AT1G15950

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002169
Physical Location & Seq
Forward (+)
5478603 .. 5482180
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15950.2

Sequence Viewer

Length: 1035 bp
ATGCCAGTCGACGTAGCCTCACCGGCCGGAAAAACCGTCTGCGTCACCGGAGCTGGTGGATACATCGCTTCTTGGATTGTTAAGATACTTCTCGAGAGAGGTTACACAGTCAAAGGAACCGTACGGAATCCAGATGATCCGAAGAACACACATTTGAGAGAACTAGAAGGAGGAAAGGAGAGACTGATTCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTTAAGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATCCGGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCTGCGGCTGAGGCCAAGGTCAAGCGCGTGGTCATCACCTCCTCCATTGGTGCCGTCTACATGGACCCGAACCGTGACCCTGAGGCTGTCGTTGACGAAAGTTGTTGGAGTGATCTTGACTTCTGCAAAAACACCAAGAATTGGTATTGTTACGGCAAGATGGTGGCGGAACAAGCGGCGTGGGAGACAGCAAAGGAGAAAGGTGTTGACTTGGTGGTGTTGAATCCGGTGCTGGTTCTTGGACCGCCGTTACAGCCGACGATCAACGCCAGTCTTTACCACGTCCTCAAATATCTAACCGGCTCGGCTAAGACTTATGCTAATTTGACTCAAGCTTATGTGGATGTTCGCGATGTCGCGCTGGCTCATGTTCTGGTCTATGAGGCACCCTCGGCCTCCGGACGTTATCTCCTAGCCGAGAGTGCTCGCCACCGCGGGGAAGTTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCAAGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTAAGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCTTACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCTCCTCCTTCAGCATCGCAAGAATCCGTGGAAAATGGCATTAAGATCGGGTCTTGA

Protein Analysis

344

Amino Acids

37.49

Weight (kDa)

6.13

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 11 - 128 4.6e-13 NmrA-like family
Epimerase PF01370 13 - 245 5.2e-25 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 13 - 131 6.6e-07 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 15 - 238 2.5e-17 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 15 - 137 1.8e-10 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 15 - 204 3.4e-09 Male sterility protein
NAD_binding_10 PF13460 17 - 136 3.5e-17 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 386, 721
AccB7I CCANNNNNTGG 1 cut(s) 477
AccI GTMKAC 2 cut(s) 9, 393
AccII CGCG 4 cut(s) 363, 687, 695, 771
AccIII TCCGGA 2 cut(s) 286, 734
AciI CCGC 7 cut(s) 230, 341, 503, 512, 581, 769, 771
AclWI GGATC 2 cut(s) 131, 278
AcoI YGGCCR 2 cut(s) 24, 306
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 191, 972
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 477, 772
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 559
AjiI CACGTC 1 cut(s) 619
AluBI AGCT 4 cut(s) 53, 671, 799, 945
AluI AGCT 4 cut(s) 53, 671, 799, 945
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 2 cut(s) 175, 515
AlwI GGATC 2 cut(s) 131, 278
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 2 cut(s) 286, 734
AoxI GGCC 5 cut(s) 24, 306, 348, 729, 958
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 866
AseI ATTAAT 1 cut(s) 333
AspLEI GCGC 2 cut(s) 363, 697
AspS9I GGNCC 2 cut(s) 400, 578
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 4 cut(s) 12, 37, 268, 364
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 2 cut(s) 400, 578
AxyI CCTNAGG 1 cut(s) 417
BanI GGYRCC 2 cut(s) 386, 721
Bbv12I GWGCWC 1 cut(s) 763
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 233, 490, 969
BceAI ACGGC 6 cut(s) 265, 279, 293, 374, 505, 568
BcgI CGANNNNNNTGC 1 cut(s) 1006
BciVI GTATCC 2 cut(s) 53, 822
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 2 cut(s) 175, 515
BfaI CTAG 3 cut(s) 164, 749, 849
BfrI CTTAAG 1 cut(s) 224
BfuI GTATCC 2 cut(s) 53, 822
BglI GCCNNNNNGGC 1 cut(s) 23
BglII AGATCT 1 cut(s) 202
BisI GCNGC 4 cut(s) 231, 339, 342, 513
BlpI GCTNAGC 1 cut(s) 795
BlsI GCNGC 4 cut(s) 232, 340, 343, 514
Bme1390I CCNGG 1 cut(s) 806
Bme18I GGWCC 2 cut(s) 400, 578
BmeT110I CYCGRG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 400, 578
BmiI GGNNCC 6 cut(s) 118, 303, 319, 388, 402, 723
BmrFI CCNGG 1 cut(s) 806
BmsI GCATC 1 cut(s) 1001
BplI GAGNNNNNCTC 2 cut(s) 710, 742
Bpu10I CCTNAGC 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 651
BpuMI CCSGG 1 cut(s) 806
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 351, 726, 769, 1005
BsaWI WCCGGW 4 cut(s) 47, 286, 562, 734
BsaXI ACNNNNNCTCC 4 cut(s) 253, 283, 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 772
Bse118I RCCGGY 3 cut(s) 22, 304, 635
Bse1I ACTGG 2 cut(s) 5, 606
Bse21I CCTNAGG 1 cut(s) 417
BseAI TCCGGA 2 cut(s) 286, 734
BseDI CCNNGG 4 cut(s) 351, 726, 769, 1005
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 2 cut(s) 477, 772
BseMII CTCAG 2 cut(s) 336, 408
BseNI ACTGG 2 cut(s) 5, 606
BseRI GAGGAG 6 cut(s) 367, 960, 963, 966, 969, 972
BseX3I CGGCCG 2 cut(s) 24, 306
BseXI GCAGC 1 cut(s) 325
Bsh1236I CGCG 4 cut(s) 363, 687, 695, 771
Bsh1285I CGRYCG 2 cut(s) 27, 309
BshFI GGCC 5 cut(s) 26, 308, 350, 731, 960
BshNI GGYRCC 2 cut(s) 386, 721
BsiEI CGRYCG 2 cut(s) 27, 309
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 9 cut(s) 23, 27, 48, 287, 305, 563, 636, 735, 806
BsiWI CGTACG 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 477, 772
BsmAI GTCTC 2 cut(s) 175, 515
BsnI GGCC 5 cut(s) 26, 308, 350, 731, 960
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 763
Bsp13I TCCGGA 2 cut(s) 286, 734
Bsp143I GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
Bsp1720I GCTNAGC 1 cut(s) 795
Bsp68I TCGCGA 1 cut(s) 687
BspACI CCGC 7 cut(s) 230, 341, 503, 512, 581, 769, 771
BspANI GGCC 5 cut(s) 26, 308, 350, 731, 960
BspCNI CTCAG 2 cut(s) 337, 409
BspEI TCCGGA 2 cut(s) 286, 734
BspFNI CGCG 4 cut(s) 363, 687, 695, 771
BspLI GGNNCC 6 cut(s) 118, 303, 319, 388, 402, 723
BspPI GGATC 2 cut(s) 131, 278
BspT107I GGYRCC 2 cut(s) 386, 721
BspTI CTTAAG 1 cut(s) 224
BsrFI RCCGGY 3 cut(s) 22, 304, 635
BsrI ACTGG 2 cut(s) 5, 606
BssAI RCCGGY 3 cut(s) 22, 304, 635
BssECI CCNNGG 4 cut(s) 351, 726, 769, 1005
BssMI GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 5 cut(s) 37, 109, 121, 410, 937
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 306, 699, 763
BstDEI CTNAG 6 cut(s) 345, 417, 645, 795, 892, 898
BstDSI CCRYGG 2 cut(s) 769, 1005
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 4 cut(s) 363, 687, 695, 771
BstHHI GCGC 2 cut(s) 363, 697
BstKTI GATC 6 cut(s) 139, 205, 286, 451, 600, 1026
BstMAI GTCTC 2 cut(s) 175, 515
BstMBI GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
BstMCI CGRYCG 2 cut(s) 27, 309
BstMWI GCNNNNNNNGC 7 cut(s) 23, 227, 347, 509, 589, 728, 758
BstSCI CCNGG 1 cut(s) 804
BstUI CGCG 4 cut(s) 363, 687, 695, 771
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BstZI CGGCCG 2 cut(s) 24, 306
Bsu36I CCTNAGG 1 cut(s) 417
BsuI GTATCC 2 cut(s) 53, 822
BsuRI GGCC 5 cut(s) 26, 308, 350, 731, 960
BtgI CCRYGG 2 cut(s) 769, 1005
BtgZI GCGATG 3 cut(s) 49, 702, 978
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 685
BtuMI TCGCGA 1 cut(s) 687
Cac8I GCNNGC 3 cut(s) 306, 699, 763
CfoI GCGC 2 cut(s) 363, 697
Cfr10I RCCGGY 3 cut(s) 22, 304, 635
Cfr13I GGNCC 2 cut(s) 400, 578
Cfr42I CCGCGG 1 cut(s) 772
CseI GACGC 2 cut(s) 31, 241
Csp6I GTAC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 497, 532
CviAII CATG 2 cut(s) 397, 704
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 6 cut(s) 345, 417, 645, 795, 892, 898
DpnI GATC 6 cut(s) 138, 204, 285, 450, 599, 1025
DpnII GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
EaeI YGGCCR 2 cut(s) 24, 306
EagI CGGCCG 2 cut(s) 24, 306
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
EciI GGCGGA 1 cut(s) 518
EclXI CGGCCG 2 cut(s) 24, 306
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 400, 578
Eco52I CGGCCG 2 cut(s) 24, 306
Eco57I CTGAAG 2 cut(s) 191, 972
Eco81I CCTNAGG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 400, 707
FaiI YATR 6 cut(s) 398, 654, 675, 705, 717, 862
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 948, 980
FatI CATG 2 cut(s) 396, 703
FauI CCCGC 1 cut(s) 764
FblI GTMKAC 2 cut(s) 9, 393
Fnu4HI GCNGC 4 cut(s) 231, 339, 342, 513
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 4 cut(s) 231, 339, 342, 513
FspBI CTAG 3 cut(s) 164, 749, 849
GlaI GCGC 2 cut(s) 362, 696
GluI GCNGC 4 cut(s) 231, 339, 342, 513
HaeIII GGCC 5 cut(s) 26, 308, 350, 731, 960
HapII CCGG 9 cut(s) 23, 27, 48, 287, 305, 563, 636, 735, 806
HgaI GACGC 2 cut(s) 31, 241
HhaI GCGC 2 cut(s) 363, 697
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 400, 707
Hin6I GCGC 2 cut(s) 361, 695
HinP1I GCGC 2 cut(s) 361, 695
HincII GTYRAC 3 cut(s) 10, 430, 544
HindII GTYRAC 3 cut(s) 10, 430, 544
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 6 cut(s) 127, 187, 559, 664, 787, 1001
HpaII CCGG 9 cut(s) 23, 27, 48, 287, 305, 563, 636, 735, 806
HphI GGTGA 4 cut(s) 12, 37, 268, 364
Hpy166II GTNNAC 5 cut(s) 10, 394, 430, 544, 906
Hpy188I TCNGA 2 cut(s) 141, 822
Hpy8I GTNNAC 5 cut(s) 10, 394, 430, 544, 906
Hpy99I CGWCG 4 cut(s) 14, 251, 284, 598
HpyAV CCTTC 2 cut(s) 161, 996
HpyCH4III ACNGT 5 cut(s) 37, 109, 121, 410, 937
HpyCH4IV ACGT 3 cut(s) 12, 618, 739
HpyCH4V TGCA 3 cut(s) 195, 462, 831
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 227, 347, 509, 589, 728, 758
HpyF3I CTNAG 6 cut(s) 345, 417, 645, 795, 892, 898
HpySE526I ACGT 3 cut(s) 12, 618, 739
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 400, 707
HspAI GCGC 2 cut(s) 361, 695
Kpn2I TCCGGA 2 cut(s) 286, 734
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
KspI CCGCGG 1 cut(s) 772
Kzo9I GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
LmnI GCTCC 4 cut(s) 50, 301, 317, 973
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 1001
MaeI CTAG 3 cut(s) 164, 749, 849
MaeII ACGT 3 cut(s) 12, 618, 739
MaeIII GTNAC 6 cut(s) 43, 101, 274, 410, 485, 585
MalI GATC 6 cut(s) 138, 204, 285, 450, 599, 1025
MboI GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
MboII GAAGA 5 cut(s) 154, 197, 809, 853, 892
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 4 cut(s) 330, 475, 658, 866
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 2 cut(s) 422, 845
MroI TCCGGA 2 cut(s) 286, 734
MroNI GCCGGC 1 cut(s) 304
MseI TTAA 5 cut(s) 81, 225, 333, 885, 1020
MspA1I CMGCKG 1 cut(s) 771
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 9 cut(s) 23, 27, 48, 287, 305, 563, 636, 735, 806
MspR9I CCNGG 1 cut(s) 806
MvnI CGCG 4 cut(s) 363, 687, 695, 771
MwoI GCNNNNNNNGC 7 cut(s) 23, 227, 347, 509, 589, 728, 758
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 806
NdeII GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 400, 707
NlaIV GGNNCC 6 cut(s) 118, 303, 319, 388, 402, 723
NmeAIII GCCGAG 3 cut(s) 620, 707, 778
NmuCI GTSAC 3 cut(s) 43, 274, 410
NruI TCGCGA 1 cut(s) 687
PaeR7I CTCGAG 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 306
PfeI GAWTC 5 cut(s) 127, 187, 559, 787, 1001
Pfl23II CGTACG 1 cut(s) 121
PflFI GACNNNGTC 2 cut(s) 251, 935
PflMI CCANNNNNTGG 1 cut(s) 477
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 4 cut(s) 232, 340, 343, 514
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PshBI ATTAAT 1 cut(s) 333
PspLI CGTACG 1 cut(s) 121
PspN4I GGNNCC 6 cut(s) 118, 303, 319, 388, 402, 723
PspPI GGNCC 2 cut(s) 400, 578
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 2 cut(s) 251, 935
RruI TCGCGA 1 cut(s) 687
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SacII CCGCGG 1 cut(s) 772
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 81, 225, 333, 885, 1020
SatI GCNGC 4 cut(s) 231, 339, 342, 513
Sau3AI GATC 6 cut(s) 136, 202, 283, 448, 597, 1023
Sau96I GGNCC 2 cut(s) 400, 578
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 1 cut(s) 806
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 1 cut(s) 1001
Sfr274I CTCGAG 1 cut(s) 92
Sfr303I CCGCGG 1 cut(s) 772
SgrBI CCGCGG 1 cut(s) 772
SinI GGWCC 2 cut(s) 400, 578
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 92, 224, 666
SmoI CTYRAG 3 cut(s) 92, 224, 666
Sse9I AATT 4 cut(s) 330, 475, 658, 866
SsiI CCGC 7 cut(s) 230, 341, 503, 512, 581, 769, 771
SspMI CTAG 3 cut(s) 164, 749, 849
StyD4I CCNGG 1 cut(s) 804
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 5 cut(s) 37, 109, 121, 410, 937
TaiI ACGT 3 cut(s) 15, 621, 742
TaqI TCGA 2 cut(s) 9, 93
TasI AATT 4 cut(s) 330, 475, 658, 866
TauI GCSGC 3 cut(s) 233, 344, 515
TfiI GAWTC 5 cut(s) 127, 187, 559, 787, 1001
Tru1I TTAA 5 cut(s) 81, 225, 333, 885, 1020
Tru9I TTAA 5 cut(s) 81, 225, 333, 885, 1020
TseFI GTSAC 3 cut(s) 43, 274, 410
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 3 cut(s) 43, 274, 410
TspGWI ACGGA 2 cut(s) 139, 994
Tth111I GACNNNGTC 2 cut(s) 251, 935
Van91I CCANNNNNTGG 1 cut(s) 477
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 400, 578
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 866
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 2 cut(s) 9, 393
XspI CTAG 3 cut(s) 164, 749, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.