Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033650.1

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 944

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033650.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggtgtcgccggctgtgaatggaacaaagaatgtgatcgttgccgcttctgaagttaaggttaaacgcgtggtcttcacatcttcaatcggtgccgtctacatgaaccccaccagaggtcccgatgtggttgtcgatgagtcctgttggagcgacctggagttttgcaagaacaccaagaactggtactgctatgggaaaactgtggcagagctagcagcttgggatgaagccaaagagagaggggtggacttggttgtggtgaacccagtttttgtgcttggaccactgctccaacccaccatcaacattagcactctccacatcctccagtacttgactggctcagccaagacttatgccaattcaattcaggcctatgtgcatgttaaggatgtggcattagcacacatactagtgtatgaaactccctct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

145

Amino Acids

15.86

Weight (kDa)

6.27

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	2 cut(s)	188, 335
AfiI	CCNNNNNNNGG	2 cut(s)	116, 183
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	87, 369
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	214, 221
AluI	AGCT	2 cut(s)	214, 221
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	119, 284
AsuHPI	GGTGA	1 cut(s)	274
AsuNHI	GCTAGC	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	119, 284
BanI	GGYRCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	215, 416
BisI	GCNGC	2 cut(s)	45, 219
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	2 cut(s)	46, 220
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	2 cut(s)	119, 284
BmgT120I	GGNCC	2 cut(s)	119, 284
BmiI	GGNNCC	2 cut(s)	94, 121
BmrFI	CCNGG	1 cut(s)	158
BmrI	ACTGGG	1 cut(s)	263
BmtI	GCTAGC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	179, 314
Bpu1102I	GCTNAGC	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 183
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	4 cut(s)	188, 269, 331, 346
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	232, 324, 400
BseLI	CCNNNNNNNGG	2 cut(s)	116, 183
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	4 cut(s)	188, 269, 331, 346
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	116, 183
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	36
Bsp1720I	GCTNAGC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	94, 121
BspOI	GCTAGC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	188, 269, 331, 346
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	12, 216
BstDEI	CTNAG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	232, 324, 400
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	232, 324, 400
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	12, 216
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	119, 284
Csp6I	GTAC	2 cut(s)	187, 334
CviAII	CATG	2 cut(s)	103, 386
CviJI	RGCY	7 cut(s)	14, 214, 221, 233, 345, 350, 377
CviKI_1	RGCY	7 cut(s)	14, 214, 221, 233, 345, 350, 377
CviQI	GTAC	2 cut(s)	187, 334
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	119, 284
Eco57I	CTGAAG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	106, 389
FaiI	YATR	7 cut(s)	104, 195, 360, 381, 387, 413, 423
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	102, 385
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	45, 219
FokI	GGATG	3 cut(s)	239, 311, 407
Fsp4HI	GCNGC	2 cut(s)	45, 219
FspBI	CTAG	2 cut(s)	215, 416
GluI	GCNGC	2 cut(s)	45, 219
GsuI	CTGGAG	2 cut(s)	179, 314
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	2 cut(s)	106, 389
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	100, 250, 265
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	3 cut(s)	100, 250, 265
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	168, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	106, 389
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	150, 297
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	215, 416
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	2 cut(s)	67, 75
MluCI	AATT	2 cut(s)	364, 369
MluI	ACGCGT	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	128, 319
MnlI	CCTC	3 cut(s)	110, 236, 338
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	3 cut(s)	57, 63, 390
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	215
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	10
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	106, 389
NlaIV	GGNNCC	2 cut(s)	94, 121
NspI	RCATGY	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	377
PdiI	GCCGGC	1 cut(s)	12
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	46, 220
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	94, 121
PspPI	GGNCC	2 cut(s)	119, 284
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	2 cut(s)	188, 335
RsaNI	GTAC	2 cut(s)	187, 334
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	57, 63, 390
SatI	GCNGC	2 cut(s)	45, 219
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	2 cut(s)	119, 284
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	5 cut(s)	63, 121, 159, 216, 223
SinI	GGWCC	2 cut(s)	119, 284
SmiMI	CAYNNNNRTG	1 cut(s)	416
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	2 cut(s)	364, 369
SseBI	AGGCCT	1 cut(s)	377
SsiI	CCGC	1 cut(s)	45
SspMI	CTAG	2 cut(s)	215, 416
StuI	AGGCCT	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	364, 369
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	47
Tru1I	TTAA	3 cut(s)	57, 63, 390
Tru9I	TTAA	3 cut(s)	57, 63, 390
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	119, 243
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	119, 284
XceI	RCATGY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	215, 416
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.