Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

50214214 .. 50214808

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGTCCCACGGTCAGAGACAGAGCTACAGAGGCCAAACTCAGGAACAAAATAGGCAGAACAGGTCACAGGACAGGGACTACGACATGACCCAAGAGGCAAGGCGGAAGGCGGAGGAGGCGAAGAACAAGACCTACGAGACCGCGCAACAAGCAGCCAAGGAGAAAACACAGTCCACAATGAACCAGGTGAAGGACAAGGCGGCGCAGGAGGCAGAGGAGGCGCGGCGGAAGGCCCAAGAGGCGGCGGAGAAGACTAAAGAGACTGCCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTTCAGCAGACCGGAGAAACAATGAAGAACGTTGCACAAGGTGCGGCTGATGCTGTGAGGAGCACTATTGGGATGGCCAAGAACGATGACCAGGATGATCCTTATTATAGGGAGACTAATACCACTACTAGGACTAATACTGGGACTACAGGGGCTCCTGGGACTGGGAATTACCCAAGGAATAGGAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

164

Amino Acids

18.42

Weight (kDa)

9.02

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	2 cut(s)	146, 226
AclI	AACGTT	1 cut(s)	330
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	341
AfiI	CCNNNNNNNGG	6 cut(s)	43, 193, 244, 276, 429, 464
AjnI	CCWGG	4 cut(s)	186, 270, 390, 457
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	4 cut(s)	13, 134, 257, 407
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	4 cut(s)	34, 234, 273, 375
ApeKI	GCWGC	1 cut(s)	155
AspLEI	GCGC	3 cut(s)	148, 208, 226
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	2 cut(s)	260, 293
Bbv12I	GWGCWC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	4 cut(s)	188, 272, 392, 459
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	4 cut(s)	13, 134, 257, 407
BfaI	CTAG	2 cut(s)	429, 493
BfmI	CTRYAG	2 cut(s)	28, 447
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	156, 204, 227, 246, 345
BlsI	GCNGC	5 cut(s)	157, 205, 228, 247, 346
Bme1390I	CCNGG	5 cut(s)	188, 272, 277, 392, 459
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	5 cut(s)	188, 272, 277, 392, 459
BmrI	ACTGGG	2 cut(s)	450, 474
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	2 cut(s)	450, 474
BpiI	GAAGAC	2 cut(s)	260, 293
BpuMI	CCSGG	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	5 cut(s)	10, 159, 270, 458, 476
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 193, 244, 276, 429, 464
Bse1I	ACTGG	2 cut(s)	445, 469
BseBI	CCWGG	4 cut(s)	188, 272, 392, 459
BseDI	CCNNGG	5 cut(s)	10, 159, 270, 458, 476
BseGI	GGATG	2 cut(s)	378, 400
BseLI	CCNNNNNNNGG	6 cut(s)	43, 193, 244, 276, 429, 464
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	445, 469
BseRI	GAGGAG	3 cut(s)	131, 233, 373
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	146, 226
BshFI	GGCC	4 cut(s)	36, 236, 275, 377
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	276, 312
BslFI	GGGAC	3 cut(s)	92, 457, 475
BslI	CCNNNNNNNGG	6 cut(s)	43, 193, 244, 276, 429, 464
BsmAI	GTCTC	4 cut(s)	13, 134, 257, 407
BsmFI	GGGAC	3 cut(s)	92, 457, 475
BsnI	GGCC	4 cut(s)	36, 236, 275, 377
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	365, 457
Bsp143I	GATC	1 cut(s)	397
BspANI	GGCC	4 cut(s)	36, 236, 275, 377
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	2 cut(s)	146, 226
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	445, 469
BssECI	CCNNGG	5 cut(s)	10, 159, 270, 458, 476
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	159, 476
Bst2UI	CCWGG	4 cut(s)	188, 272, 392, 459
Bst4CI	ACNGT	2 cut(s)	14, 174
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	378, 400
BstFNI	CGCG	2 cut(s)	146, 226
BstHHI	GCGC	3 cut(s)	148, 208, 226
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	4 cut(s)	13, 134, 257, 407
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 119, 152, 212, 221, 242, 341, 350
BstNI	CCWGG	4 cut(s)	188, 272, 392, 459
BstSCI	CCNGG	5 cut(s)	186, 270, 275, 390, 457
BstSFI	CTRYAG	2 cut(s)	28, 447
BstUI	CGCG	2 cut(s)	146, 226
BstV1I	GCAGC	1 cut(s)	167
BstV2I	GAAGAC	2 cut(s)	260, 293
BsuRI	GGCC	4 cut(s)	36, 236, 275, 377
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	378, 400
CfoI	GCGC	3 cut(s)	148, 208, 226
Cfr13I	GGNCC	1 cut(s)	235
CsiI	ACCWGGT	1 cut(s)	186
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	8 cut(s)	27, 36, 158, 236, 275, 347, 377, 455
CviKI_1	RGCY	8 cut(s)	27, 36, 158, 236, 275, 347, 377, 455
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	375
EciI	GGCGGA	4 cut(s)	121, 128, 244, 263
Eco130I	CCWWGG	2 cut(s)	159, 476
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	287
EcoRII	CCWGG	4 cut(s)	186, 270, 390, 457
EcoT14I	CCWWGG	2 cut(s)	159, 476
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	2 cut(s)	159, 476
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	89, 408
FaqI	GGGAC	3 cut(s)	92, 457, 475
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	5 cut(s)	156, 204, 227, 246, 345
FokI	GGATG	2 cut(s)	385, 407
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	5 cut(s)	156, 204, 227, 246, 345
FspBI	CTAG	2 cut(s)	429, 493
GlaI	GCGC	3 cut(s)	147, 207, 225
GluI	GCNGC	5 cut(s)	156, 204, 227, 246, 345
HaeIII	GGCC	4 cut(s)	36, 236, 275, 377
HapII	CCGG	2 cut(s)	276, 312
HhaI	GCGC	3 cut(s)	148, 208, 226
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	3 cut(s)	146, 206, 224
HinP1I	GCGC	3 cut(s)	146, 206, 224
HinfI	GANTC	2 cut(s)	5, 298
HpaII	CCGG	2 cut(s)	276, 312
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	4 cut(s)	103, 187, 226, 274
HpyCH4III	ACNGT	2 cut(s)	14, 174
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 119, 152, 212, 221, 242, 341, 350
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	3 cut(s)	146, 206, 224
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	360, 460
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	340
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	2 cut(s)	429, 493
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	399
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	1 cut(s)	397
MboII	GAAGA	5 cut(s)	136, 265, 293, 298, 337
MhlI	GDGCHC	2 cut(s)	365, 457
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	9 cut(s)	26, 91, 109, 112, 205, 211, 214, 235, 351
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	2 cut(s)	276, 312
MspR9I	CCNGG	5 cut(s)	188, 272, 277, 392, 459
MvaI	CCWGG	4 cut(s)	188, 272, 392, 459
MvnI	CGCG	2 cut(s)	146, 226
MwoI	GCNNNNNNNGC	8 cut(s)	33, 119, 152, 212, 221, 242, 341, 350
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	5 cut(s)	157, 205, 228, 247, 346
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	330
Psp6I	CCWGG	4 cut(s)	186, 270, 390, 457
PspGI	CCWGG	4 cut(s)	186, 270, 390, 457
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
SatI	GCNGC	5 cut(s)	156, 204, 227, 246, 345
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	5 cut(s)	188, 272, 277, 392, 459
SduI	GDGCHC	2 cut(s)	365, 457
SetI	ASST	6 cut(s)	29, 68, 137, 192, 333, 343
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	28, 447
Sse9I	AATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	429, 493
StyD4I	CCNGG	5 cut(s)	186, 270, 275, 390, 457
StyI	CCWWGG	2 cut(s)	159, 476
TaaI	ACNGT	2 cut(s)	14, 174
TaiI	ACGT	1 cut(s)	333
TasI	AATT	1 cut(s)	469
TauI	GCSGC	4 cut(s)	206, 229, 248, 347
TfiI	GAWTC	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	2 cut(s)	197, 338
XspI	CTAG	2 cut(s)	429, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.