Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034152.1

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 545

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034152.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

tgatgagtcatgttggagtgatctggagttttgcaagaacaccaagaactggtactgctatgggaaagctgtggcggagcaagcagcgtgggatgaagccaaagagaaaggagtagacttggtggtggtgaacccagttttggtgcttggaccactgctccaaccaaccatcaacgccagcattatccacgtcctcaagtacttgactggctcggccaagacttacgccaattctgttcaggcctatgtgcatgttaaggacgtggcattagcacacatactggtgtatgaaactccctcggcatctggccgttatctttgcgccgagagcgtccttcaccgtggagatgtagttgaaatcctcgccaagttcttccctgaatacccgatacccaccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

133

Amino Acids

14.74

Weight (kDa)

5.76

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	2 cut(s)	214, 308
AfaI	GTAC	2 cut(s)	54, 201
AfiI	CCNNNNNNNGG	2 cut(s)	49, 140
AgsI	TTSAA	1 cut(s)	357
AjiI	CACGTC	2 cut(s)	191, 263
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
AoxI	GGCC	3 cut(s)	214, 241, 308
ApeKI	GCWGC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	140, 330
AvaII	GGWCC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmcAI	AGTACT	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	150
BmgBI	CACGTC	2 cut(s)	191, 263
BmgT120I	GGNCC	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	298, 341
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 337, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 140
Bse1I	ACTGG	4 cut(s)	54, 135, 212, 286
BseDI	CCNNGG	2 cut(s)	298, 341
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	49, 140
BseNI	ACTGG	4 cut(s)	54, 135, 212, 286
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	3 cut(s)	216, 243, 310
BslI	CCNNNNNNNGG	2 cut(s)	49, 140
BsnI	GGCC	3 cut(s)	216, 243, 310
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	216, 243, 310
BsrI	ACTGG	4 cut(s)	54, 135, 212, 286
BssECI	CCNNGG	2 cut(s)	298, 341
BssMI	GATC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	82, 179
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 328
BstNSI	RCATGY	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	96
BsuRI	GGCC	3 cut(s)	216, 243, 310
BtgI	CCRYGG	1 cut(s)	341
BtrI	CACGTC	2 cut(s)	191, 263
BtsCI	GGATG	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	82, 179
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	53, 200
CspCI	CAANNNNNGTGG	2 cut(s)	69, 104
CviAII	CATG	2 cut(s)	10, 252
CviJI	RGCY	6 cut(s)	69, 99, 211, 216, 243, 310
CviKI_1	RGCY	6 cut(s)	69, 99, 211, 216, 243, 310
CviQI	GTAC	2 cut(s)	53, 200
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	214, 308
EciI	GGCGGA	1 cut(s)	90
Eco147I	AGGCCT	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	150
FaeI	CATG	2 cut(s)	13, 255
FaiI	YATR	6 cut(s)	11, 61, 247, 253, 279, 289
FatI	CATG	2 cut(s)	9, 251
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	85
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	3 cut(s)	216, 243, 310
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	13, 255
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	140, 330
Hpy166II	GTNNAC	2 cut(s)	116, 131
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	116, 131
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	190, 262
HpyCH4V	TGCA	2 cut(s)	34, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 328
HpySE526I	ACGT	2 cut(s)	190, 262
Hsp92II	CATG	2 cut(s)	13, 255
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	77, 163
LpnPI	CCDG	9 cut(s)	9, 35, 148, 191, 193, 225, 267, 292, 391
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	2 cut(s)	190, 262
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	204, 308, 372
MseI	TTAA	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	81, 328
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	13, 255
NmeAIII	GCCGAG	3 cut(s)	192, 279, 350
NspI	RCATGY	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	2 cut(s)	54, 201
RsaNI	GTAC	2 cut(s)	53, 200
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	256
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	15
SetI	ASST	3 cut(s)	71, 193, 265
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	193, 265
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	256
Tru9I	TTAA	1 cut(s)	256
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	109, 304
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	115
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.