Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

21488828 .. 21493601

Gene Structure 4774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATGACCCAAATAATGTTCATTTGAGAGAGCTGGAAGGAGCCAGAGAGAGGCTGAGCTTGAGAAAAGTCGATCTTCTCGATTTAGAGAGCCTTAAAGATGCCATTGCCGGCTGCGATGGCATTTTCCACACAGCATCCCCTTTAACTGATGATTCGGAAGAAATGGTGTCGCCGGCTGTGAATGGAACAAAGACTGTAATCGTTGCCGCTTCTGAAGCTAAGGTTAAACGCGTGGTCTTCACATCTTCAAACGGTGCCGTCTACATGAACCCCACCACAGGTCCTGATGTGGTTGTCGATGAGTCCTGTTGGAGCGACCTGGAGTTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAACTGTGGCAGAGCTAGCAGCTTGGGATGAAGCCAAAAAGAGAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTATGTGCTTGGACCACTGCTCCAACCCACCATCAACATTAGCACTGTCCACATCCTCAAGTACTTGACTGGCTCAGCCAAGACTTATGCCAATTCAATTCAGGCCTATGTGCATGTTAAGGATGTGGCATTAGCACACATACTAGTGTATGAAACTCCCTCTGCCTCCGGTCGTTATCTTTGCGCCGAGAGCGTCCTTCACCGTGGAGATGTGGTTGAAATCCTTGCCAAGTACTTCCCTGAATACCCAATACCCACCAAGTTGAAAGAAGATGGGAAACCTAGAGCAAAACCATACAAGTTCTCAAACCAGAAGCTTAAAGACTTGGGTTTGGAGTTCACCCCAGTGAAGCAGAGCCTATATGACACTGTCAAGAGCTTACAGGACAAGGGGCACCTTAAAATTAAACCACATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

285

Amino Acids

31.58

Weight (kDa)

6.71

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	9 - 89	2e-09	NAD(P)H-binding
Epimerase	PF01370	15 - 202	8.4e-16	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	21 - 195	7.2e-14	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	29 - 154	9e-08	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 831
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	3 cut(s)	353, 500, 671
AfiI	CCNNNNNNNGG	3 cut(s)	51, 281, 348
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	252, 534, 656, 703
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	321
AleI	CACNNNNGTG	2 cut(s)	782, 853
AluBI	AGCT	7 cut(s)	34, 60, 221, 379, 386, 754, 816
AluI	AGCT	7 cut(s)	34, 60, 221, 379, 386, 754, 816
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	2 cut(s)	114, 383
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	284, 449
AsuHPI	GGTGA	3 cut(s)	439, 629, 769
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	284, 449
BaeGI	GKGCMC	1 cut(s)	834
BanI	GGYRCC	2 cut(s)	257, 831
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	101, 395
BccI	CCATC	3 cut(s)	113, 476, 704
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	323
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	3 cut(s)	380, 581, 720
BisI	GCNGC	3 cut(s)	115, 210, 384
BlpI	GCTNAGC	2 cut(s)	56, 511
BlsI	GCNGC	3 cut(s)	116, 211, 385
BmcAI	AGTACT	2 cut(s)	500, 671
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	284, 449
BmgT120I	GGNCC	2 cut(s)	284, 449
BmiI	GGNNCC	3 cut(s)	43, 259, 833
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	2 cut(s)	428, 776
BmsI	GCATC	2 cut(s)	91, 146
BmtI	GCTAGC	1 cut(s)	383
BmuI	ACTGGG	2 cut(s)	428, 776
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	2 cut(s)	56, 511
BpuEI	CTTGAG	2 cut(s)	82, 479
BsaJI	CCNNGG	1 cut(s)	640
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 281, 348
Bse118I	RCCGGY	2 cut(s)	110, 175
Bse1I	ACTGG	4 cut(s)	353, 434, 511, 782
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	5 cut(s)	10, 137, 397, 489, 565
BseLI	CCNNNNNNNGG	3 cut(s)	51, 281, 348
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	47, 525
BseNI	ACTGG	4 cut(s)	353, 434, 511, 782
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	2 cut(s)	101, 395
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	2 cut(s)	257, 831
BsiEI	CGRYCG	1 cut(s)	610
BsiSI	CCGG	3 cut(s)	111, 176, 606
BslI	CCNNNNNNNGG	3 cut(s)	51, 281, 348
BsnI	GGCC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	2 cut(s)	56, 511
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	2 cut(s)	48, 524
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	43, 259, 833
BspOI	GCTAGC	1 cut(s)	383
BspT107I	GGYRCC	2 cut(s)	257, 831
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	2 cut(s)	110, 175
BsrI	ACTGG	4 cut(s)	353, 434, 511, 782
BssAI	RCCGGY	2 cut(s)	110, 175
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	6 cut(s)	199, 257, 370, 484, 641, 808
BstC8I	GCNNGC	3 cut(s)	112, 177, 381
BstDEI	CTNAG	3 cut(s)	56, 222, 511
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	5 cut(s)	10, 137, 397, 489, 565
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 218, 380, 627
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	101, 395
BstV2I	GAAGAC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	10, 137, 397, 489, 565
BtsI	GCAGTG	1 cut(s)	452
BtsIMutI	CAGTG	4 cut(s)	452, 480, 789, 804
Cac8I	GCNNGC	3 cut(s)	112, 177, 381
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	623
Cfr10I	RCCGGY	2 cut(s)	110, 175
Cfr13I	GGNCC	2 cut(s)	284, 449
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	3 cut(s)	352, 499, 670
CviAII	CATG	2 cut(s)	268, 551
CviQI	GTAC	3 cut(s)	352, 499, 670
DdeI	CTNAG	3 cut(s)	56, 222, 511
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	284, 449
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	271, 554
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	2 cut(s)	267, 550
FauNDI	CATATG	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	115, 210, 384
FokI	GGATG	5 cut(s)	17, 124, 404, 476, 572
Fsp4HI	GCNGC	3 cut(s)	115, 210, 384
FspBI	CTAG	3 cut(s)	380, 581, 720
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	3 cut(s)	115, 210, 384
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	3 cut(s)	111, 176, 606
HgaI	GACGC	1 cut(s)	619
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	2 cut(s)	271, 554
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	2 cut(s)	155, 305
HpaII	CCGG	3 cut(s)	111, 176, 606
HphI	GGTGA	3 cut(s)	439, 629, 769
Hpy166II	GTNNAC	5 cut(s)	265, 415, 430, 487, 777
Hpy188I	TCNGA	2 cut(s)	160, 217
Hpy188III	TCNNGA	3 cut(s)	80, 287, 811
Hpy8I	GTNNAC	5 cut(s)	265, 415, 430, 487, 777
HpyAV	CCTTC	2 cut(s)	32, 644
HpyCH4III	ACNGT	6 cut(s)	199, 257, 370, 484, 641, 808
HpyCH4V	TGCA	2 cut(s)	333, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 218, 380, 627
HpyF3I	CTNAG	3 cut(s)	56, 222, 511
Hsp92II	CATG	2 cut(s)	271, 554
HspAI	GCGC	1 cut(s)	621
KroI	GCCGGC	2 cut(s)	110, 175
KroNI	GCCGGC	2 cut(s)	112, 177
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	41, 315, 462
Lsp1109I	GCAGC	2 cut(s)	101, 395
LweI	GCATC	2 cut(s)	91, 146
MaeI	CTAG	3 cut(s)	380, 581, 720
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	5 cut(s)	68, 173, 232, 240, 719
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	3 cut(s)	529, 534, 840
MluI	ACGCGT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	293, 484
MnlI	CCTC	5 cut(s)	45, 401, 503, 607, 613
MroNI	GCCGGC	2 cut(s)	110, 175
MseI	TTAA	7 cut(s)	96, 146, 228, 555, 756, 837, 843
MslI	CAYNNNNRTG	3 cut(s)	581, 782, 853
MspI	CCGG	3 cut(s)	111, 176, 606
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	120, 218, 380, 627
NaeI	GCCGGC	2 cut(s)	112, 177
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	2 cut(s)	110, 175
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	271, 554
NlaIV	GGNNCC	3 cut(s)	43, 259, 833
NmeAIII	GCCGAG	1 cut(s)	649
NspI	RCATGY	1 cut(s)	554
OliI	CACNNNNGTG	2 cut(s)	782, 853
PceI	AGGCCT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdiI	GCCGGC	2 cut(s)	112, 177
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	806
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	3 cut(s)	116, 211, 385
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	43, 259, 833
PspPI	GGNCC	2 cut(s)	284, 449
PspPPI	RGGWCCY	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	806
RsaI	GTAC	3 cut(s)	353, 500, 671
RsaNI	GTAC	3 cut(s)	352, 499, 670
RseI	CAYNNNNRTG	3 cut(s)	581, 782, 853
SaqAI	TTAA	7 cut(s)	96, 146, 228, 555, 756, 837, 843
SatI	GCNGC	3 cut(s)	115, 210, 384
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	284, 449
ScaI	AGTACT	2 cut(s)	500, 671
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	91, 146
SinI	GGWCC	2 cut(s)	284, 449
SmiMI	CAYNNNNRTG	3 cut(s)	581, 782, 853
SmlI	CTYRAG	2 cut(s)	61, 494
SmoI	CTYRAG	2 cut(s)	61, 494
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	3 cut(s)	529, 534, 840
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	3 cut(s)	380, 581, 720
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	6 cut(s)	199, 257, 370, 484, 641, 808
TaqI	TCGA	3 cut(s)	72, 81, 300
TasI	AATT	3 cut(s)	529, 534, 840
TatI	WGTACW	2 cut(s)	498, 669
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	7 cut(s)	96, 146, 228, 555, 756, 837, 843
Tru9I	TTAA	7 cut(s)	96, 146, 228, 555, 756, 837, 843
TscAI	CASTG	4 cut(s)	459, 487, 789, 811
TseI	GCWGC	2 cut(s)	114, 383
TspDTI	ATGAA	4 cut(s)	11, 284, 408, 603
TspRI	CASTG	4 cut(s)	459, 487, 789, 811
Tth111I	GACNNNGTC	1 cut(s)	806
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	284, 449
XceI	RCATGY	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	3 cut(s)	380, 581, 720
ZrmI	AGTACT	2 cut(s)	500, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.