Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Reverse (-)

13781672 .. 13786935

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCCAGCCGATAGCTTATCAGTTTCCGGCCACGGCCAAACTATTTGTGTCACCGGAGCTGGAGGCTTCATTGCTTCATGGATGGTGAAGCTATTGCTAGAAAGAGGCTACACTGTTAAAGGAACCTTGAGAAACCCAGATGACCCCAAAAATGCTCATTTGAGGGAGCTTGAAGGAGCTACAGAGAGACTAAGTTTGTGCAAAGCTGATCTCCTTGATTATGAGAGCCTCAAAGAAGCCATTAACGGCAGTGATGGAGTTTTTCACACAGCGTCACCTGTCACGGATGATCCAGAACAAATGGTGGAGCCGGCGGTGAACGGAACCAAGAATGTGATTCAAGCAGCGGCCGAAGCCAAGGTGAAACGGGTGGTCTTCACATCGTCAATTGGTGCGGTGTACATGGACCCCTCCAGGGGTCCTGAAGTGGTGGTCGACGAGTCTTGTTGGAGTGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTGTGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGAGGAGGCCAAAGAGAAAGGGGTGGACTTGGCGGTGGTGAACCCAGTGCTGGTGCTCGGACCACTTCTACAACCAACTGTCAATGCCAGCATCATTCACATCCTCAAGTACCTGACTGGCTCGACCAAGACTTATGCCAATTCAGTTCAAGCCTATGTGCATGTTAGGGATGTCGCATTGGCTCACATTTTGGTCTACGAGACACCCTCTGTCTCCGGCAGATACCTTTGTGCTGAGAGTGTGCTCCACCGTGGTGACGTTGTGGAAATCCTGGCCAAATTCTTCCCGGAATACCCTATTCCCAAGAAGTGTAAAGATAATGGGAAACCCAAAGTAGAACCATACAAGTTCACAAACCAGAAACTACGAGACTTAGGGTTGGAGTTCACACCAGTCAAACAAGCCCTATATGAAACTGTCAAGAGCTTGCAGGAGAAGGGTCACCTTCCAGTCCATACAAAACAAGAACAAGATTCCATTAAAATTCAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

340

Amino Acids

37.2

Weight (kDa)

6.17

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	483
AccI	GTMKAC	2 cut(s)	435, 720
AciI	CCGC	4 cut(s)	314, 347, 395, 557
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	4 cut(s)	28, 34, 348, 798
AcsI	RAATTY	3 cut(s)	461, 803, 1008
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	401, 488, 635
AfiI	CCNNNNNNNGG	4 cut(s)	415, 416, 483, 574
AgsI	TTSAA	4 cut(s)	173, 341, 461, 674
AjnI	CCWGG	2 cut(s)	413, 795
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	7 cut(s)	15, 59, 91, 169, 179, 206, 951
AluI	AGCT	7 cut(s)	15, 59, 91, 169, 179, 206, 951
Alw21I	GWGCWC	2 cut(s)	582, 771
Alw26I	GTCTC	4 cut(s)	181, 719, 742, 888
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	5 cut(s)	28, 34, 348, 531, 798
ApeKI	GCWGC	2 cut(s)	344, 518
ApoI	RAATTY	3 cut(s)	461, 803, 1008
AspS9I	GGNCC	3 cut(s)	406, 419, 584
AsuC2I	CCSGG	1 cut(s)	812
AsuHPI	GGTGA	8 cut(s)	43, 97, 267, 328, 373, 574, 791, 959
AvaII	GGWCC	3 cut(s)	406, 419, 584
BaeI	ACNNNNGTAYC	4 cut(s)	478, 511, 739, 772
BalI	TGGCCA	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	582, 771
BbvI	GCAGC	2 cut(s)	356, 530
BccI	CCATC	2 cut(s)	76, 248
BceAI	ACGGC	2 cut(s)	49, 262
BciT130I	CCWGG	2 cut(s)	415, 797
BcnI	CCSGG	1 cut(s)	812
BcoDI	GTCTC	4 cut(s)	181, 719, 742, 888
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	345, 348, 519
BlsI	GCNGC	3 cut(s)	346, 349, 520
Bme1390I	CCNGG	3 cut(s)	415, 797, 812
Bme18I	GGWCC	3 cut(s)	406, 419, 584
BmgT120I	GGNCC	3 cut(s)	406, 419, 584
BmiI	GGNNCC	5 cut(s)	124, 309, 325, 408, 420
BmrFI	CCNGG	3 cut(s)	415, 797, 812
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	624
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	2 cut(s)	81, 397
BpuEI	CTTGAG	2 cut(s)	148, 614
BpuMI	CCSGG	1 cut(s)	812
BsaJI	CCNNGG	4 cut(s)	31, 357, 414, 775
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 416, 483, 574
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	5 cut(s)	488, 569, 646, 917, 974
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	415, 797
BseDI	CCNNGG	4 cut(s)	31, 357, 414, 775
BseGI	GGATG	4 cut(s)	87, 292, 624, 700
BseLI	CCNNNNNNNGG	4 cut(s)	415, 416, 483, 574
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	5 cut(s)	488, 569, 646, 917, 974
BseRI	GAGGAG	1 cut(s)	542
BseX3I	CGGCCG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	356, 530
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	5 cut(s)	30, 36, 350, 533, 800
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	582, 771
BsiSI	CCGG	5 cut(s)	27, 54, 311, 741, 812
BslI	CCNNNNNNNGG	4 cut(s)	415, 416, 483, 574
BsmAI	GTCTC	4 cut(s)	181, 719, 742, 888
BsnI	GGCC	5 cut(s)	30, 36, 350, 533, 800
Bsp1286I	GDGCHC	2 cut(s)	582, 771
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	208, 289, 454
BspACI	CCGC	4 cut(s)	314, 347, 395, 557
BspANI	GGCC	5 cut(s)	30, 36, 350, 533, 800
BspCNI	CTCAG	1 cut(s)	751
BspLI	GGNNCC	5 cut(s)	124, 309, 325, 408, 420
BspPI	GGATC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	5 cut(s)	488, 569, 646, 917, 974
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	4 cut(s)	31, 357, 414, 775
BssMI	GATC	3 cut(s)	208, 289, 454
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	415, 797
Bst4CI	ACNGT	4 cut(s)	115, 604, 776, 943
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	5 cut(s)	6, 312, 516, 613, 953
BstDEI	CTNAG	3 cut(s)	191, 759, 898
BstDSI	CCRYGG	2 cut(s)	31, 775
BstEII	GGTNACC	1 cut(s)	965
BstF5I	GGATG	4 cut(s)	87, 292, 624, 700
BstKTI	GATC	3 cut(s)	211, 292, 457
BstMAI	GTCTC	4 cut(s)	181, 719, 742, 888
BstMBI	GATC	3 cut(s)	208, 289, 454
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 515
BstNI	CCWGG	2 cut(s)	415, 797
BstNSI	RCATGY	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	965
BstSCI	CCNGG	3 cut(s)	413, 795, 810
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	356, 530
BstV2I	GAAGAC	1 cut(s)	367
BstZI	CGGCCG	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	30, 36, 350, 533, 800
BtgI	CCRYGG	2 cut(s)	31, 775
BtsCI	GGATG	4 cut(s)	87, 292, 624, 700
BtsI	GCAGTG	2 cut(s)	256, 510
BtsIMutI	CAGTG	4 cut(s)	111, 256, 510, 576
Cac8I	GCNNGC	5 cut(s)	6, 312, 516, 613, 953
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	406, 419, 584
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	400, 487, 634
CviAII	CATG	4 cut(s)	78, 403, 522, 686
CviQI	GTAC	3 cut(s)	400, 487, 634
DdeI	CTNAG	3 cut(s)	191, 759, 898
DpnI	GATC	3 cut(s)	210, 291, 456
DpnII	GATC	3 cut(s)	208, 289, 454
EaeI	YGGCCR	4 cut(s)	28, 34, 348, 798
EagI	CGGCCG	1 cut(s)	348
EclXI	CGGCCG	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	3 cut(s)	406, 419, 584
Eco52I	CGGCCG	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	965
EcoO109I	RGGNCCY	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	965
EcoRII	CCWGG	2 cut(s)	413, 795
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	81, 406, 525, 689
FatI	CATG	4 cut(s)	77, 402, 521, 685
FblI	GTMKAC	2 cut(s)	435, 720
Fnu4HI	GCNGC	3 cut(s)	345, 348, 519
FokI	GGATG	4 cut(s)	94, 299, 611, 707
Fsp4HI	GCNGC	3 cut(s)	345, 348, 519
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	3 cut(s)	345, 348, 519
GsuI	CTGGAG	2 cut(s)	81, 397
HaeIII	GGCC	5 cut(s)	30, 36, 350, 533, 800
HapII	CCGG	5 cut(s)	27, 54, 311, 741, 812
HgaI	GACGC	1 cut(s)	261
Hin1II	CATG	4 cut(s)	81, 406, 525, 689
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	3 cut(s)	337, 440, 998
HpaII	CCGG	5 cut(s)	27, 54, 311, 741, 812
HphI	GGTGA	8 cut(s)	43, 97, 267, 328, 373, 574, 791, 959
Hpy166II	GTNNAC	8 cut(s)	319, 400, 436, 550, 565, 721, 876, 912
Hpy188I	TCNGA	1 cut(s)	584
Hpy188III	TCNNGA	4 cut(s)	293, 422, 458, 946
Hpy8I	GTNNAC	8 cut(s)	319, 400, 436, 550, 565, 721, 876, 912
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	167, 955, 980
HpyCH4III	ACNGT	4 cut(s)	115, 604, 776, 943
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	4 cut(s)	201, 468, 685, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 515
HpyF3I	CTNAG	3 cut(s)	191, 759, 898
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	4 cut(s)	81, 406, 525, 689
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	3 cut(s)	208, 289, 454
LmnI	GCTCC	5 cut(s)	56, 166, 176, 307, 774
Lsp1109I	GCAGC	2 cut(s)	356, 530
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	5 cut(s)	49, 273, 280, 779, 965
MalI	GATC	3 cut(s)	210, 291, 456
MboI	GATC	3 cut(s)	208, 289, 454
MboII	GAAGA	2 cut(s)	367, 799
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	582, 771
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	5 cut(s)	387, 461, 664, 803, 1008
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	428, 885
MnlI	CCTC	9 cut(s)	56, 98, 156, 239, 421, 520, 523, 638, 742
Mox20I	TGGCCA	1 cut(s)	800
MroNI	GCCGGC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	4 cut(s)	117, 243, 1005, 1018
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	5 cut(s)	27, 54, 311, 741, 812
MspR9I	CCNGG	3 cut(s)	415, 797, 812
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	2 cut(s)	415, 797
MwoI	GCNNNNNNNGC	2 cut(s)	353, 515
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	812
NdeII	GATC	3 cut(s)	208, 289, 454
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	81, 406, 525, 689
NlaIV	GGNNCC	5 cut(s)	124, 309, 325, 408, 420
NmuCI	GTSAC	5 cut(s)	49, 273, 280, 779, 965
NspI	RCATGY	1 cut(s)	689
OliI	CACNNNNGTG	1 cut(s)	777
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	337, 998
PflMI	CCANNNNNTGG	1 cut(s)	483
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	3 cut(s)	346, 349, 520
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	413, 795
PspEI	GGTNACC	1 cut(s)	965
PspGI	CCWGG	2 cut(s)	413, 795
PspN4I	GGNNCC	5 cut(s)	124, 309, 325, 408, 420
PspPI	GGNCC	3 cut(s)	406, 419, 584
PspPPI	RGGWCCY	1 cut(s)	419
RsaI	GTAC	3 cut(s)	401, 488, 635
RsaNI	GTAC	3 cut(s)	400, 487, 634
RseI	CAYNNNNRTG	1 cut(s)	777
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	117, 243, 1005, 1018
SatI	GCNGC	3 cut(s)	345, 348, 519
Sau3AI	GATC	3 cut(s)	208, 289, 454
Sau96I	GGNCC	3 cut(s)	406, 419, 584
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	415, 797, 812
SduI	GDGCHC	2 cut(s)	582, 771
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	3 cut(s)	406, 419, 584
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	127, 629
SmoI	CTYRAG	2 cut(s)	127, 629
Sse9I	AATT	5 cut(s)	387, 461, 664, 803, 1008
SsiI	CCGC	4 cut(s)	314, 347, 395, 557
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	413, 795, 810
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	115, 604, 776, 943
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	435, 647
TasI	AATT	5 cut(s)	387, 461, 664, 803, 1008
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	337, 998
Tru1I	TTAA	4 cut(s)	117, 243, 1005, 1018
Tru9I	TTAA	4 cut(s)	117, 243, 1005, 1018
TscAI	CASTG	4 cut(s)	118, 256, 510, 576
TseFI	GTSAC	5 cut(s)	49, 273, 280, 779, 965
TseI	GCWGC	2 cut(s)	344, 518
Tsp45I	GTSAC	5 cut(s)	49, 273, 280, 779, 965
TspDTI	ATGAA	3 cut(s)	58, 66, 951
TspGWI	ACGGA	2 cut(s)	299, 336
TspRI	CASTG	4 cut(s)	118, 256, 510, 576
Van91I	CCANNNNNTGG	1 cut(s)	483
VpaK11BI	GGWCC	3 cut(s)	406, 419, 584
XapI	RAATTY	3 cut(s)	461, 803, 1008
XceI	RCATGY	1 cut(s)	689
XmiI	GTMKAC	2 cut(s)	435, 720
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.