Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

36091956 .. 36096886

Gene Structure 4931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGACTGCTGATCAGAGCTCTTCACTTTCCGGCCACGGCCAAACTGTGTGTGTCACCGGGGCCGGAGGCTTCATCGCTTCTTGGTTGGTGAAGCTTCTTCTGGAGAGAGGCTATAATGTTAGAGGAACCGTGAGAAACCCAGATGACCCAAAGAATGCTCATTTGAGGGAGCTGGAAGGAGCCAGAGAGAGGCTGAGCTTGCGAAAAGCCGATCTTCTCGATTTCGAGAGCTTGAAAGATGCCATTAACGGCTGTGATGGCGTTTTCCACACAGCATCGCCTGTAACTGATGATCCGGAACAAATGGTGGAGCCGGCAGTGAATGGAACAAAGAACGTGATTGTTGCCGCTTCTGAAGCCAACGTTAAACGCGTGGTCTTCACATCTTCAATCGGTGCAGTGTACATGGACCCGACCAGAGGTCCGGATGTGGTTGTTGATGAGTCATGTTGGAGTGATCTGGAGTTTTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAGCTGTGGCGGAGCAAGCAGCGTGGGATGAGGCCAAAGAGAAAGGAGTAGACTTGGTGGTGGTGAACCCAGTTTTGGTGCTTGGACCACTGCTCCAACCAACCATCAACGCCAGCATTATCCACGTCCTCAAGTACTTGACTGGCTCGGCCAAGACTTACGCCAATTCTGTTCAGGCCTATGTGCATGTTAAGGACGTGGCATTAGCACACATACTGGTGTATGAAACTCCCTCGGCATCTGGCCGTTATCTTTGCGCCGAGAGCGTCCTTCACCGTGGAGATGTAGTTGAAATCCTCGCCAAGTTCTTCCCTGAATACCCGATACCCACCAAGTTGAAAGATGATGGGAAACCCAGAGCAATACCCTACAAGTTCTCAAATCAGAAGCTACAAGACTTGGGTTTGGAGTTCACTCCAGTCAAACAGAGCCTATATGATACTGTCAAGAGCTTGCAGGAGAAGGGTCACCTTAAAGTTCCTACAAAACAAGAAGAAAACTCCATTAAGATCCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

340

Amino Acids

37.29

Weight (kDa)

6.1

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	14 - 133	1.5e-12	NmrA-like family
Epimerase	PF01370	16 - 248	2.7e-29	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	16 - 135	5.8e-07	Polysaccharide biosynthesis protein
3Beta_HSD	PF01073	18 - 241	2.8e-22	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	18 - 265	9.7e-14	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	18 - 200	2e-10	Male sterility protein
NAD_binding_10	PF13460	20 - 136	4.5e-19	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	486
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	1 cut(s)	372
AccIII	TCCGGA	2 cut(s)	295, 424
AciI	CCGC	2 cut(s)	348, 512
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	2 cut(s)	287, 1006
AcoI	YGGCCR	4 cut(s)	31, 37, 651, 745
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	3 cut(s)	404, 491, 638
AfiI	CCNNNNNNNGG	4 cut(s)	189, 419, 486, 577
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	235, 390, 794, 841
AhdI	GACNNNNNGTC	1 cut(s)	420
AjiI	CACGTC	2 cut(s)	628, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	18, 94, 172, 198, 231, 506, 892, 954
AluI	AGCT	8 cut(s)	18, 94, 172, 198, 231, 506, 892, 954
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	287, 1006
Aor13HI	TCCGGA	2 cut(s)	295, 424
AoxI	GGCC	7 cut(s)	31, 37, 60, 534, 651, 678, 745
ApeKI	GCWGC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	4 cut(s)	60, 409, 422, 587
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	5 cut(s)	46, 100, 577, 767, 962
AvaII	GGWCC	3 cut(s)	409, 422, 587
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	3 cut(s)	251, 614, 842
BceAI	ACGGC	3 cut(s)	52, 265, 732
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	58
BisI	GCNGC	2 cut(s)	348, 522
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	2 cut(s)	349, 523
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	3 cut(s)	409, 422, 587
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmgBI	CACGTC	2 cut(s)	628, 700
BmgT120I	GGNCC	4 cut(s)	60, 409, 422, 587
BmiI	GGNNCC	5 cut(s)	61, 127, 181, 312, 411
BmrFI	CCNGG	1 cut(s)	58
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	3 cut(s)	229, 284, 749
BmuI	ACTGGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	370
BpmI	CTGGAG	3 cut(s)	122, 482, 903
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	34, 57, 735, 778
BsaWI	WCCGGW	2 cut(s)	295, 424
BsaXI	ACNNNNNCTCC	4 cut(s)	579, 609, 774, 804
Bsc4I	CCNNNNNNNGG	4 cut(s)	189, 419, 486, 577
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	5 cut(s)	491, 572, 649, 723, 920
BseAI	TCCGGA	2 cut(s)	295, 424
BseDI	CCNNGG	4 cut(s)	34, 57, 735, 778
BseGI	GGATG	2 cut(s)	433, 535
BseLI	CCNNNNNNNGG	4 cut(s)	189, 419, 486, 577
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	5 cut(s)	491, 572, 649, 723, 920
BseXI	GCAGC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	7 cut(s)	33, 39, 62, 536, 653, 680, 747
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	6 cut(s)	30, 57, 63, 296, 314, 425
BslI	CCNNNNNNNGG	4 cut(s)	189, 419, 486, 577
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	7 cut(s)	33, 39, 62, 536, 653, 680, 747
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp13I	TCCGGA	2 cut(s)	295, 424
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	10, 211, 292, 457, 1011
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	2 cut(s)	348, 512
BspANI	GGCC	7 cut(s)	33, 39, 62, 536, 653, 680, 747
BspCNI	CTCAG	1 cut(s)	186
BspEI	TCCGGA	2 cut(s)	295, 424
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	5 cut(s)	61, 127, 181, 312, 411
BspPI	GGATC	2 cut(s)	287, 1006
BspQI	GCTCTTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	313
BsrGI	TGTACA	1 cut(s)	402
BsrI	ACTGG	5 cut(s)	491, 572, 649, 723, 920
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	34, 57, 735, 778
BssMI	GATC	5 cut(s)	10, 211, 292, 457, 1011
Bst4CI	ACNGT	4 cut(s)	46, 130, 779, 946
Bst6I	CTCTTC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	402
BstC8I	GCNNGC	5 cut(s)	200, 315, 519, 616, 956
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	2 cut(s)	34, 778
BstEII	GGTNACC	1 cut(s)	968
BstF5I	GGATG	2 cut(s)	433, 535
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	5 cut(s)	13, 214, 295, 460, 1014
BstMBI	GATC	5 cut(s)	10, 211, 292, 457, 1011
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 258, 356, 518, 765
BstNSI	RCATGY	1 cut(s)	692
BstPI	GGTNACC	1 cut(s)	968
BstSCI	CCNGG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	533
BstV2I	GAAGAC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	1011
BstYI	RGATCY	1 cut(s)	1011
BsuRI	GGCC	7 cut(s)	33, 39, 62, 536, 653, 680, 747
BtgI	CCRYGG	2 cut(s)	34, 778
BtgZI	GCGATG	2 cut(s)	58, 261
BtrI	CACGTC	2 cut(s)	628, 700
BtsCI	GGATG	2 cut(s)	433, 535
BtsI	GCAGTG	3 cut(s)	324, 405, 590
BtsIMutI	CAGTG	3 cut(s)	324, 405, 590
Cac8I	GCNNGC	5 cut(s)	200, 315, 519, 616, 956
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	313
Cfr13I	GGNCC	4 cut(s)	60, 409, 422, 587
CseI	GACGC	1 cut(s)	757
Csp6I	GTAC	3 cut(s)	403, 490, 637
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	3 cut(s)	406, 447, 689
CviQI	GTAC	3 cut(s)	403, 490, 637
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	5 cut(s)	12, 213, 294, 459, 1013
DpnII	GATC	5 cut(s)	10, 211, 292, 457, 1011
DriI	GACNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	4 cut(s)	31, 37, 651, 745
Eam1104I	CTCTTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	409, 422, 587
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	968
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	3 cut(s)	409, 450, 692
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	3 cut(s)	405, 446, 688
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	348, 522
FokI	GGATG	2 cut(s)	440, 542
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	348, 522
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	348, 522
GsuI	CTGGAG	3 cut(s)	122, 482, 903
HaeIII	GGCC	7 cut(s)	33, 39, 62, 536, 653, 680, 747
HapII	CCGG	6 cut(s)	30, 57, 63, 296, 314, 425
HgaI	GACGC	1 cut(s)	757
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	3 cut(s)	409, 450, 692
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	6 cut(s)	30, 57, 63, 296, 314, 425
HphI	GGTGA	5 cut(s)	46, 100, 577, 767, 962
Hpy166II	GTNNAC	4 cut(s)	403, 553, 568, 915
Hpy188I	TCNGA	3 cut(s)	15, 355, 888
Hpy188III	TCNNGA	7 cut(s)	101, 218, 226, 296, 425, 461, 949
Hpy8I	GTNNAC	4 cut(s)	403, 553, 568, 915
HpyAV	CCTTC	3 cut(s)	170, 782, 958
HpyCH4III	ACNGT	4 cut(s)	46, 130, 779, 946
HpyCH4IV	ACGT	4 cut(s)	336, 363, 627, 699
HpyCH4V	TGCA	4 cut(s)	398, 471, 688, 958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 258, 356, 518, 765
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	4 cut(s)	336, 363, 627, 699
Hsp92II	CATG	3 cut(s)	409, 450, 692
HspAI	GCGC	1 cut(s)	759
Kpn2I	TCCGGA	2 cut(s)	295, 424
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	5 cut(s)	10, 211, 292, 457, 1011
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	5 cut(s)	169, 179, 310, 514, 600
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	3 cut(s)	229, 284, 749
MaeII	ACGT	4 cut(s)	336, 363, 627, 699
MaeIII	GTNAC	3 cut(s)	52, 283, 968
MalI	GATC	5 cut(s)	12, 213, 294, 459, 1013
MboI	GATC	5 cut(s)	10, 211, 292, 457, 1011
MboII	GAAGA	7 cut(s)	12, 89, 206, 370, 378, 802, 1007
MflI	RGATCY	1 cut(s)	1011
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	667
MluI	ACGCGT	1 cut(s)	370
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	431, 622
MroI	TCCGGA	2 cut(s)	295, 424
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	6 cut(s)	246, 366, 693, 975, 1008, 1021
MslI	CAYNNNNRTG	1 cut(s)	719
MspI	CCGG	6 cut(s)	30, 57, 63, 296, 314, 425
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	5 cut(s)	199, 258, 356, 518, 765
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	5 cut(s)	10, 211, 292, 457, 1011
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	409, 450, 692
NlaIV	GGNNCC	5 cut(s)	61, 127, 181, 312, 411
NmeAIII	GCCGAG	3 cut(s)	629, 716, 787
NmuCI	GTSAC	2 cut(s)	52, 968
NspI	RCATGY	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	680
PciSI	GCTCTTC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	160
PdiI	GCCGGC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	349, 523
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	968
PspN4I	GGNNCC	5 cut(s)	61, 127, 181, 312, 411
PspPI	GGNCC	4 cut(s)	60, 409, 422, 587
PsuI	RGATCY	1 cut(s)	1011
RsaI	GTAC	3 cut(s)	404, 491, 638
RsaNI	GTAC	3 cut(s)	403, 490, 637
RseI	CAYNNNNRTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	6 cut(s)	246, 366, 693, 975, 1008, 1021
SatI	GCNGC	2 cut(s)	348, 522
Sau3AI	GATC	5 cut(s)	10, 211, 292, 457, 1011
Sau96I	GGNCC	4 cut(s)	60, 409, 422, 587
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	3 cut(s)	229, 284, 749
SinI	GGWCC	3 cut(s)	409, 422, 587
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	1 cut(s)	667
SseBI	AGGCCT	1 cut(s)	680
SsiI	CCGC	2 cut(s)	348, 512
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	4 cut(s)	46, 130, 779, 946
TaiI	ACGT	4 cut(s)	339, 366, 630, 702
TaqI	TCGA	2 cut(s)	219, 225
TasI	AATT	1 cut(s)	667
TatI	WGTACW	2 cut(s)	402, 636
TauI	GCSGC	1 cut(s)	350
Tru1I	TTAA	6 cut(s)	246, 366, 693, 975, 1008, 1021
Tru9I	TTAA	6 cut(s)	246, 366, 693, 975, 1008, 1021
TscAI	CASTG	3 cut(s)	324, 405, 597
TseFI	GTSAC	2 cut(s)	52, 968
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	2 cut(s)	52, 968
TspDTI	ATGAA	2 cut(s)	61, 741
TspRI	CASTG	3 cut(s)	324, 405, 597
Van91I	CCANNNNNTGG	1 cut(s)	486
VpaK11BI	GGWCC	3 cut(s)	409, 422, 587
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	552
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.