Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

891064 .. 892075

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G012600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCATCTCATAGGCAGAGCTACAGGGCTGGTGAAGCCAAGGGCCAAACTCAGGAAAAGACAAGCCAGATGATGGGCTCACTAGACGAGAAAGCCCAGGCAGTGAAGGACAAGACCTACGAGACGGCCCAGGCAGCCAAAGAGAGAACAAGGGGTGCAGCGCAATCAACCAAAGACAAGATCCAAGGGAAGGAAGAAGTTGCCAAGGATAAAGCAGATGTTGCAAAGGGTAAGGTCTGGCAGAGCAAGGAGGTGACCAAGCAGAAGGCCTCGGAAGAGGCCGGAAAAGCCCAAGATACGGCGGAGGCCGGGAAGGACAAGTCTGGGGGGTTCCTCCAGCAGACTGGAGAGAGTGTGAAGAACATGGCACAGAGTGCTGCTGATGCTGTCAAAAGTACCTTTGGCATGGCCAAGGATGAAGATGAAGACACTCCTTATTATAGGAAGGACAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0031647 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050821 GO:0050826 GO:0050896 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

8.6

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	408
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	4 cut(s)	52, 73, 190, 298
AjnI	CCWGG	2 cut(s)	96, 129
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	6 cut(s)	43, 126, 267, 279, 306, 408
ApeKI	GCWGC	3 cut(s)	134, 158, 377
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	43, 127
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	44, 265
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	146, 170, 364
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	2 cut(s)	141, 315
BciT130I	CCWGG	2 cut(s)	98, 131
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	83, 457
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	135, 159, 378
BlsI	GCNGC	3 cut(s)	136, 160, 379
Bme1390I	CCNGG	3 cut(s)	98, 131, 310
BmgT120I	GGNCC	2 cut(s)	43, 127
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	3 cut(s)	98, 131, 310
BmsI	GCATC	2 cut(s)	14, 373
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	320, 366
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	7 cut(s)	39, 96, 129, 184, 204, 270, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 73, 190, 298
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	98, 131
BseDI	CCNNGG	7 cut(s)	39, 96, 129, 184, 204, 270, 411
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	4 cut(s)	52, 73, 190, 298
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	146, 170, 364
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	6 cut(s)	45, 128, 269, 281, 308, 410
BsiSI	CCGG	2 cut(s)	282, 309
BslI	CCNNNNNNNGG	4 cut(s)	52, 73, 190, 298
BsmAI	GTCTC	1 cut(s)	116
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	6 cut(s)	45, 128, 269, 281, 308, 410
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	6 cut(s)	45, 128, 269, 281, 308, 410
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	7 cut(s)	39, 96, 129, 184, 204, 270, 411
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	4 cut(s)	39, 184, 204, 411
Bst2UI	CCWGG	2 cut(s)	98, 131
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	2 cut(s)	221, 374
BstDEI	CTNAG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 134, 221, 287, 374, 383
BstNI	CCWGG	2 cut(s)	98, 131
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	3 cut(s)	96, 129, 308
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	146, 170, 364
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	6 cut(s)	45, 128, 269, 281, 308, 410
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	43, 127
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	2 cut(s)	364, 406
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
DraIII	CACNNNGTG	1 cut(s)	374
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	4 cut(s)	39, 184, 204, 411
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	96, 129
EcoT14I	CCWWGG	4 cut(s)	39, 184, 204, 411
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	4 cut(s)	39, 184, 204, 411
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	2 cut(s)	367, 409
FaiI	YATR	4 cut(s)	12, 365, 407, 441
FatI	CATG	2 cut(s)	363, 405
Fnu4HI	GCNGC	3 cut(s)	135, 159, 378
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	135, 159, 378
FspBI	CTAG	2 cut(s)	83, 457
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	135, 159, 378
GsuI	CTGGAG	2 cut(s)	320, 366
HaeIII	GGCC	6 cut(s)	45, 128, 269, 281, 308, 410
HapII	CCGG	2 cut(s)	282, 309
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	367, 409
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	282, 309
HphI	GGTGA	2 cut(s)	44, 265
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	100, 184, 259, 307, 439
HpyCH4V	TGCA	2 cut(s)	158, 224
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 134, 221, 287, 374, 383
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	367, 409
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	180
Lsp1109I	GCAGC	3 cut(s)	146, 170, 364
LweI	GCATC	2 cut(s)	14, 373
MaeI	CTAG	2 cut(s)	83, 457
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	206, 287, 370, 431, 437
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	410
MluNI	TGGCCA	1 cut(s)	410
MnlI	CCTC	5 cut(s)	244, 271, 280, 298, 344
Mox20I	TGGCCA	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	2 cut(s)	282, 309
MspR9I	CCNGG	3 cut(s)	98, 131, 310
MvaI	CCWGG	2 cut(s)	98, 131
MwoI	GCNNNNNNNGC	6 cut(s)	35, 134, 221, 287, 374, 383
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	367, 409
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	136, 160, 379
Psp6I	CCWGG	2 cut(s)	96, 129
PspEI	GGTNACC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	96, 129
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	43, 127
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SatI	GCNGC	3 cut(s)	135, 159, 378
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	43, 127
ScrFI	CCNGG	3 cut(s)	98, 131, 310
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	5 cut(s)	23, 119, 237, 255, 401
SfaNI	GCATC	2 cut(s)	14, 373
SfcI	CTRYAG	1 cut(s)	22
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	2 cut(s)	83, 457
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	3 cut(s)	96, 129, 308
StyI	CCWWGG	4 cut(s)	39, 184, 204, 411
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	3 cut(s)	134, 158, 377
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	432, 438
TspRI	CASTG	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	83, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.