Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004017

Physical Location & Seq

Genomic Coordinates Forward (+)

41193941 .. 41195353

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0332400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGATTGTTGCTTTCGTCGGTGGTTACAACTTTGAAAGCAAGTTGTTTGACATCGCCGGATTTGGCAAGGATTTGGGTCTCTCTGCTTTCTCTTCCACGTCGCCGGATTCATTTCCGAGATGCAAGAGATCGGTCTCCAAGAAAATCTGCTCCGTCATATCGCCACAGCAATCGGAGCGGAAGCCAGCCACTACTGGCTCGGTCAAGACGGGGATGACAATGACGGAGAAGATATTGGTTAGGGCTTCTGAGAAACCCCAATTGAGCCCAGGTGACAATGTTTGGGTTAACATTGATGTTTTGATGACCCATGACGTGTGTGGCCCTGGTTCATTTGGAATCTTCAAAAAAGAGTTTGGACAGAATGCAAAGGTTTGGGACAGAGAAAAGATTGTAATCATACCTGACCATTATATATTTACAACTGATGAGCGTGCAAACCATAATGTGGATATCTTGAGGGATTTTTGCACGGAGCAGAACATCAAGTACTTCTATGATATCAAGGATCTTGGTAACTTTAAGGCTAACCCAGATTACAAGGGTGTATGCCATGTTGCTCTTGCTCAAGAAGGTCATTGCAGGCCTGGAGAGGAACTTAAAATTGGGAAAGTCTGCGTATTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_4

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

8.41

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15415
fragaria_vesca	FvH4_3g44490 FvH4_6g30371
malus_domestica	MD03G1011800.v1.1 MD17G1204200.v1.1
prunus_persica	Prupe.3G079700_v2.0.a1 Prupe.6G012600_v2.0.a1
pyrus_communis	pycom03g01060 pycom17g20790
rosa_chinensis	RchiOBHm_Chr2g0136691 RchiOBHm_Chr5g0081191
rosa_laevigata	RLG00000019561 RLG00000030442 RLG00000036916
rosa_multiflora	Rmu_sc0001299.1_g000029 Rmu_sc0006440.1_g000009 Rmu_sc0006545.1_g000002 Rmu_ssc0000432.1_g000073 Rmu_ssc0000432.1_g000075
rosa_roxburghii	Rroxscaffold_1G00002280 Rroxscaffold_2G00108150
rosa_rugosa	Rorug02G0332400 Rorug05G0474300
rosa_samantha	Rh2AG383300 Rh2BG390000 Rh2CG369800 Rh2DG406600 Rh5AG526400 Rh5BG550700 Rh5CG573600 Rh5DG560500
rosa_wichuraiana	Rw2G031330 Rw5G048920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	519
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	38, 349, 628
AjiI	CACGTC	2 cut(s)	102, 319
AjnI	CCWGG	3 cut(s)	271, 328, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
Alw26I	GTCTC	2 cut(s)	86, 142
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	2 cut(s)	325, 587
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	16, 287
BanII	GRGCYC	1 cut(s)	272
BciT130I	CCWGG	3 cut(s)	273, 330, 591
BcoDI	GTCTC	2 cut(s)	86, 142
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	273, 330, 591
BmgBI	CACGTC	2 cut(s)	102, 319
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	3 cut(s)	273, 330, 591
BmsI	GCATC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	481, 555
BsaBI	GATNNNNATC	1 cut(s)	398
BsaI	GGTCTC	2 cut(s)	86, 142
BsaJI	CCNNGG	2 cut(s)	271, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	398
BseBI	CCWGG	3 cut(s)	273, 330, 591
BseDI	CCNNGG	2 cut(s)	271, 328
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	398
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	327, 589
BsiSI	CCGG	2 cut(s)	60, 107
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	86, 142
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	327, 589
Bso31I	GGTCTC	2 cut(s)	86, 142
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	131, 511
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	327, 589
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	519
BspTNI	GGTCTC	2 cut(s)	86, 142
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	271, 328
BssMI	GATC	2 cut(s)	131, 511
Bst2UI	CCWGG	3 cut(s)	273, 330, 591
Bst6I	CTCTTC	1 cut(s)	100
BstC8I	GCNNGC	3 cut(s)	189, 438, 587
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	134, 514
BstMAI	GTCTC	2 cut(s)	86, 142
BstMBI	GATC	2 cut(s)	131, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	3 cut(s)	273, 330, 591
BstSCI	CCNGG	3 cut(s)	271, 328, 589
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	2 cut(s)	327, 589
BtgZI	GCGATG	1 cut(s)	40
BtrI	CACGTC	2 cut(s)	102, 319
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	189, 438, 587
Cfr13I	GGNCC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	314, 557
CviJI	RGCY	8 cut(s)	187, 191, 201, 248, 270, 327, 530, 589
CviKI_1	RGCY	8 cut(s)	187, 191, 201, 248, 270, 327, 530, 589
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	133, 513
DpnII	GATC	2 cut(s)	131, 511
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	2 cut(s)	86, 142
Eco32I	GATATC	2 cut(s)	457, 505
EcoRII	CCWGG	3 cut(s)	271, 328, 589
EcoRV	GATATC	2 cut(s)	457, 505
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	2 cut(s)	317, 560
FaiI	YATR	9 cut(s)	161, 315, 404, 417, 419, 447, 501, 553, 558
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	313, 556
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	327, 589
HapII	CCGG	2 cut(s)	60, 107
Hin1II	CATG	2 cut(s)	317, 560
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	110, 342
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	60, 107
HphI	GGTGA	2 cut(s)	16, 287
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	120, 178, 253
Hpy188III	TCNNGA	3 cut(s)	208, 460, 572
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	2 cut(s)	23, 106
HpyAV	CCTTC	1 cut(s)	569
HpyCH4IV	ACGT	2 cut(s)	101, 318
HpyCH4V	TGCA	5 cut(s)	126, 371, 440, 474, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	101, 318
Hsp92II	CATG	2 cut(s)	317, 560
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	131, 511
LmnI	GCTCC	3 cut(s)	158, 178, 478
LweI	GCATC	1 cut(s)	113
MaeII	ACGT	2 cut(s)	101, 318
MaeIII	GTNAC	3 cut(s)	26, 275, 518
MalI	GATC	2 cut(s)	133, 513
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	2 cut(s)	131, 511
MboII	GAAGA	3 cut(s)	87, 244, 337
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	263, 606
MnlI	CCTC	2 cut(s)	456, 589
MseI	TTAA	3 cut(s)	291, 525, 603
MspI	CCGG	2 cut(s)	60, 107
MspR9I	CCNGG	3 cut(s)	273, 330, 591
MunI	CAATTG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	3 cut(s)	273, 330, 591
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	2 cut(s)	131, 511
NlaIII	CATG	2 cut(s)	317, 560
NmuCI	GTSAC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	589
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	110, 342
PflMI	CCANNNNNTGG	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	271, 328, 589
PspGI	CCWGG	3 cut(s)	271, 328, 589
PspPI	GGNCC	1 cut(s)	326
PsrI	GAACNNNNNNTAC	2 cut(s)	476, 508
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	3 cut(s)	291, 525, 603
Sau3AI	GATC	2 cut(s)	131, 511
Sau96I	GGNCC	1 cut(s)	326
ScaI	AGTACT	1 cut(s)	494
ScrFI	CCNGG	3 cut(s)	273, 330, 591
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	104, 277, 321, 378, 409, 580
SfaNI	GCATC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	460, 570
SmoI	CTYRAG	2 cut(s)	460, 570
Sse9I	AATT	2 cut(s)	263, 606
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	3 cut(s)	271, 328, 589
TaiI	ACGT	2 cut(s)	104, 321
TaqII	GACCGA	2 cut(s)	124, 193
TasI	AATT	2 cut(s)	263, 606
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	110, 342
Tru1I	TTAA	3 cut(s)	291, 525, 603
Tru9I	TTAA	3 cut(s)	291, 525, 603
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	102, 324
TspGWI	ACGGA	3 cut(s)	145, 242, 491
Van91I	CCANNNNNTGG	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.