351
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	252, 351
HaeIII	GGCC	3 cut(s)	36, 281, 383
HapII	CCGG	2 cut(s)	282, 318
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	2 cut(s)	5, 304
HpaII	CCGG	2 cut(s)	282, 318
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	103, 193, 280
HpyCH4III	ACNGT	2 cut(s)	14, 180
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 119, 128, 161, 227, 248, 347, 356
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	366, 466
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	192
MaeI	CTAG	1 cut(s)	499
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	405
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	1 cut(s)	403
MboII	GAAGA	4 cut(s)	145, 299, 304, 343
MhlI	GDGCHC	2 cut(s)	371, 463
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	1 cut(s)	475
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	14
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	2 cut(s)	282, 318
MspR9I	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
MvaI	CCWGG	5 cut(s)	194, 278, 398, 436, 465
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	8 cut(s)	33, 119, 128, 161, 227, 248, 347, 356
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	253, 352
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	5 cut(s)	192, 276, 396, 434, 463
PspGI	CCWGG	5 cut(s)	192, 276, 396, 434, 463
PspN4I	GGNNCC	1 cut(s)	462
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
SatI	GCNGC	2 cut(s)	252, 351
Sau3AI	GATC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	6 cut(s)	194, 278, 283, 398, 436, 465
SduI	GDGCHC	2 cut(s)	371, 463
SetI	ASST	6 cut(s)	29, 68, 146, 198, 339, 349
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	2 cut(s)	28, 453
Sse9I	AATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	6 cut(s)	192, 276, 281, 396, 434, 463
StyI	CCWWGG	2 cut(s)	165, 482
TaaI	ACNGT	2 cut(s)	14, 180
TaiI	ACGT	1 cut(s)	339
TasI	AATT	1 cut(s)	475
TauI	GCSGC	2 cut(s)	254, 353
TfiI	GAWTC	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	203, 344
XspI	CTAG	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.