Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Reverse (-)

50046104 .. 50048791

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGGAGCCGGCAGTGAATGGAACAAAGAACGTGATTGTTGCCGCTTCTGAAGCCAAGGTTAAACGCGTGGTCTTCACGTCTTCAATCGGTGCCGTGTACATGGACCCGAGCAGAGGTCCCGATAACTGGTACTGCTATGGGAAAGCTGTGGCGGAGCAAGCAGCGTGGGATGAGGCCAAAGAGAAAGGAGTAGATTTGGTGGTGGTGAACCCAGTTTTGGTGCTTGGACCACTGCTCCAACCAACCATCAACGCCAGCATTATCCACGTCCTCAAGTACTTGACTGGCTCGGCCAAGACTTATGCCAATTCTGTTCAGGCCTATGTGCATGTTAAGGACGTGGCATTAGCACACATACTGGTGTATGAAACTCCCTCGGCATCTGGCCGTTATCTTTGCGCCGAGAGCGTCCTTCACCGTGGAGATGTAGTTGACATCCTCGCCAAGTTCTTCCCTGAATACCCGATACCCACCAAGTTGAAAGATGATGGGAAACCCAGAGCAATACCCTACAAGTTCTCAAATCAGAAGCTACAAGACTTGGGTTTGGAGTTCACTCCAGTGAAACAGAGCCTATATGATACTGTCAAGAGCTTGCAGGAGAAGGGTCACCTTAAAGTTCCTACAAAACAAGAAGAAGACTCCATTAAGATCCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

222

Amino Acids

24.28

Weight (kDa)

8.35

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	5 - 129	1.1e-10	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	5 - 122	4.8e-06	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	45, 155
AclWI	GGATC	1 cut(s)	649
AcoI	YGGCCR	2 cut(s)	294, 388
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	3 cut(s)	101, 134, 281
AfiI	CCNNNNNNNGG	3 cut(s)	116, 129, 220
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	87, 484
AjiI	CACGTC	3 cut(s)	81, 271, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	3 cut(s)	149, 535, 597
AluI	AGCT	3 cut(s)	149, 535, 597
AlwI	GGATC	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	4 cut(s)	177, 294, 321, 388
ApeKI	GCWGC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	106, 119, 230
AsuHPI	GGTGA	3 cut(s)	220, 410, 605
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	106, 119, 230
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	3 cut(s)	67, 75, 648
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	2 cut(s)	257, 485
BceAI	ACGGC	2 cut(s)	80, 375
BisI	GCNGC	2 cut(s)	45, 165
BlsI	GCNGC	2 cut(s)	46, 166
BmcAI	AGTACT	1 cut(s)	281
Bme18I	GGWCC	3 cut(s)	106, 119, 230
BmeT110I	CYCGRG	1 cut(s)	109
BmgBI	CACGTC	3 cut(s)	81, 271, 343
BmgT120I	GGNCC	3 cut(s)	106, 119, 230
BmiI	GGNNCC	4 cut(s)	9, 94, 108, 121
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	3 cut(s)	67, 75, 648
BpmI	CTGGAG	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	3 cut(s)	57, 378, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 129, 220
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	5 cut(s)	134, 215, 292, 366, 563
BseDI	CCNNGG	3 cut(s)	57, 378, 421
BseGI	GGATG	2 cut(s)	178, 438
BseLI	CCNNNNNNNGG	3 cut(s)	116, 129, 220
BseNI	ACTGG	5 cut(s)	134, 215, 292, 366, 563
BseXI	GCAGC	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	179, 296, 323, 390
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	116, 129, 220
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	4 cut(s)	179, 296, 323, 390
BsoBI	CYCGRG	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	654
BspACI	CCGC	2 cut(s)	45, 155
BspANI	GGCC	4 cut(s)	179, 296, 323, 390
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	9, 94, 108, 121
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	5 cut(s)	134, 215, 292, 366, 563
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	57, 378, 421
BssMI	GATC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	422, 589
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	12, 162, 259, 599
BstDSI	CCRYGG	1 cut(s)	421
BstEII	GGTNACC	1 cut(s)	611
BstF5I	GGATG	2 cut(s)	178, 438
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	657
BstMBI	GATC	1 cut(s)	654
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 161, 408
BstNSI	RCATGY	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	611
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	3 cut(s)	67, 75, 648
BstX2I	RGATCY	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	179, 296, 323, 390
BtgI	CCRYGG	1 cut(s)	421
BtrI	CACGTC	3 cut(s)	81, 271, 343
BtsCI	GGATG	2 cut(s)	178, 438
BtsI	GCAGTG	2 cut(s)	21, 233
BtsIMutI	CAGTG	3 cut(s)	21, 233, 570
Cac8I	GCNNGC	4 cut(s)	12, 162, 259, 599
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	106, 119, 230
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	100, 133, 280
CspCI	CAANNNNNGTGG	2 cut(s)	149, 184
CviAII	CATG	2 cut(s)	103, 332
CviQI	GTAC	3 cut(s)	100, 133, 280
DpnI	GATC	1 cut(s)	656
DpnII	GATC	1 cut(s)	654
EaeI	YGGCCR	2 cut(s)	294, 388
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	106, 119, 230
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	106, 335
FaiI	YATR	9 cut(s)	104, 141, 306, 327, 333, 359, 369, 580, 582
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	102, 331
Fnu4HI	GCNGC	2 cut(s)	45, 165
FokI	GGATG	2 cut(s)	185, 425
Fsp4HI	GCNGC	2 cut(s)	45, 165
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	45, 165
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	4 cut(s)	179, 296, 323, 390
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	106, 335
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	644
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	220, 410, 605
Hpy166II	GTNNAC	4 cut(s)	100, 211, 436, 558
Hpy188I	TCNGA	2 cut(s)	52, 531
Hpy188III	TCNNGA	2 cut(s)	122, 592
Hpy8I	GTNNAC	4 cut(s)	100, 211, 436, 558
HpyAV	CCTTC	2 cut(s)	425, 601
HpyCH4III	ACNGT	2 cut(s)	422, 589
HpyCH4IV	ACGT	4 cut(s)	33, 80, 270, 342
HpyCH4V	TGCA	2 cut(s)	331, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 161, 408
HpySE526I	ACGT	4 cut(s)	33, 80, 270, 342
Hsp92II	CATG	2 cut(s)	106, 335
HspAI	GCGC	1 cut(s)	402
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	654
LmnI	GCTCC	3 cut(s)	7, 157, 243
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	392
MaeII	ACGT	4 cut(s)	33, 80, 270, 342
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	1 cut(s)	656
MboI	GATC	1 cut(s)	654
MboII	GAAGA	5 cut(s)	67, 75, 445, 650, 653
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	1 cut(s)	310
MluI	ACGCGT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	110, 169, 284, 388, 452
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	5 cut(s)	63, 336, 618, 651, 664
MslI	CAYNNNNRTG	2 cut(s)	362, 563
MspI	CCGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	53, 161, 408
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	654
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	106, 335
NlaIV	GGNNCC	4 cut(s)	9, 94, 108, 121
NmeAIII	GCCGAG	3 cut(s)	272, 359, 430
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	335
OliI	CACNNNNGTG	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	46, 166
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
PspEI	GGTNACC	1 cut(s)	611
PspN4I	GGNNCC	4 cut(s)	9, 94, 108, 121
PspPI	GGNCC	3 cut(s)	106, 119, 230
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	3 cut(s)	101, 134, 281
RsaNI	GTAC	3 cut(s)	100, 133, 280
RseI	CAYNNNNRTG	2 cut(s)	362, 563
SaqAI	TTAA	5 cut(s)	63, 336, 618, 651, 664
SatI	GCNGC	2 cut(s)	45, 165
Sau3AI	GATC	1 cut(s)	654
Sau96I	GGNCC	3 cut(s)	106, 119, 230
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	1 cut(s)	638
SfaNI	GCATC	1 cut(s)	392
SinI	GGWCC	3 cut(s)	106, 119, 230
SmiMI	CAYNNNNRTG	2 cut(s)	362, 563
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	310
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	45, 155
StuI	AGGCCT	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	422, 589
TaiI	ACGT	4 cut(s)	36, 83, 273, 345
TasI	AATT	1 cut(s)	310
TatI	WGTACW	2 cut(s)	99, 279
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	5 cut(s)	63, 336, 618, 651, 664
Tru9I	TTAA	5 cut(s)	63, 336, 618, 651, 664
TscAI	CASTG	3 cut(s)	21, 240, 570
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	21, 240, 570
VpaK11BI	GGWCC	3 cut(s)	106, 119, 230
XceI	RCATGY	1 cut(s)	335
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.