FvH4_6g28680

Cinnamoyl-CoA reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
22124136 .. 22129346
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28680.t2

Sequence Viewer

Length: 1020 bp
ATGCCTGCTGATCACAGCTCTTCACTTTCCGGCCATGGCCAAACTGTGTGTGTCACCGGAGCCGGAGGCTTCATCGCTTCTTGGTTGGTGAAGCTCCTGCTGGATAGAGGCTATAATGTGAGAGGAACCGTCAGAAACCCAGAGGACCCAAAGAATGCTCATCTGAGGGAGCTGGAAGGAGCCAAAGAGAGGCTGAGCTTGCGGAAAGCCGATCTTCTGGATTTCGAGAGCCTGAAAGAAGCCATTAACGGCTGTGATGGCGTTTTCCACACTGCATCGCCTGTAACTGATGATCCGGAACAAATGGTGGAACCGGCAGTGAATGGAACAAAGAATGTGATCGTTGCCGCTGCTGAAGCCAAGGTTAAACGCGTCGTCTTCACGTCTTCAATCGGTGCCGTCTACATGGACCCAGCCCGAGGTCCCGATGTCGTTGTCGACGAGTCTTGTTGGAGTGACCTCGAGTTTTGCAAGAACACCAAGAACTGGTACTGCTACGGCAAAGCTGTGGCGGAGCAAGCAGCGTGGGAAGAGGCCAAAGAGAGAGGAGTGGACTTGGTGGTGGTGAACCCAGTTCTGGTGCTTGGACCACTGCTCCAACCCACCATCAACGCCAGCATCATCCACATCCTCAAGTACTTGACTGGCTCGGCCAAGACTTATGCCAATTCTGTTCAGGCCTATGTGCATGTCAAGGATGTGGCATTAGCACACATACTGGTGTACGAAACTCCCTCGGCATCTGGCCGTTATCTCTGCGCCGAGAGCGTCCTTCACCGTGGAGATGTGGTCGAAATCCTCGCCAAGTTCTTCCCTGAATACCCCATACCCAGCAAGTTGAAAGATGATGGGAAACCCAGAGCAATACCCTACAAGTTTTCAAACCAGAAGCTACAAGACTTGGGTTTGGAGTTCACTTCTGTGAAACAGAGCCTATATGACACTGTCAAGAGCTTGCAGGAGAAGGGTCACCTTAAGGTTCCTACAAAGCAAGAAGAAGACTCCATCAAGATCCAATAA

Protein Analysis

340

Amino Acids

37.19

Weight (kDa)

6.17

Isoelectric Point (pI)

34.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 14 - 134 4.2e-14 NmrA-like family
Epimerase PF01370 16 - 248 2e-29 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 16 - 135 1.5e-07 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 18 - 241 8.1e-22 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 18 - 264 7.8e-14 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 18 - 200 1.6e-11 Male sterility protein
NAD_binding_10 PF13460 20 - 136 2.2e-19 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 486
AccI GTMKAC 2 cut(s) 402, 438
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 3 cut(s) 202, 348, 512
AclWI GGATC 2 cut(s) 287, 1006
AcoI YGGCCR 4 cut(s) 31, 37, 651, 745
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 3 cut(s) 491, 638, 725
AfiI CCNNNNNNNGG 4 cut(s) 189, 419, 486, 577
AflII CTTAAG 1 cut(s) 974
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 3 cut(s) 390, 841, 882
AjiI CACGTC 1 cut(s) 384
AleI CACNNNNGTG 1 cut(s) 920
AluBI AGCT 7 cut(s) 18, 94, 172, 198, 506, 892, 954
AluI AGCT 7 cut(s) 18, 94, 172, 198, 506, 892, 954
AlwI GGATC 2 cut(s) 287, 1006
Ama87I CYCGRG 2 cut(s) 417, 461
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 6 cut(s) 31, 37, 534, 651, 678, 745
ApeKI GCWGC 2 cut(s) 350, 521
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 4 cut(s) 145, 409, 422, 587
AsuHPI GGTGA 5 cut(s) 46, 100, 577, 767, 962
AvaI CYCGRG 2 cut(s) 417, 461
AvaII GGWCC 4 cut(s) 145, 409, 422, 587
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 370, 378, 1005
BbvI GCAGC 2 cut(s) 337, 533
BccI CCATC 4 cut(s) 251, 614, 842, 1013
BceAI ACGGC 4 cut(s) 265, 383, 514, 732
BclI TGATCA 1 cut(s) 10
BfrI CTTAAG 1 cut(s) 974
BisI GCNGC 3 cut(s) 348, 351, 522
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 3 cut(s) 349, 352, 523
BmcAI AGTACT 1 cut(s) 638
Bme18I GGWCC 4 cut(s) 145, 409, 422, 587
BmeT110I CYCGRG 2 cut(s) 417, 461
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 4 cut(s) 145, 409, 422, 587
BmiI GGNNCC 9 cut(s) 61, 127, 147, 181, 312, 397, 411, 424, 981
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 3 cut(s) 284, 627, 749
BmuI ACTGGG 1 cut(s) 566
BpiI GAAGAC 3 cut(s) 370, 378, 1005
Bpu1102I GCTNAGC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 617
BsaJI CCNNGG 5 cut(s) 34, 360, 418, 735, 778
BsaWI WCCGGW 2 cut(s) 56, 295
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 774, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 419, 486, 577
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 491, 572, 649, 723
BseAI TCCGGA 1 cut(s) 295
BseDI CCNNGG 5 cut(s) 34, 360, 418, 735, 778
BseGI GGATG 3 cut(s) 621, 627, 703
BseLI CCNNNNNNNGG 4 cut(s) 189, 419, 486, 577
BseMII CTCAG 2 cut(s) 155, 185
BseNI ACTGG 4 cut(s) 491, 572, 649, 723
BseRI GAGGAG 1 cut(s) 561
BseXI GCAGC 2 cut(s) 337, 533
BseYI CCCAGC 2 cut(s) 412, 830
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 6 cut(s) 33, 39, 536, 653, 680, 747
BshNI GGYRCC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 417, 461
BsiSI CCGG 5 cut(s) 30, 57, 63, 296, 314
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 4 cut(s) 189, 419, 486, 577
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 6 cut(s) 33, 39, 536, 653, 680, 747
BsoBI CYCGRG 2 cut(s) 417, 461
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 5 cut(s) 10, 211, 292, 339, 1011
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 3 cut(s) 202, 348, 512
BspANI GGCC 6 cut(s) 33, 39, 536, 653, 680, 747
BspCNI CTCAG 2 cut(s) 156, 186
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 1 cut(s) 372
BspLI GGNNCC 9 cut(s) 61, 127, 147, 181, 312, 397, 411, 424, 981
BspPI GGATC 2 cut(s) 287, 1006
BspQI GCTCTTC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 395
BspTI CTTAAG 1 cut(s) 974
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 4 cut(s) 491, 572, 649, 723
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 5 cut(s) 34, 360, 418, 735, 778
BssMI GATC 5 cut(s) 10, 211, 292, 339, 1011
BssT1I CCWWGG 2 cut(s) 34, 360
Bst4CI ACNGT 4 cut(s) 46, 130, 779, 946
Bst6I CTCTTC 2 cut(s) 25, 525
BstAFI CTTAAG 1 cut(s) 974
BstC8I GCNNGC 5 cut(s) 6, 200, 519, 616, 956
BstDEI CTNAG 2 cut(s) 164, 194
BstDSI CCRYGG 2 cut(s) 34, 778
BstEII GGTNACC 1 cut(s) 968
BstF5I GGATG 3 cut(s) 621, 627, 703
BstFNI CGCG 1 cut(s) 372
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 5 cut(s) 13, 214, 295, 342, 1014
BstMBI GATC 5 cut(s) 10, 211, 292, 339, 1011
BstMWI GCNNNNNNNGC 5 cut(s) 199, 258, 356, 518, 765
BstNSI RCATGY 1 cut(s) 692
BstPI GGTNACC 1 cut(s) 968
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 337, 533
BstV2I GAAGAC 3 cut(s) 370, 378, 1005
BstX2I RGATCY 1 cut(s) 1011
BstYI RGATCY 1 cut(s) 1011
BsuRI GGCC 6 cut(s) 33, 39, 536, 653, 680, 747
BtgI CCRYGG 2 cut(s) 34, 778
BtgZI GCGATG 2 cut(s) 58, 261
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 621, 627, 703
BtsI GCAGTG 3 cut(s) 270, 324, 590
BtsIMutI CAGTG 4 cut(s) 270, 324, 590, 942
Cac8I GCNNGC 5 cut(s) 6, 200, 519, 616, 956
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 4 cut(s) 145, 409, 422, 587
CseI GACGC 2 cut(s) 361, 757
Csp6I GTAC 3 cut(s) 490, 637, 724
CspCI CAANNNNNGTGG 2 cut(s) 506, 541
CviAII CATG 3 cut(s) 35, 406, 689
CviQI GTAC 3 cut(s) 490, 637, 724
DdeI CTNAG 2 cut(s) 164, 194
DpnI GATC 5 cut(s) 12, 213, 294, 341, 1013
DpnII GATC 5 cut(s) 10, 211, 292, 339, 1011
EaeI YGGCCR 4 cut(s) 31, 37, 651, 745
Eam1104I CTCTTC 2 cut(s) 25, 525
EarI CTCTTC 2 cut(s) 25, 525
EciI GGCGGA 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 34, 360
Eco147I AGGCCT 1 cut(s) 680
Eco47I GGWCC 4 cut(s) 145, 409, 422, 587
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 2 cut(s) 417, 461
Eco91I GGTNACC 1 cut(s) 968
EcoO109I RGGNCCY 2 cut(s) 145, 422
EcoO65I GGTNACC 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 34, 360
ErhI CCWWGG 2 cut(s) 34, 360
FaeI CATG 3 cut(s) 38, 409, 692
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 408
FatI CATG 3 cut(s) 34, 405, 688
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 2 cut(s) 402, 438
Fnu4HI GCNGC 3 cut(s) 348, 351, 522
FokI GGATG 3 cut(s) 608, 614, 710
Fsp4HI GCNGC 3 cut(s) 348, 351, 522
GlaI GCGC 1 cut(s) 760
GluI GCNGC 3 cut(s) 348, 351, 522
GsaI CCCAGC 2 cut(s) 416, 834
HaeIII GGCC 6 cut(s) 33, 39, 536, 653, 680, 747
HapII CCGG 5 cut(s) 30, 57, 63, 296, 314
HgaI GACGC 2 cut(s) 361, 757
HhaI GCGC 1 cut(s) 761
Hin1II CATG 3 cut(s) 38, 409, 692
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 2 cut(s) 443, 1001
HpaII CCGG 5 cut(s) 30, 57, 63, 296, 314
HphI GGTGA 5 cut(s) 46, 100, 577, 767, 962
Hpy166II GTNNAC 6 cut(s) 403, 439, 553, 568, 724, 915
Hpy188I TCNGA 2 cut(s) 134, 165
Hpy188III TCNNGA 6 cut(s) 218, 226, 296, 425, 949, 1009
Hpy8I GTNNAC 6 cut(s) 403, 439, 553, 568, 724, 915
Hpy99I CGWCG 2 cut(s) 377, 443
HpyAV CCTTC 3 cut(s) 170, 782, 958
HpyCH4III ACNGT 4 cut(s) 46, 130, 779, 946
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 4 cut(s) 275, 471, 688, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 258, 356, 518, 765
HpyF3I CTNAG 2 cut(s) 164, 194
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 3 cut(s) 38, 409, 692
HspAI GCGC 1 cut(s) 759
Kpn2I TCCGGA 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 5 cut(s) 10, 211, 292, 339, 1011
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 6 cut(s) 59, 99, 169, 179, 514, 600
Lsp1109I GCAGC 2 cut(s) 337, 533
LweI GCATC 3 cut(s) 284, 627, 749
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 4 cut(s) 52, 283, 455, 968
MalI GATC 5 cut(s) 12, 213, 294, 341, 1013
MboI GATC 5 cut(s) 10, 211, 292, 339, 1011
MboII GAAGA 8 cut(s) 12, 206, 370, 378, 542, 802, 1007, 1010
MflI RGATCY 1 cut(s) 1011
MlsI TGGCCA 1 cut(s) 39
MluCI AATT 1 cut(s) 667
MluI ACGCGT 1 cut(s) 370
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 2 cut(s) 452, 995
MmeI TCCRAC 2 cut(s) 431, 622
Mox20I TGGCCA 1 cut(s) 39
MroI TCCGGA 1 cut(s) 295
MscI TGGCCA 1 cut(s) 39
MseI TTAA 3 cut(s) 246, 366, 975
MslI CAYNNNNRTG 2 cut(s) 719, 920
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 350
MspCI CTTAAG 1 cut(s) 974
MspI CCGG 5 cut(s) 30, 57, 63, 296, 314
Mva1269I GAATGC 1 cut(s) 160
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 5 cut(s) 199, 258, 356, 518, 765
NcoI CCATGG 1 cut(s) 34
NdeII GATC 5 cut(s) 10, 211, 292, 339, 1011
NlaIII CATG 3 cut(s) 38, 409, 692
NlaIV GGNNCC 9 cut(s) 61, 127, 147, 181, 312, 397, 411, 424, 981
NmeAIII GCCGAG 3 cut(s) 629, 716, 787
NmuCI GTSAC 3 cut(s) 52, 455, 968
NspI RCATGY 1 cut(s) 692
OliI CACNNNNGTG 1 cut(s) 920
PaeR7I CTCGAG 1 cut(s) 461
PceI AGGCCT 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 944
PflMI CCANNNNNTGG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 349, 352, 523
PleI GAGTC 2 cut(s) 451, 995
PpsI GAGTC 2 cut(s) 451, 995
PpuMI RGGWCCY 2 cut(s) 145, 422
Psp5II RGGWCCY 2 cut(s) 145, 422
PspEI GGTNACC 1 cut(s) 968
PspFI CCCAGC 2 cut(s) 412, 830
PspN4I GGNNCC 9 cut(s) 61, 127, 147, 181, 312, 397, 411, 424, 981
PspPI GGNCC 4 cut(s) 145, 409, 422, 587
PspPPI RGGWCCY 2 cut(s) 145, 422
PspXI VCTCGAGB 1 cut(s) 461
PsuI RGATCY 1 cut(s) 1011
PsyI GACNNNGTC 1 cut(s) 944
RsaI GTAC 3 cut(s) 491, 638, 725
RsaNI GTAC 3 cut(s) 490, 637, 724
RseI CAYNNNNRTG 2 cut(s) 719, 920
SalI GTCGAC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 246, 366, 975
SatI GCNGC 3 cut(s) 348, 351, 522
Sau3AI GATC 5 cut(s) 10, 211, 292, 339, 1011
Sau96I GGNCC 4 cut(s) 145, 409, 422, 587
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 2 cut(s) 452, 995
SfaNI GCATC 3 cut(s) 284, 627, 749
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 4 cut(s) 145, 409, 422, 587
SlaI CTCGAG 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 719, 920
SmlI CTYRAG 3 cut(s) 461, 632, 974
SmoI CTYRAG 3 cut(s) 461, 632, 974
Sse9I AATT 1 cut(s) 667
SseBI AGGCCT 1 cut(s) 680
SsiI CCGC 3 cut(s) 202, 348, 512
StuI AGGCCT 1 cut(s) 680
StyI CCWWGG 2 cut(s) 34, 360
TaaI ACNGT 4 cut(s) 46, 130, 779, 946
TaiI ACGT 1 cut(s) 386
TaqI TCGA 4 cut(s) 225, 438, 462, 792
TasI AATT 1 cut(s) 667
TatI WGTACW 1 cut(s) 636
TauI GCSGC 1 cut(s) 350
Tru1I TTAA 3 cut(s) 246, 366, 975
Tru9I TTAA 3 cut(s) 246, 366, 975
TscAI CASTG 4 cut(s) 277, 324, 597, 949
TseFI GTSAC 3 cut(s) 52, 455, 968
TseI GCWGC 2 cut(s) 350, 521
Tsp45I GTSAC 3 cut(s) 52, 455, 968
TspDTI ATGAA 1 cut(s) 61
TspRI CASTG 4 cut(s) 277, 324, 597, 949
Tth111I GACNNNGTC 1 cut(s) 944
Van91I CCANNNNNTGG 1 cut(s) 486
Vha464I CTTAAG 1 cut(s) 974
VpaK11BI GGWCC 4 cut(s) 145, 409, 422, 587
XceI RCATGY 1 cut(s) 692
XhoI CTCGAG 1 cut(s) 461
XmiI GTMKAC 2 cut(s) 402, 438
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.