Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Reverse (-)

34697801 .. 34705242

Gene Structure 7442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGGAGGCAGAGAGAGGCTGAGCTTGCGAAAAGCCGATCTTCTCGATTTTGGGAGCCTTAAAGATGCCATTACCGGCTGCGATGGCGTTTTCCACACAGCATCCCCTATAACTGATGATCCGGAAGAAATGATGTCGCCGGCGGTGAATGGAACAAAGAATGTCATCGTTGCTGCTTCTGAAGGCAAGGTTAAACGCGTGGTCTTTACATCTTCAATCGGTGCCGTCTACATGGACCCTACCAGAGGTCCTGATATGGTTAACTGGTATTGCTATGGGAAAGCTGTGGCGGAGCAAGCAGCGTGGGATGAGGCCAAAGAAAGAGAAGTGGACTTGGTTGTGGTGAACACAGTTTTGTACTTGACTGGCTCAGCTAAGACTTATGCCAATGCAGTTCAGGCCTATGTGCATGTTGAGGATGTGGCATTGGCACACATATTGGTGTATGAAACTCTCTCTGCCTCTAGCCGTTATCTTTGTGGGGAGAGCGTCCTTCACTGTGGAGATCAATTTGATAAGTGTGTCATATTCGACTTTTGCAGGTTGAAAAATGATGGAAAACCCAGAGCAAAACCATACAAGTTCTCCAACCAGAAGCTACAAGACTTGGGTTTGGAGTTCACCCCAGTGGTACAGAGCCTATATGACACTGTCAAGAGCTTGCAGGACAAGGGGCACCTTAAAGTTCCTACAAAGCAAGAAGAAGACTCCATTCAGATCCAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

244

Amino Acids

26.89

Weight (kDa)

5.3

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	6 - 124	2.7e-10	NAD(P)H-binding
Epimerase	PF01370	7 - 117	1.5e-07	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	11 - 79	2e-09	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccB1I	GGYRCC	2 cut(s)	224, 678
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	146, 293
AclWI	GGATC	2 cut(s)	116, 715
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	362, 636
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	219, 550
AleI	CACNNNNGTG	1 cut(s)	629
AluBI	AGCT	5 cut(s)	27, 287, 377, 601, 663
AluI	AGCT	5 cut(s)	27, 287, 377, 601, 663
AlwI	GGATC	2 cut(s)	116, 715
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	2 cut(s)	315, 402
ApeKI	GCWGC	3 cut(s)	81, 176, 302
AspS9I	GGNCC	2 cut(s)	238, 251
AsuHPI	GGTGA	3 cut(s)	160, 358, 616
AvaII	GGWCC	2 cut(s)	238, 251
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	2 cut(s)	224, 678
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	68, 163, 314
BccI	CCATC	2 cut(s)	80, 551
BceAI	ACGGC	2 cut(s)	212, 456
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	3 cut(s)	82, 177, 303
BlpI	GCTNAGC	2 cut(s)	23, 373
BlsI	GCNGC	3 cut(s)	83, 178, 304
Bme18I	GGWCC	2 cut(s)	238, 251
BmgT120I	GGNCC	2 cut(s)	238, 251
BmiI	GGNNCC	4 cut(s)	59, 226, 240, 680
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	2 cut(s)	58, 113
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	714
Bpu1102I	GCTNAGC	2 cut(s)	23, 373
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	2 cut(s)	77, 142
Bse1I	ACTGG	3 cut(s)	272, 373, 629
BseAI	TCCGGA	1 cut(s)	124
BseGI	GGATG	3 cut(s)	104, 316, 427
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	14, 387
BseNI	ACTGG	3 cut(s)	272, 373, 629
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	68, 163, 314
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	317, 404
BshNI	GGYRCC	2 cut(s)	224, 678
BsiSI	CCGG	3 cut(s)	78, 125, 143
BslI	CCNNNNNNNGG	1 cut(s)	248
BsnI	GGCC	2 cut(s)	317, 404
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	40, 121, 508, 720
Bsp1720I	GCTNAGC	2 cut(s)	23, 373
BspACI	CCGC	2 cut(s)	146, 293
BspANI	GGCC	2 cut(s)	317, 404
BspCNI	CTCAG	2 cut(s)	15, 386
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	59, 226, 240, 680
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	2 cut(s)	116, 715
BspT107I	GGYRCC	2 cut(s)	224, 678
BsrFI	RCCGGY	2 cut(s)	77, 142
BsrI	ACTGG	3 cut(s)	272, 373, 629
BssAI	RCCGGY	2 cut(s)	77, 142
BssMI	GATC	4 cut(s)	40, 121, 508, 720
Bst4CI	ACNGT	3 cut(s)	355, 503, 655
BstC8I	GCNNGC	4 cut(s)	29, 144, 300, 665
BstDEI	CTNAG	3 cut(s)	23, 373, 378
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	104, 316, 427
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	4 cut(s)	43, 124, 511, 723
BstMBI	GATC	4 cut(s)	40, 121, 508, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 87, 299, 401
BstNSI	RCATGY	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	68, 163, 314
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	720
BsuRI	GGCC	2 cut(s)	317, 404
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	104, 316, 427
BtsIMutI	CAGTG	3 cut(s)	499, 636, 651
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	4 cut(s)	29, 144, 300, 665
Cfr10I	RCCGGY	2 cut(s)	77, 142
Cfr13I	GGNCC	2 cut(s)	238, 251
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	361, 635
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	2 cut(s)	235, 413
CviQI	GTAC	2 cut(s)	361, 635
DdeI	CTNAG	3 cut(s)	23, 373, 378
DpnI	GATC	4 cut(s)	42, 123, 510, 722
DpnII	GATC	4 cut(s)	40, 121, 508, 720
EciI	GGCGGA	1 cut(s)	308
Eco147I	AGGCCT	1 cut(s)	404
Eco47I	GGWCC	2 cut(s)	238, 251
Eco57I	CTGAAG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	251
FaeI	CATG	2 cut(s)	238, 416
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	2 cut(s)	234, 412
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	82, 177, 303
FokI	GGATG	3 cut(s)	91, 323, 434
Fsp4HI	GCNGC	3 cut(s)	82, 177, 303
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	3 cut(s)	82, 177, 303
HaeIII	GGCC	2 cut(s)	317, 404
HapII	CCGG	3 cut(s)	78, 125, 143
HgaI	GACGC	1 cut(s)	481
Hin1II	CATG	2 cut(s)	238, 416
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	710
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	3 cut(s)	78, 125, 143
HphI	GGTGA	3 cut(s)	160, 358, 616
Hpy166II	GTNNAC	5 cut(s)	232, 265, 334, 349, 624
Hpy188I	TCNGA	2 cut(s)	184, 720
Hpy188III	TCNNGA	4 cut(s)	47, 125, 254, 658
Hpy8I	GTNNAC	5 cut(s)	232, 265, 334, 349, 624
HpyAV	CCTTC	2 cut(s)	179, 506
HpyCH4III	ACNGT	3 cut(s)	355, 503, 655
HpyCH4V	TGCA	4 cut(s)	395, 412, 543, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 87, 299, 401
HpyF3I	CTNAG	3 cut(s)	23, 373, 378
Hsp92II	CATG	2 cut(s)	238, 416
Kpn2I	TCCGGA	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	40, 121, 508, 720
LmnI	GCTCC	2 cut(s)	57, 295
Lsp1109I	GCAGC	3 cut(s)	68, 163, 314
LweI	GCATC	2 cut(s)	58, 113
MaeI	CTAG	1 cut(s)	468
MalI	GATC	4 cut(s)	42, 123, 510, 722
MboI	GATC	4 cut(s)	40, 121, 508, 720
MboII	GAAGA	5 cut(s)	35, 140, 207, 716, 719
MflI	RGATCY	1 cut(s)	720
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	2 cut(s)	512, 725
MluI	ACGCGT	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	5 cut(s)	12, 242, 307, 412, 475
MreI	CGCCGGCG	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	142
MseI	TTAA	5 cut(s)	63, 195, 264, 684, 730
MslI	CAYNNNNRTG	2 cut(s)	443, 629
MspI	CCGG	3 cut(s)	78, 125, 143
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	28, 87, 299, 401
NaeI	GCCGGC	1 cut(s)	144
NdeII	GATC	4 cut(s)	40, 121, 508, 720
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	238, 416
NlaIV	GGNNCC	4 cut(s)	59, 226, 240, 680
NspI	RCATGY	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	404
PdiI	GCCGGC	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	83, 178, 304
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	59, 226, 240, 680
PspPI	GGNCC	2 cut(s)	238, 251
PspPPI	RGGWCCY	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	720
PsyI	GACNNNGTC	1 cut(s)	653
RsaI	GTAC	2 cut(s)	362, 636
RsaNI	GTAC	2 cut(s)	361, 635
RseI	CAYNNNNRTG	2 cut(s)	443, 629
SaqAI	TTAA	5 cut(s)	63, 195, 264, 684, 730
SatI	GCNGC	3 cut(s)	82, 177, 303
Sau3AI	GATC	4 cut(s)	40, 121, 508, 720
Sau96I	GGNCC	2 cut(s)	238, 251
SchI	GAGTC	1 cut(s)	704
SduI	GDGCHC	1 cut(s)	681
SetI	ASST	9 cut(s)	29, 195, 253, 289, 379, 548, 603, 665, 684
SfaNI	GCATC	2 cut(s)	58, 113
SgrAI	CRCCGGYG	1 cut(s)	142
SinI	GGWCC	2 cut(s)	238, 251
SmiMI	CAYNNNNRTG	2 cut(s)	443, 629
Sse9I	AATT	2 cut(s)	512, 725
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	2 cut(s)	146, 293
SspMI	CTAG	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	404
TaaI	ACNGT	3 cut(s)	355, 503, 655
TaqI	TCGA	2 cut(s)	48, 534
TasI	AATT	2 cut(s)	512, 725
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	5 cut(s)	63, 195, 264, 684, 730
Tru9I	TTAA	5 cut(s)	63, 195, 264, 684, 730
TscAI	CASTG	3 cut(s)	506, 636, 658
TseI	GCWGC	3 cut(s)	81, 176, 302
TspDTI	ATGAA	1 cut(s)	465
TspRI	CASTG	3 cut(s)	506, 636, 658
Tth111I	GACNNNGTC	1 cut(s)	653
VpaK11BI	GGWCC	2 cut(s)	238, 251
XagI	CCTNNNNNAGG	1 cut(s)	246
XceI	RCATGY	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.