Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

54001620 .. 54002275

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50747

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACCCAAGAGGCAAGGCGGAAGGCGGAGGAGGCGGAGGAGGCGAAGAACAAGACCTACGAGACCGCGCAACAAGCCAAGGAGAAAACACAGTCCACAATGAACCAGGTGAAGGACAAGGCGGAACAGGAGGCAGAGGAGGCAAGGCGGAACGCCCAAGAGGCGGCGGAAAAGACTAAAGAGACTGCCCAGGCCGGGAAGGAGAAGACGAGCGGGATTCTTCAGCAGACCGGAGAAACAATGAAGAACGTTGCACAAGGTGCGGCTGATGCTGTGAGGAGCACTATTGGGATGGCCAAGAACGATGACCAGGATGATCCTTATTATAGGGAGACTAATACCACTACTAGGACTAATACTGGGACTACAGGGGCACCTGGGACTGGGAATTACCCAAGGAATAGGAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

5.7

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	68
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	206
AdeI	CACNNNGTG	1 cut(s)	260
AfiI	CCNNNNNNNGG	5 cut(s)	112, 163, 195, 348, 383
AjnI	CCWGG	4 cut(s)	105, 189, 309, 376
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	3 cut(s)	56, 176, 326
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	192, 294
AspLEI	GCGC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	1 cut(s)	286
BciT130I	CCWGG	4 cut(s)	107, 191, 311, 378
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	56, 176, 326
BfaI	CTAG	2 cut(s)	348, 412
BfmI	CTRYAG	1 cut(s)	366
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	165, 264
BlsI	GCNGC	2 cut(s)	166, 265
Bme1390I	CCNGG	5 cut(s)	107, 191, 196, 311, 378
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	5 cut(s)	107, 191, 196, 311, 378
BmrI	ACTGGG	2 cut(s)	369, 393
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	2 cut(s)	369, 393
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	78, 189, 377, 395
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 163, 195, 348, 383
Bse1I	ACTGG	2 cut(s)	364, 388
BseBI	CCWGG	4 cut(s)	107, 191, 311, 378
BseDI	CCNNGG	4 cut(s)	78, 189, 377, 395
BseGI	GGATG	2 cut(s)	297, 319
BseLI	CCNNNNNNNGG	5 cut(s)	112, 163, 195, 348, 383
BseNI	ACTGG	2 cut(s)	364, 388
BseRI	GAGGAG	4 cut(s)	44, 53, 152, 292
BseSI	GKGCMC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	194, 296
BshNI	GGYRCC	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	195, 231
BslFI	GGGAC	2 cut(s)	376, 394
BslI	CCNNNNNNNGG	5 cut(s)	112, 163, 195, 348, 383
BsmAI	GTCTC	3 cut(s)	56, 176, 326
BsmFI	GGGAC	2 cut(s)	376, 394
BsnI	GGCC	2 cut(s)	194, 296
Bso31I	GGTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	284, 376
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	2 cut(s)	194, 296
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	364, 388
BssECI	CCNNGG	4 cut(s)	78, 189, 377, 395
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	78, 395
Bst2UI	CCWGG	4 cut(s)	107, 191, 311, 378
Bst4CI	ACNGT	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	297, 319
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	3 cut(s)	56, 176, 326
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 74, 140, 161, 260, 269
BstNI	CCWGG	4 cut(s)	107, 191, 311, 378
BstSCI	CCNGG	5 cut(s)	105, 189, 194, 309, 376
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	194, 296
BtsCI	GGATG	2 cut(s)	297, 319
CfoI	GCGC	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	105
CviJI	RGCY	4 cut(s)	77, 194, 266, 296
CviKI_1	RGCY	4 cut(s)	77, 194, 266, 296
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	294
EciI	GGCGGA	6 cut(s)	34, 41, 50, 137, 163, 182
Eco130I	CCWWGG	2 cut(s)	78, 395
Eco31I	GGTCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	4 cut(s)	105, 189, 309, 376
EcoT14I	CCWWGG	2 cut(s)	78, 395
ErhI	CCWWGG	2 cut(s)	78, 395
FaiI	YATR	1 cut(s)	327
FaqI	GGGAC	2 cut(s)	376, 394
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	165, 264
FokI	GGATG	2 cut(s)	304, 326
Fsp4HI	GCNGC	2 cut(s)	165, 264
FspBI	CTAG	2 cut(s)	348, 412
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	2 cut(s)	165, 264
HaeIII	GGCC	2 cut(s)	194, 296
HapII	CCGG	2 cut(s)	195, 231
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	195, 231
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	3 cut(s)	16, 106, 193
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 74, 140, 161, 260, 269
HpySE526I	ACGT	1 cut(s)	249
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	279
LweI	GCATC	1 cut(s)	259
MabI	ACCWGGT	1 cut(s)	105
MaeI	CTAG	2 cut(s)	348, 412
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	58, 212, 217, 256
MhlI	GDGCHC	2 cut(s)	284, 376
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	2 cut(s)	195, 231
MspR9I	CCNGG	5 cut(s)	107, 191, 196, 311, 378
MvaI	CCWGG	4 cut(s)	107, 191, 311, 378
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 74, 140, 161, 260, 269
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	166, 265
Psp1406I	AACGTT	1 cut(s)	249
Psp6I	CCWGG	4 cut(s)	105, 189, 309, 376
PspGI	CCWGG	4 cut(s)	105, 189, 309, 376
PspN4I	GGNNCC	1 cut(s)	375
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
SatI	GCNGC	2 cut(s)	165, 264
Sau3AI	GATC	1 cut(s)	316
ScrFI	CCNGG	5 cut(s)	107, 191, 196, 311, 378
SduI	GDGCHC	2 cut(s)	284, 376
SetI	ASST	5 cut(s)	59, 111, 252, 262, 379
SexAI	ACCWGGT	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	388
SspMI	CTAG	2 cut(s)	348, 412
StyD4I	CCNGG	5 cut(s)	105, 189, 194, 309, 376
StyI	CCWWGG	2 cut(s)	78, 395
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	252
TasI	AATT	1 cut(s)	388
TauI	GCSGC	2 cut(s)	167, 266
TfiI	GAWTC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	116, 257
XspI	CTAG	2 cut(s)	348, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.