Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034151.1

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2165

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034151.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 698 bp

atgacccaaagaatgctcatttgagggagctggaaggagccagagagaggctgagcttgcgaaaagccgatcttctcgatttcgagagcctgaaagatgccattaacggctgtgatggcgttttccacacagcgtcgcctgtaactgatgatccggaacaaatggtggagccggcagtgaatggaacaaagaacgtgattgtcgccgcttctgaggccaaggttaaacgcgtggtcttcacgtcttcaatcggtgccgtgtacatggacccgaccagaggtcccgatgtggttgttgatgagtcatgttggagtgatctggagttttgcaagaacaccaagaactggtactgctatgggaaagctgtggcggagcaagcagcgtgggatgaggccaaagagaaaggagtagacttggtggtggtgaacccagttttggtgcttggaccactgctccaaccaaccatcaacgccagcattatccacgtcctcaagtacttgactggctcggccaagacttacgccaattctgttcaggcctatgtgcatgttaaggacgtggcattagcacacatactggtgtatgagactccctcggcatctggccgttatctttgtgccgagagcgtccttcaccgtggagatgtagttgaaatccttgccaagttcttccctgaatacccgatacccaccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

231

Amino Acids

25.3

Weight (kDa)

5.4

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	410
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	206, 370
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	509, 603
AfaI	GTAC	3 cut(s)	262, 349, 496
AfiI	CCNNNNNNNGG	4 cut(s)	47, 277, 344, 435
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	248, 652
AhdI	GACNNNNNGTC	1 cut(s)	278
AjiI	CACGTC	3 cut(s)	242, 486, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	3 cut(s)	30, 56, 364
AluI	AGCT	3 cut(s)	30, 56, 364
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	5 cut(s)	215, 392, 509, 536, 603
ApeKI	GCWGC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	267, 280, 445
AsuHPI	GGTGA	2 cut(s)	435, 625
AvaII	GGWCC	3 cut(s)	267, 280, 445
BanI	GGYRCC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	228, 236
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	109, 472
BceAI	ACGGC	3 cut(s)	123, 241, 590
BcoDI	GTCTC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	206, 380
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	2 cut(s)	207, 381
BmcAI	AGTACT	1 cut(s)	496
Bme18I	GGWCC	3 cut(s)	267, 280, 445
BmeRI	GACNNNNNGTC	1 cut(s)	278
BmgBI	CACGTC	3 cut(s)	242, 486, 558
BmgT120I	GGNCC	3 cut(s)	267, 280, 445
BmiI	GGNNCC	5 cut(s)	39, 170, 255, 269, 282
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	2 cut(s)	87, 607
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	2 cut(s)	228, 236
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	340
Bpu1102I	GCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	218, 593, 636
BsaWI	WCCGGW	1 cut(s)	153
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 632, 662
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 277, 344, 435
Bse118I	RCCGGY	1 cut(s)	171
Bse1I	ACTGG	4 cut(s)	349, 430, 507, 581
BseAI	TCCGGA	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	218, 593, 636
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	47, 277, 344, 435
BseMII	CTCAG	2 cut(s)	43, 203
BseNI	ACTGG	4 cut(s)	349, 430, 507, 581
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	5 cut(s)	217, 394, 511, 538, 605
BshNI	GGYRCC	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	154, 172
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	4 cut(s)	47, 277, 344, 435
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	217, 394, 511, 538, 605
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	69, 150, 315
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	206, 370
BspANI	GGCC	5 cut(s)	217, 394, 511, 538, 605
BspCNI	CTCAG	2 cut(s)	44, 204
BspEI	TCCGGA	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	5 cut(s)	39, 170, 255, 269, 282
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	4 cut(s)	349, 430, 507, 581
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	218, 593, 636
BssMI	GATC	3 cut(s)	69, 150, 315
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	637
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	58, 173, 377, 474
BstDEI	CTNAG	2 cut(s)	52, 212
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	3 cut(s)	72, 153, 318
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	69, 150, 315
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 116, 214, 376
BstNSI	RCATGY	1 cut(s)	550
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	228, 236
BsuRI	GGCC	5 cut(s)	217, 394, 511, 538, 605
BtgI	CCRYGG	1 cut(s)	636
BtrI	CACGTC	3 cut(s)	242, 486, 558
BtsCI	GGATG	1 cut(s)	393
BtsI	GCAGTG	2 cut(s)	182, 448
BtsIMutI	CAGTG	2 cut(s)	182, 448
Cac8I	GCNNGC	4 cut(s)	58, 173, 377, 474
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	267, 280, 445
CseI	GACGC	2 cut(s)	122, 615
Csp6I	GTAC	3 cut(s)	261, 348, 495
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	3 cut(s)	264, 305, 547
CviQI	GTAC	3 cut(s)	261, 348, 495
DdeI	CTNAG	2 cut(s)	52, 212
DpnI	GATC	3 cut(s)	71, 152, 317
DpnII	GATC	3 cut(s)	69, 150, 315
DriI	GACNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	2 cut(s)	509, 603
Eam1105I	GACNNNNNGTC	1 cut(s)	278
EciI	GGCGGA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	267, 280, 445
EcoO109I	RGGNCCY	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	3 cut(s)	267, 308, 550
FaiI	YATR	7 cut(s)	265, 306, 356, 542, 548, 574, 584
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	3 cut(s)	263, 304, 546
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	206, 380
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	206, 380
GluI	GCNGC	2 cut(s)	206, 380
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	5 cut(s)	217, 394, 511, 538, 605
HapII	CCGG	2 cut(s)	154, 172
HgaI	GACGC	2 cut(s)	122, 615
Hin1II	CATG	3 cut(s)	267, 308, 550
HinfI	GANTC	2 cut(s)	301, 588
HpaII	CCGG	2 cut(s)	154, 172
HphI	GGTGA	2 cut(s)	435, 625
Hpy166II	GTNNAC	3 cut(s)	261, 411, 426
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	5 cut(s)	76, 84, 154, 283, 319
Hpy8I	GTNNAC	3 cut(s)	261, 411, 426
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	28, 640
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	4 cut(s)	194, 241, 485, 557
HpyCH4V	TGCA	2 cut(s)	329, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 116, 214, 376
HpyF3I	CTNAG	2 cut(s)	52, 212
HpySE526I	ACGT	4 cut(s)	194, 241, 485, 557
Hsp92II	CATG	3 cut(s)	267, 308, 550
Kpn2I	TCCGGA	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	69, 150, 315
LmnI	GCTCC	5 cut(s)	27, 37, 168, 372, 458
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	2 cut(s)	87, 607
MaeII	ACGT	4 cut(s)	194, 241, 485, 557
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	3 cut(s)	71, 152, 317
MboI	GATC	3 cut(s)	69, 150, 315
MboII	GAAGA	4 cut(s)	64, 228, 236, 660
MluCI	AATT	1 cut(s)	525
MluI	ACGCGT	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	310, 582
MmeI	TCCRAC	2 cut(s)	289, 480
MnlI	CCTC	7 cut(s)	17, 41, 207, 271, 384, 499, 603
MroI	TCCGGA	1 cut(s)	153
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	3 cut(s)	104, 224, 551
MslI	CAYNNNNRTG	1 cut(s)	577
MspI	CCGG	2 cut(s)	154, 172
Mva1269I	GAATGC	1 cut(s)	18
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	4 cut(s)	57, 116, 214, 376
NaeI	GCCGGC	1 cut(s)	173
NdeII	GATC	3 cut(s)	69, 150, 315
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	267, 308, 550
NlaIV	GGNNCC	5 cut(s)	39, 170, 255, 269, 282
NmeAIII	GCCGAG	3 cut(s)	487, 574, 645
NspI	RCATGY	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	538
PctI	GAATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	207, 381
PleI	GAGTC	2 cut(s)	309, 582
PpsI	GAGTC	2 cut(s)	309, 582
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspN4I	GGNNCC	5 cut(s)	39, 170, 255, 269, 282
PspPI	GGNCC	3 cut(s)	267, 280, 445
PspPPI	RGGWCCY	1 cut(s)	280
RsaI	GTAC	3 cut(s)	262, 349, 496
RsaNI	GTAC	3 cut(s)	261, 348, 495
RseI	CAYNNNNRTG	1 cut(s)	577
SaqAI	TTAA	3 cut(s)	104, 224, 551
SatI	GCNGC	2 cut(s)	206, 380
Sau3AI	GATC	3 cut(s)	69, 150, 315
Sau96I	GGNCC	3 cut(s)	267, 280, 445
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	2 cut(s)	310, 582
SetI	ASST	9 cut(s)	32, 58, 197, 224, 244, 282, 366, 488, 560
SfaNI	GCATC	2 cut(s)	87, 607
SinI	GGWCC	3 cut(s)	267, 280, 445
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	1 cut(s)	525
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	206, 370
StuI	AGGCCT	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	4 cut(s)	197, 244, 488, 560
TaqI	TCGA	2 cut(s)	77, 83
TasI	AATT	1 cut(s)	525
TatI	WGTACW	2 cut(s)	260, 494
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	104, 224, 551
Tru9I	TTAA	3 cut(s)	104, 224, 551
TscAI	CASTG	2 cut(s)	182, 455
TseI	GCWGC	1 cut(s)	379
TspRI	CASTG	2 cut(s)	182, 455
Van91I	CCANNNNNTGG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	267, 280, 445
XceI	RCATGY	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.