AT1G80820

Cinnamoyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002169
Physical Location & Seq
Forward (+)
30370474 .. 30372799
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80820.1

Sequence Viewer

Length: 999 bp
ATGCTTGTCGACGGGAAACTCGTCTGCGTCACCGGAGCCGGCGGCTACATTGCTTCTTGGATCGTTAAGTTACTCTTAGAGAGAGGCTACACCGTTAGAGGAACCGTAAGGAACCCAACTGATCCCAAGAACAACCATCTCAGAGAGCTTCAAGGAGCCAAGGAAAGACTCACTCTTCACAGTGCAGATCTTCTCGACTACGAAGCTCTCTGTGCCACAATCGACGGTTGCGATGGCGTTTTCCACACTGCCTCTCCGATGACCGACGATCCCGAGACAATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCAGCGGCTAAAGCCAAGGTCAAGCGCGTGGTTTTCACGTCATCAATTGGTGCAGTTTACATGAACCCTAACCGTGACACTCAAGCCATTGTTGACGAAAACTGCTGGAGTGATCTTGATTTCTGCAAAAACACTAAGAATTGGTATTGCTACGGGAAGATGTTGGCGGAACAATCGGCATGGGAGACGGCCAAAGCAAAAGGTGTGGACTTAGTGGTGCTAAATCCGGTTTTGGTTCTCGGACCACCGCTCCAGTCAGCGATCAACGCTAGTCTAGTCCATATTCTCAAGTACCTCACCGGCTCAGCCAAGACCTACGCTAACTTGACTCAGGTCTACGTGGACGTCCGTGACGTGGCACTAGGCCATGTTCTGGTCTACGAAGCACCCTCCGCCTCAGGCCGTTACATCCTCGCCGAGACCGCACTTCACCGCGGAGAGGTTGTTGAGATTCTGGCCAAATTCTTCCCGGAGTATCCACTTCCCACCAAGTGTTCGGACGAGAAGAATCCGAGGGCTAAGCCATACAAGTTTACTACCCAAAAGATAAAAGACTTAGGCTTGGAATTTAAACCCATCAAGCAATCTCTTTACGAATCTGTCAAGAGCTTGCAAGAGAAAGGCCATCTTCCTCTACCTCAAGATTCGAACCAAAACGAAGTCATCATCGAATCTTAG

Protein Analysis

332

Amino Acids

36.62

Weight (kDa)

6.4

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 123 4.4e-13 NmrA-like family
Epimerase PF01370 8 - 240 5.2e-26 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 10 - 233 3.7e-18 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 131 2.8e-11 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 199 2.7e-09 Male sterility protein
NAD_binding_10 PF13460 12 - 128 1.7e-16 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 694
AccBSI CCGCTC 1 cut(s) 571
AccI GTMKAC 3 cut(s) 9, 657, 699
AccII CGCG 2 cut(s) 348, 756
AciI CCGC 9 cut(s) 42, 293, 326, 488, 569, 714, 744, 754, 756
AclWI GGATC 3 cut(s) 68, 116, 263
AcoI YGGCCR 2 cut(s) 510, 777
AcsI RAATTY 2 cut(s) 782, 887
AcyI GRCGYC 1 cut(s) 666
AdeI CACNNNGTG 1 cut(s) 813
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 3 cut(s) 676, 694, 760
AgsI TTSAA 1 cut(s) 152
AjiI CACGTC 2 cut(s) 360, 676
AluBI AGCT 3 cut(s) 148, 206, 930
AluI AGCT 3 cut(s) 148, 206, 930
Alw26I GTCTC 3 cut(s) 269, 500, 734
AlwI GGATC 3 cut(s) 68, 116, 263
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 5 cut(s) 510, 685, 721, 777, 943
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 782, 887
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 22, 307, 610, 743
AsuII TTCGAA 1 cut(s) 968
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 718
BalI TGGCCA 1 cut(s) 779
BbvI GCAGC 1 cut(s) 335
BccI CCATC 4 cut(s) 144, 227, 905, 954
BceAI ACGGC 2 cut(s) 525, 708
BciVI GTATCC 1 cut(s) 807
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 3 cut(s) 269, 500, 734
BfaI CTAG 3 cut(s) 591, 596, 683
BfuI GTATCC 1 cut(s) 807
BglII AGATCT 1 cut(s) 187
BisI GCNGC 3 cut(s) 43, 324, 327
BlpI GCTNAGC 2 cut(s) 625, 840
BlsI GCNGC 3 cut(s) 44, 325, 328
Bme1390I CCNGG 1 cut(s) 791
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 2 cut(s) 360, 676
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 6 cut(s) 37, 103, 113, 157, 288, 304
BmrFI CCNGG 1 cut(s) 791
BoxI GACNNNNGTC 1 cut(s) 653
BpmI CTGGAG 2 cut(s) 448, 557
Bpu1102I GCTNAGC 2 cut(s) 625, 840
Bpu14I TTCGAA 1 cut(s) 968
BpuEI CTTGAG 3 cut(s) 387, 593, 945
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 661
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 734
BsaJI CCNNGG 4 cut(s) 159, 336, 754, 833
BsaWI WCCGGW 2 cut(s) 32, 547
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 555, 585, 750, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 676, 694, 760
Bse118I RCCGGY 3 cut(s) 38, 289, 620
Bse1I ACTGG 1 cut(s) 574
Bse21I CCTNAGG 1 cut(s) 718
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 4 cut(s) 159, 336, 754, 833
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 3 cut(s) 676, 694, 760
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 4 cut(s) 154, 639, 665, 732
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 2 cut(s) 204, 393
Bsh1236I CGCG 2 cut(s) 348, 756
BshFI GGCC 5 cut(s) 512, 687, 723, 779, 945
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 6 cut(s) 33, 39, 290, 548, 621, 791
BslI CCNNNNNNNGG 3 cut(s) 676, 694, 760
BsmAI GTCTC 3 cut(s) 269, 500, 734
BsmBI CGTCTC 1 cut(s) 500
BsnI GGCC 5 cut(s) 512, 687, 723, 779, 945
Bso31I GGTCTC 1 cut(s) 734
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 968
Bsp143I GATC 6 cut(s) 60, 121, 187, 268, 433, 582
Bsp1720I GCTNAGC 2 cut(s) 625, 840
BspACI CCGC 9 cut(s) 42, 293, 326, 488, 569, 714, 744, 754, 756
BspANI GGCC 5 cut(s) 512, 687, 723, 779, 945
BspCNI CTCAG 4 cut(s) 153, 638, 664, 731
BspFNI CGCG 2 cut(s) 348, 756
BspLI GGNNCC 6 cut(s) 37, 103, 113, 157, 288, 304
BspPI GGATC 3 cut(s) 68, 116, 263
BspT104I TTCGAA 1 cut(s) 968
BspTNI GGTCTC 1 cut(s) 734
BsrBI CCGCTC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 3 cut(s) 38, 289, 620
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 3 cut(s) 38, 289, 620
BssECI CCNNGG 4 cut(s) 159, 336, 754, 833
BssMI GATC 6 cut(s) 60, 121, 187, 268, 433, 582
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 2 cut(s) 159, 336
Bst4CI ACNGT 5 cut(s) 94, 106, 182, 227, 395
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 666
BstBAI YACGTR 1 cut(s) 661
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 3 cut(s) 40, 291, 932
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 2 cut(s) 348, 756
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 6 cut(s) 63, 124, 190, 271, 436, 585
BstMAI GTCTC 3 cut(s) 269, 500, 734
BstMBI GATC 6 cut(s) 60, 121, 187, 268, 433, 582
BstMWI GCNNNNNNNGC 5 cut(s) 212, 332, 587, 713, 743
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 1 cut(s) 789
BstUI CGCG 2 cut(s) 348, 756
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 718
BsuI GTATCC 1 cut(s) 807
BsuRI GGCC 5 cut(s) 512, 687, 723, 779, 945
BtgI CCRYGG 1 cut(s) 754
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 2 cut(s) 360, 676
BtsCI GGATG 1 cut(s) 729
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 187, 246
Cac8I GCNNGC 3 cut(s) 40, 291, 932
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 3 cut(s) 38, 289, 620
Cfr13I GGNCC 1 cut(s) 563
Cfr42I CCGCGG 1 cut(s) 757
CseI GACGC 2 cut(s) 16, 329
Csp6I GTAC 1 cut(s) 613
CspCI CAANNNNNGTGG 2 cut(s) 507, 542
CviAII CATG 3 cut(s) 382, 501, 689
CviQI GTAC 1 cut(s) 613
DpnI GATC 6 cut(s) 62, 123, 189, 270, 435, 584
DpnII GATC 6 cut(s) 60, 121, 187, 268, 433, 582
DraI TTTAAA 1 cut(s) 892
DraIII CACNNNGTG 1 cut(s) 813
EaeI YGGCCR 2 cut(s) 510, 777
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 2 cut(s) 503, 703
Eco130I CCWWGG 2 cut(s) 159, 336
Eco31I GGTCTC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 563
Eco81I CCTNAGG 1 cut(s) 718
Eco88I CYCGRG 1 cut(s) 272
EcoT14I CCWWGG 2 cut(s) 159, 336
ErhI CCWWGG 2 cut(s) 159, 336
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 3 cut(s) 385, 504, 692
FaiI YATR 5 cut(s) 383, 502, 603, 690, 847
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 933, 965
FatI CATG 3 cut(s) 381, 500, 688
FblI GTMKAC 3 cut(s) 9, 657, 699
Fnu4HI GCNGC 3 cut(s) 43, 324, 327
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 3 cut(s) 43, 324, 327
FspBI CTAG 3 cut(s) 591, 596, 683
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 43, 324, 327
GsuI CTGGAG 2 cut(s) 448, 557
HaeIII GGCC 5 cut(s) 512, 687, 723, 779, 945
HapII CCGG 6 cut(s) 33, 39, 290, 548, 621, 791
HgaI GACGC 2 cut(s) 16, 329
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 3 cut(s) 385, 504, 692
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HincII GTYRAC 2 cut(s) 10, 415
HindII GTYRAC 2 cut(s) 10, 415
HinfI GANTC 7 cut(s) 168, 649, 772, 829, 917, 965, 992
HpaII CCGG 6 cut(s) 33, 39, 290, 548, 621, 791
HphI GGTGA 4 cut(s) 22, 307, 610, 743
Hpy166II GTNNAC 9 cut(s) 10, 298, 379, 415, 529, 658, 664, 700, 855
Hpy188I TCNGA 5 cut(s) 143, 258, 563, 820, 834
Hpy188III TCNNGA 6 cut(s) 194, 272, 313, 437, 925, 962
Hpy8I GTNNAC 9 cut(s) 10, 298, 379, 415, 529, 658, 664, 700, 855
Hpy99I CGWCG 3 cut(s) 14, 227, 269
HpyCH4III ACNGT 5 cut(s) 94, 106, 182, 227, 395
HpyCH4IV ACGT 4 cut(s) 359, 660, 666, 675
HpyCH4V TGCA 4 cut(s) 185, 374, 447, 934
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 332, 587, 713, 743
HpySE526I ACGT 4 cut(s) 359, 660, 666, 675
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 3 cut(s) 385, 504, 692
HspAI GCGC 1 cut(s) 346
KroI GCCGGC 2 cut(s) 38, 289
KroNI GCCGGC 2 cut(s) 40, 291
KspI CCGCGG 1 cut(s) 757
Kzo9I GATC 6 cut(s) 60, 121, 187, 268, 433, 582
LmnI GCTCC 5 cut(s) 35, 155, 286, 302, 576
Lsp1109I GCAGC 1 cut(s) 335
MaeI CTAG 3 cut(s) 591, 596, 683
MaeII ACGT 4 cut(s) 359, 660, 666, 675
MaeIII GTNAC 5 cut(s) 28, 69, 395, 671, 725
MalI GATC 6 cut(s) 62, 123, 189, 270, 435, 584
MbiI CCGCTC 1 cut(s) 571
MboI GATC 6 cut(s) 60, 121, 187, 268, 433, 582
MboII GAAGA 6 cut(s) 167, 182, 490, 778, 838, 941
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 4 cut(s) 366, 460, 782, 887
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 2 cut(s) 162, 643
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 779
MroNI GCCGGC 2 cut(s) 38, 289
MscI TGGCCA 1 cut(s) 779
MseI TTAA 2 cut(s) 66, 891
Msp20I TGGCCA 1 cut(s) 779
MspA1I CMGCKG 2 cut(s) 326, 756
MspI CCGG 6 cut(s) 33, 39, 290, 548, 621, 791
MspR9I CCNGG 1 cut(s) 791
MunI CAATTG 1 cut(s) 366
MvnI CGCG 2 cut(s) 348, 756
MwoI GCNNNNNNNGC 5 cut(s) 212, 332, 587, 713, 743
NaeI GCCGGC 2 cut(s) 40, 291
NciI CCSGG 1 cut(s) 791
NdeII GATC 6 cut(s) 60, 121, 187, 268, 433, 582
NgoMIV GCCGGC 2 cut(s) 38, 289
NlaIII CATG 3 cut(s) 385, 504, 692
NlaIV GGNNCC 6 cut(s) 37, 103, 113, 157, 288, 304
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 3 cut(s) 28, 395, 671
NspV TTCGAA 1 cut(s) 968
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 228, 672
PdiI GCCGGC 2 cut(s) 40, 291
PfeI GAWTC 5 cut(s) 772, 829, 917, 965, 992
PflMI CCANNNNNTGG 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 789
PkrI GCNGC 3 cut(s) 44, 325, 328
PleI GAGTC 2 cut(s) 162, 643
PpsI GAGTC 2 cut(s) 162, 643
Ppu21I YACGTR 1 cut(s) 661
PshAI GACNNNNGTC 1 cut(s) 653
PspN4I GGNNCC 6 cut(s) 37, 103, 113, 157, 288, 304
PspPI GGNCC 1 cut(s) 563
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
SacII CCGCGG 1 cut(s) 757
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 66, 891
SatI GCNGC 3 cut(s) 43, 324, 327
Sau3AI GATC 6 cut(s) 60, 121, 187, 268, 433, 582
Sau96I GGNCC 1 cut(s) 563
SchI GAGTC 2 cut(s) 162, 643
ScrFI CCNGG 1 cut(s) 791
Sfr303I CCGCGG 1 cut(s) 757
SfuI TTCGAA 1 cut(s) 968
SgrBI CCGCGG 1 cut(s) 757
SinI GGWCC 1 cut(s) 563
SmlI CTYRAG 3 cut(s) 402, 608, 960
SmoI CTYRAG 3 cut(s) 402, 608, 960
Sse9I AATT 4 cut(s) 366, 460, 782, 887
SsiI CCGC 9 cut(s) 42, 293, 326, 488, 569, 714, 744, 754, 756
SspMI CTAG 3 cut(s) 591, 596, 683
StyD4I CCNGG 1 cut(s) 789
StyI CCWWGG 2 cut(s) 159, 336
TaaI ACNGT 5 cut(s) 94, 106, 182, 227, 395
TaiI ACGT 4 cut(s) 362, 663, 669, 678
TaqI TCGA 5 cut(s) 9, 195, 222, 968, 990
TaqII GACCGA 1 cut(s) 278
TasI AATT 4 cut(s) 366, 460, 782, 887
TauI GCSGC 2 cut(s) 45, 329
TfiI GAWTC 5 cut(s) 772, 829, 917, 965, 992
Tru1I TTAA 2 cut(s) 66, 891
Tru9I TTAA 2 cut(s) 66, 891
TscAI CASTG 2 cut(s) 187, 253
TseFI GTSAC 3 cut(s) 28, 395, 671
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 3 cut(s) 28, 395, 671
TspDTI ATGAA 1 cut(s) 398
TspGWI ACGGA 2 cut(s) 315, 659
TspRI CASTG 2 cut(s) 187, 253
Van91I CCANNNNNTGG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 2 cut(s) 782, 887
XmiI GTMKAC 3 cut(s) 9, 657, 699
XspI CTAG 3 cut(s) 591, 596, 683
ZraI GACGTC 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.