Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

33698662 .. 33717102

Gene Structure 18441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG163700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCGACTTATGTATAAACTGGTACTGCTATGGGAAAACTGTGGCGGAGCAAGCAGCGTGGGATGAAGCCAAAGAGAGAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTTGGTGGTCGGACCACTGCTCCAACCAACCATCAACGCTAGCACTGTCCACATCCTCAAGTACATGACTGGCTCAGCCAAGACTTATGCCAATTCAATTCAGGCCTATGTGCATGTTAAGGATGTGGCATTAGCACACATACTAGTGTATGAAACTCCCTCTGCCTCTGGTCGTTATCTTTGCGGCGAGAGCGTCCTTCACCGTGGAGATGTGGTTGAAATCCTTGCCAAGTTCTTCCCTGAATACCCAATACCCACCAAGTTGAAAGATGATGGGAAACCCAGAGCAAAACCATACAAGTTCTCAAACCAGAAGCTACAAGACTTGGGTTTGGAGTTCACCCCCGTGAAACAGAGTCTATATGACACTGTCAAGAGCTTGCAGGACAAGGGGCACCTTAAAAAGAGAAATCAGGCAACTGAAGAAGGAAACAAGTCAGGGGTCATCTTTATGCAAAATTGCAAATTAAAGTTCGAGCCGAATAATCAAGGGCTTTGGGGTAAGGTGCTGAAGATTTGGAATTATAGGGGTTCAATTCAGACCAGAGTTATATCACCTGAAGTTTTAGTAGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

229

Amino Acids

25.68

Weight (kDa)

9.0

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	504
AciI	CCGC	2 cut(s)	47, 294
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	3 cut(s)	552, 641, 690
AfaI	GTAC	2 cut(s)	26, 173
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	207, 329, 376, 645
AhlI	ACTAGT	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	2 cut(s)	427, 489
AluI	AGCT	2 cut(s)	427, 489
AoxI	GGCC	2 cut(s)	3, 213
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	112, 302, 442, 657
AsuNHI	GCTAGC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	149, 377
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	2 cut(s)	150, 254
BisI	GCNGC	2 cut(s)	57, 295
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	2 cut(s)	58, 296
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	506
BmrI	ACTGGG	1 cut(s)	101
BmtI	GCTAGC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	3 cut(s)	26, 107, 184
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	70, 162, 238
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	26, 107, 184
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	5, 215
BshNI	GGYRCC	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 215
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp1720I	GCTNAGC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	47, 294
BspANI	GGCC	2 cut(s)	5, 215
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	506
BspOI	GCTAGC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	26, 107, 184
BssECI	CCNNGG	1 cut(s)	313
Bst4CI	ACNGT	4 cut(s)	43, 157, 314, 481
BstC8I	GCNNGC	3 cut(s)	54, 151, 491
BstDEI	CTNAG	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	70, 162, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 300
BstNSI	RCATGY	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	5, 215
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	70, 162, 238
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 153, 477
Cac8I	GCNNGC	3 cut(s)	54, 151, 491
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	25, 172
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	2 cut(s)	175, 224
CviJI	RGCY	9 cut(s)	5, 71, 183, 188, 215, 427, 489, 589, 604
CviKI_1	RGCY	9 cut(s)	5, 71, 183, 188, 215, 427, 489, 589, 604
CviQI	GTAC	2 cut(s)	25, 172
DdeI	CTNAG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	552, 641, 690
FaeI	CATG	2 cut(s)	178, 227
FatI	CATG	2 cut(s)	174, 223
Fnu4HI	GCNGC	2 cut(s)	57, 295
FokI	GGATG	3 cut(s)	77, 149, 245
Fsp4HI	GCNGC	2 cut(s)	57, 295
FspBI	CTAG	2 cut(s)	150, 254
GluI	GCNGC	2 cut(s)	57, 295
HaeIII	GGCC	2 cut(s)	5, 215
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	178, 227
HinfI	GANTC	1 cut(s)	466
HphI	GGTGA	4 cut(s)	112, 302, 442, 657
Hpy166II	GTNNAC	4 cut(s)	88, 103, 160, 450
Hpy188I	TCNGA	2 cut(s)	122, 651
Hpy188III	TCNNGA	1 cut(s)	484
Hpy8I	GTNNAC	4 cut(s)	88, 103, 160, 450
HpyAV	CCTTC	2 cut(s)	317, 530
HpyCH4III	ACNGT	4 cut(s)	43, 157, 314, 481
HpyCH4V	TGCA	4 cut(s)	223, 493, 565, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 300
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	178, 227
LmnI	GCTCC	2 cut(s)	49, 135
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	150, 254
MboII	GAAGA	3 cut(s)	337, 545, 634
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	6 cut(s)	202, 207, 568, 575, 631, 645
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	2 cut(s)	100, 157
MnlI	CCTC	4 cut(s)	74, 176, 280, 286
MseI	TTAA	3 cut(s)	228, 510, 578
MslI	CAYNNNNRTG	3 cut(s)	254, 455, 560
MwoI	GCNNNNNNNGC	2 cut(s)	53, 300
NheI	GCTAGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	178, 227
NlaIV	GGNNCC	1 cut(s)	506
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	58, 296
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	2 cut(s)	26, 173
RsaNI	GTAC	2 cut(s)	25, 172
RseI	CAYNNNNRTG	3 cut(s)	254, 455, 560
SaqAI	TTAA	3 cut(s)	228, 510, 578
SatI	GCNGC	2 cut(s)	57, 295
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	5 cut(s)	429, 491, 510, 618, 670
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	3 cut(s)	254, 455, 560
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SpeI	ACTAGT	1 cut(s)	253
Sse9I	AATT	6 cut(s)	202, 207, 568, 575, 631, 645
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	2 cut(s)	47, 294
SspMI	CTAG	2 cut(s)	150, 254
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	4 cut(s)	43, 157, 314, 481
TaqI	TCGA	1 cut(s)	585
TasI	AATT	6 cut(s)	202, 207, 568, 575, 631, 645
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	228, 510, 578
Tru9I	TTAA	3 cut(s)	228, 510, 578
TscAI	CASTG	3 cut(s)	132, 160, 484
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	81, 276
TspRI	CASTG	3 cut(s)	132, 160, 484
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	122
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	2 cut(s)	150, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.