Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

21032025 .. 21033091

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACCCCGCCAGGGGTCCTGATGTGGTGGTTGATGAGTCTTGTTGGAGTGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGTTGAGGCCAAAGAGAAAGGGGTGGACTTGGTGGTGGTGAATCCAGTGCTAGTGCTCGGACCACTTCTGCAATCAACTGTCAACGCTAGCACCATTCACATCCTCAAGTACCTGACGGGCTCAACCCAGACATATGCCAATTCAGTTCAAGGCTACGTGCATGTTAGGGACGTCGCACTGGCTCACATTCTGGTCTATGAGACACCCTCTGCCTCTGGCAGATATATTTGTGCTGAGAGTGTGCTCCACCGTGGCGACGTGGTGGAAATCCTGGCCAAATTCTTCCCGAAATACCCTATTCCCAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

145

Amino Acids

15.9

Weight (kDa)

6.05

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	81
AciI	CCGC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	59, 401
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	86, 233
AfiI	CCNNNNNNNGG	3 cut(s)	13, 14, 81
AgsI	TTSAA	2 cut(s)	59, 272
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	11, 393
Alw21I	GWGCWC	2 cut(s)	180, 369
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	129, 396
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	59, 401
AspS9I	GGNCC	3 cut(s)	4, 17, 182
AsuHPI	GGTGA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	4, 17, 182
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	180, 369
BbvI	GCAGC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	13, 395
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	173, 210
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	13, 395
Bme18I	GGWCC	3 cut(s)	4, 17, 182
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	3 cut(s)	4, 17, 182
BmiI	GGNNCC	2 cut(s)	6, 18
BmrFI	CCNGG	2 cut(s)	13, 395
BmtI	GCTAGC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	12, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 14, 81
Bse1I	ACTGG	3 cut(s)	86, 167, 306
BseBI	CCWGG	2 cut(s)	13, 395
BseDI	CCNNGG	2 cut(s)	12, 373
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	3 cut(s)	13, 14, 81
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	86, 167, 306
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	2 cut(s)	131, 398
BsiHKAI	GWGCWC	2 cut(s)	180, 369
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	13, 14, 81
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	131, 398
Bsp1286I	GDGCHC	3 cut(s)	180, 245, 369
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	131, 398
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	6, 18
BspOI	GCTAGC	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	86, 167, 306
BssECI	CCNNGG	2 cut(s)	12, 373
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	13, 395
Bst4CI	ACNGT	2 cut(s)	202, 374
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	114, 211
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	13, 395
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	11, 393
BstV1I	GCAGC	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	131, 398
BtgI	CCRYGG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 174, 299
Cac8I	GCNNGC	2 cut(s)	114, 211
Cfr13I	GGNCC	3 cut(s)	4, 17, 182
Csp6I	GTAC	2 cut(s)	85, 232
CviAII	CATG	2 cut(s)	120, 284
CviJI	RGCY	5 cut(s)	131, 243, 276, 305, 398
CviKI_1	RGCY	5 cut(s)	131, 243, 276, 305, 398
CviQI	GTAC	2 cut(s)	85, 232
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	3 cut(s)	4, 17, 182
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	11, 393
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	2 cut(s)	123, 287
FaiI	YATR	7 cut(s)	93, 121, 256, 258, 285, 321, 348
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	119, 283
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	173, 210
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	131, 398
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	123, 287
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	38, 163
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	148, 205
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	3 cut(s)	20, 56, 409
Hpy8I	GTNNAC	2 cut(s)	148, 205
Hpy99I	CGWCG	2 cut(s)	299, 383
HpyCH4III	ACNGT	2 cut(s)	202, 374
HpyCH4IV	ACGT	3 cut(s)	279, 294, 381
HpyCH4V	TGCA	3 cut(s)	66, 193, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	3 cut(s)	279, 294, 381
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	123, 287
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	173, 210
MaeII	ACGT	3 cut(s)	279, 294, 381
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	180, 245, 369
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	59, 262, 401
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	121, 236, 340, 346
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	13, 395
MvaI	CCWGG	2 cut(s)	13, 395
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	52
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	123, 287
NlaIV	GGNNCC	2 cut(s)	6, 18
NspI	RCATGY	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	11, 393
PspGI	CCWGG	2 cut(s)	11, 393
PspN4I	GGNNCC	2 cut(s)	6, 18
PspPI	GGNCC	3 cut(s)	4, 17, 182
PspPPI	RGGWCCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	86, 233
RsaNI	GTAC	2 cut(s)	85, 232
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	3 cut(s)	4, 17, 182
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	13, 395
SduI	GDGCHC	3 cut(s)	180, 245, 369
SetI	ASST	4 cut(s)	237, 282, 297, 384
SinI	GGWCC	3 cut(s)	4, 17, 182
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	59, 262, 401
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	173, 210
StyD4I	CCNGG	2 cut(s)	11, 393
TaaI	ACNGT	2 cut(s)	202, 374
TaiI	ACGT	3 cut(s)	282, 297, 384
TasI	AATT	3 cut(s)	59, 262, 401
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	3 cut(s)	108, 174, 306
TseI	GCWGC	1 cut(s)	116
TspRI	CASTG	3 cut(s)	108, 174, 306
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	3 cut(s)	4, 17, 182
XapI	RAATTY	2 cut(s)	59, 401
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	2 cut(s)	173, 210
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.