Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

32896279 .. 32954421

Gene Structure 58143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTGATGATCAGAGATCCTCACTTTCTGGCAAAGGCCAAACTGTGTGTGTTACTGGGGCCGGAGGCTACATCGCTTCTTGGATTGTCAAGCTCCTTCTGGAGAGAGGCTATCATGTGAGAGGAACTTCGAGAAACCCAGATGACCCAAAGAATGTTCATTTGAGAGAGCTGGAAGGAGCCAGAGAGAGGCTGAGCTTGAGAAAAGTCGATCTTCTCGATTTAGAGAGCCTTAAAGATGCCATTGCCGGCTGCGATGGCATTTTCCACACAGCATCCCCTTTAACTAATGATCCGGAAGAAATGGTGTCGCCGGCTGTGAATGGAACAAAGAATGTGATCGTTGCCGCTTCTGAAGCTAAGGTTAAACGCGTGGTCTTCACATCATCAAACGGTGCCGTCTACATGAACCCCACCAGAGGTCCCGATGTGGTTGTCGATGAGTCCTGTTGGAGCGACCTGGAGTTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAACCGTGGCAGAGCTAGCAGCTTGGGATGAAGCCAAAGAGAGAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTATGTGCTTGGACCACTGCTCCAACCGACCATCAACATTAGCACTGTCCACATCCTCAAGTACTTGACTGGCTCAGCCAAGACTTATGCCAATTCAATTCAGGCCTATGTGCATGTTAAGGATGTGGCATTAGCACACATACTAGTGTATGAAACTCCCTCTGCCTCCGGTCGTTATCTTTGCGGCGACAGCGTCCTTCACCGTGGAGATGTGGTTGAAATCCTTGCCAAGTACTTCCCTGAATACCCAATACCCACCAAGTTGAAAGATGATGGAAAACCCAGAGCAAAACCATACAAGTTCTCCAACCAGAAGCTACAAGACTTGGGTTTGGAGTTCACCCCAGTGGTACAGAGCCTATGTGACACTGTCAAGAGCTTGCAGGACAAGGGGCACCTTAAAGTTCCTACAAAACAAGAAGAAGACTCCATTCAGATCCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

340

Amino Acids

37.48

Weight (kDa)

6.46

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	14 - 133	2.8e-12	NmrA-like family
Epimerase	PF01370	16 - 248	2.4e-26	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	16 - 139	2.6e-07	Polysaccharide biosynthesis protein
3Beta_HSD	PF01073	18 - 241	4.3e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	18 - 263	1.1e-10	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	20 - 135	6.8e-16	NAD(P)H-binding
NAD_binding_4	PF07993	75 - 200	8.2e-08	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	395, 969
AccB7I	CCANNNNNTGG	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	2 cut(s)	348, 759
AclWI	GGATC	3 cut(s)	12, 287, 1006
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	4 cut(s)	491, 638, 809, 927
AfiI	CCNNNNNNNGG	3 cut(s)	189, 419, 486
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	672, 794, 841
AhlI	ACTAGT	1 cut(s)	718
AjnI	CCWGG	1 cut(s)	459
AleI	CACNNNNGTG	1 cut(s)	920
AluBI	AGCT	8 cut(s)	94, 172, 198, 359, 517, 524, 892, 954
AluI	AGCT	8 cut(s)	94, 172, 198, 359, 517, 524, 892, 954
AlwI	GGATC	3 cut(s)	12, 287, 1006
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	3 cut(s)	37, 60, 678
ApeKI	GCWGC	2 cut(s)	252, 521
AspS9I	GGNCC	3 cut(s)	60, 422, 587
AsuHPI	GGTGA	3 cut(s)	577, 767, 907
AsuNHI	GCTAGC	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	422, 587
BaeGI	GKGCMC	1 cut(s)	972
BanI	GGYRCC	2 cut(s)	395, 969
BbsI	GAAGAC	2 cut(s)	370, 1005
BbvI	GCAGC	2 cut(s)	239, 533
BccI	CCATC	3 cut(s)	251, 614, 842
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	461
BclI	TGATCA	1 cut(s)	10
BcuI	ACTAGT	1 cut(s)	718
BfaI	CTAG	2 cut(s)	518, 719
BisI	GCNGC	4 cut(s)	253, 348, 522, 760
BlpI	GCTNAGC	2 cut(s)	194, 649
BlsI	GCNGC	4 cut(s)	254, 349, 523, 761
BmcAI	AGTACT	2 cut(s)	638, 809
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	422, 587
BmgT120I	GGNCC	3 cut(s)	60, 422, 587
BmiI	GGNNCC	5 cut(s)	61, 181, 397, 424, 971
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	3 cut(s)	66, 566, 914
BmsI	GCATC	2 cut(s)	229, 284
BmtI	GCTAGC	1 cut(s)	521
BmuI	ACTGGG	3 cut(s)	66, 566, 914
BpiI	GAAGAC	2 cut(s)	370, 1005
BpmI	CTGGAG	2 cut(s)	122, 482
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	2 cut(s)	194, 649
BpuEI	CTTGAG	2 cut(s)	220, 617
BsaJI	CCNNGG	2 cut(s)	507, 778
BsaWI	WCCGGW	2 cut(s)	295, 743
BsaXI	ACNNNNNCTCC	6 cut(s)	579, 609, 774, 804, 863, 893
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 419, 486
Bse118I	RCCGGY	2 cut(s)	248, 313
Bse1I	ACTGG	5 cut(s)	61, 491, 572, 649, 920
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	507, 778
BseGI	GGATG	4 cut(s)	275, 535, 627, 703
BseLI	CCNNNNNNNGG	3 cut(s)	189, 419, 486
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	185, 663
BseNI	ACTGG	5 cut(s)	61, 491, 572, 649, 920
BseSI	GKGCMC	1 cut(s)	972
BseXI	GCAGC	2 cut(s)	239, 533
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	3 cut(s)	39, 62, 680
BshNI	GGYRCC	2 cut(s)	395, 969
BsiEI	CGRYCG	1 cut(s)	748
BsiSI	CCGG	5 cut(s)	63, 249, 296, 314, 744
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	189, 419, 486
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	3 cut(s)	39, 62, 680
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
Bsp1720I	GCTNAGC	2 cut(s)	194, 649
BspACI	CCGC	2 cut(s)	348, 759
BspANI	GGCC	3 cut(s)	39, 62, 680
BspCNI	CTCAG	2 cut(s)	186, 662
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	5 cut(s)	61, 181, 397, 424, 971
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	12, 287, 1006
BspT107I	GGYRCC	2 cut(s)	395, 969
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	248, 313
BsrI	ACTGG	5 cut(s)	61, 491, 572, 649, 920
BssAI	RCCGGY	2 cut(s)	248, 313
BssECI	CCNNGG	2 cut(s)	507, 778
BssMI	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	6 cut(s)	46, 395, 508, 622, 779, 946
BstC8I	GCNNGC	4 cut(s)	250, 315, 519, 956
BstDEI	CTNAG	3 cut(s)	194, 360, 649
BstDSI	CCRYGG	2 cut(s)	507, 778
BstF5I	GGATG	4 cut(s)	275, 535, 627, 703
BstFNI	CGCG	1 cut(s)	372
BstKTI	GATC	6 cut(s)	13, 20, 214, 295, 342, 1014
BstMBI	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 356, 518, 765
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	972
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	239, 533
BstV2I	GAAGAC	2 cut(s)	370, 1005
BstX2I	RGATCY	2 cut(s)	17, 1011
BstYI	RGATCY	2 cut(s)	17, 1011
BsuRI	GGCC	3 cut(s)	39, 62, 680
BtgI	CCRYGG	2 cut(s)	507, 778
BtgZI	GCGATG	2 cut(s)	58, 270
BtsCI	GGATG	4 cut(s)	275, 535, 627, 703
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	4 cut(s)	590, 618, 927, 942
Cac8I	GCNNGC	4 cut(s)	250, 315, 519, 956
Cfr10I	RCCGGY	2 cut(s)	248, 313
Cfr13I	GGNCC	3 cut(s)	60, 422, 587
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	4 cut(s)	490, 637, 808, 926
CviAII	CATG	3 cut(s)	116, 406, 689
CviQI	GTAC	4 cut(s)	490, 637, 808, 926
DdeI	CTNAG	3 cut(s)	194, 360, 649
DpnI	GATC	6 cut(s)	12, 19, 213, 294, 341, 1013
DpnII	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
Eco147I	AGGCCT	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	422, 587
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	119, 409, 692
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	115, 405, 688
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	253, 348, 522, 760
FokI	GGATG	4 cut(s)	262, 542, 614, 710
Fsp4HI	GCNGC	4 cut(s)	253, 348, 522, 760
FspBI	CTAG	2 cut(s)	518, 719
GluI	GCNGC	4 cut(s)	253, 348, 522, 760
GsuI	CTGGAG	2 cut(s)	122, 482
HaeIII	GGCC	3 cut(s)	39, 62, 680
HapII	CCGG	5 cut(s)	63, 249, 296, 314, 744
HgaI	GACGC	1 cut(s)	757
Hin1II	CATG	3 cut(s)	119, 409, 692
HinfI	GANTC	2 cut(s)	443, 1001
HpaII	CCGG	5 cut(s)	63, 249, 296, 314, 744
HphI	GGTGA	3 cut(s)	577, 767, 907
Hpy166II	GTNNAC	5 cut(s)	403, 553, 568, 625, 915
Hpy188I	TCNGA	4 cut(s)	7, 15, 355, 1011
Hpy188III	TCNNGA	6 cut(s)	101, 132, 218, 296, 425, 949
Hpy8I	GTNNAC	5 cut(s)	403, 553, 568, 625, 915
HpyAV	CCTTC	3 cut(s)	107, 170, 782
HpyCH4III	ACNGT	6 cut(s)	46, 395, 508, 622, 779, 946
HpyCH4V	TGCA	3 cut(s)	471, 688, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 356, 518, 765
HpyF3I	CTNAG	3 cut(s)	194, 360, 649
Hsp92II	CATG	3 cut(s)	119, 409, 692
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	2 cut(s)	248, 313
KroNI	GCCGGC	2 cut(s)	250, 315
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
LmnI	GCTCC	4 cut(s)	99, 179, 453, 600
Lsp1109I	GCAGC	2 cut(s)	239, 533
LweI	GCATC	2 cut(s)	229, 284
MaeI	CTAG	2 cut(s)	518, 719
MaeIII	GTNAC	2 cut(s)	52, 938
MalI	GATC	6 cut(s)	12, 19, 213, 294, 341, 1013
MboI	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
MboII	GAAGA	5 cut(s)	206, 311, 370, 1007, 1010
MflI	RGATCY	2 cut(s)	17, 1011
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	3 cut(s)	667, 672, 1016
MluI	ACGCGT	1 cut(s)	370
MlyI	GAGTC	2 cut(s)	452, 995
MmeI	TCCRAC	3 cut(s)	431, 622, 906
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	2 cut(s)	248, 313
MseI	TTAA	6 cut(s)	234, 284, 366, 693, 975, 1021
MslI	CAYNNNNRTG	2 cut(s)	719, 920
MspI	CCGG	5 cut(s)	63, 249, 296, 314, 744
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	258, 356, 518, 765
NaeI	GCCGGC	2 cut(s)	250, 315
NdeII	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
NgoMIV	GCCGGC	2 cut(s)	248, 313
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	3 cut(s)	119, 409, 692
NlaIV	GGNNCC	5 cut(s)	61, 181, 397, 424, 971
NmuCI	GTSAC	1 cut(s)	938
NspI	RCATGY	1 cut(s)	692
OliI	CACNNNNGTG	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdiI	GCCGGC	2 cut(s)	250, 315
PflFI	GACNNNGTC	2 cut(s)	767, 944
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	4 cut(s)	254, 349, 523, 761
PleI	GAGTC	2 cut(s)	451, 995
PpsI	GAGTC	2 cut(s)	451, 995
PpuMI	RGGWCCY	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	5 cut(s)	61, 181, 397, 424, 971
PspPI	GGNCC	3 cut(s)	60, 422, 587
PspPPI	RGGWCCY	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	17, 1011
PsyI	GACNNNGTC	2 cut(s)	767, 944
RsaI	GTAC	4 cut(s)	491, 638, 809, 927
RsaNI	GTAC	4 cut(s)	490, 637, 808, 926
RseI	CAYNNNNRTG	2 cut(s)	719, 920
SaqAI	TTAA	6 cut(s)	234, 284, 366, 693, 975, 1021
SatI	GCNGC	4 cut(s)	253, 348, 522, 760
Sau3AI	GATC	6 cut(s)	10, 17, 211, 292, 339, 1011
Sau96I	GGNCC	3 cut(s)	60, 422, 587
ScaI	AGTACT	2 cut(s)	638, 809
SchI	GAGTC	2 cut(s)	452, 995
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	2 cut(s)	229, 284
SinI	GGWCC	2 cut(s)	422, 587
SmiMI	CAYNNNNRTG	2 cut(s)	719, 920
SmlI	CTYRAG	2 cut(s)	199, 632
SmoI	CTYRAG	2 cut(s)	199, 632
SpeI	ACTAGT	1 cut(s)	718
Sse9I	AATT	3 cut(s)	667, 672, 1016
SseBI	AGGCCT	1 cut(s)	680
SsiI	CCGC	2 cut(s)	348, 759
SspMI	CTAG	2 cut(s)	518, 719
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	6 cut(s)	46, 395, 508, 622, 779, 946
TaqI	TCGA	4 cut(s)	131, 210, 219, 438
TasI	AATT	3 cut(s)	667, 672, 1016
TatI	WGTACW	2 cut(s)	636, 807
TauI	GCSGC	2 cut(s)	350, 762
Tru1I	TTAA	6 cut(s)	234, 284, 366, 693, 975, 1021
Tru9I	TTAA	6 cut(s)	234, 284, 366, 693, 975, 1021
TscAI	CASTG	4 cut(s)	597, 625, 927, 949
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	2 cut(s)	252, 521
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	4 cut(s)	149, 422, 546, 741
TspRI	CASTG	4 cut(s)	597, 625, 927, 949
Tth111I	GACNNNGTC	2 cut(s)	767, 944
Van91I	CCANNNNNTGG	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	422, 587
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	518, 719
ZrmI	AGTACT	2 cut(s)	638, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.