Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

7410190 .. 7411177

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAGAACTGGTACTGCTATGCGAAAACAGTGGCAGAGCAGACAGCTTGGGAAGAGGCCAAGGAGAAAGGGGTGGATTTGGTGGTGGTGAACCCAGTTTTGGTGCTCGGACCACTTCTCCAACCAACCGTCAACGCTAGCATCATCCACATCCTCAAGTACCTCAAAGGCTCTGCCAAGACTTATGCCAATTCTGTGCAGGCCTATGTGCATGTTAGGGACGTGGCTCTGGCCCACATTCTGGTGTATGAAACTCCATCTGCCTCTGGAAGGTACCTTTGTGGTGAGAGTGTGCTTCACCGTGGAGACGTGGTGGAAATCCTAGCCACGTTCTTCCCAGAATACCCAATTCCCACCAGGTGCTCGGATGAAGTCAAACCAAGAGTAAAACCATACAAGTTGACAACCCAGAAGCTACAAGACTTGGGCGTGGAGTTCACTCCAGTGAAACAGTGCCTATATGAAACTGTCAAGAGCTTGCAGGAGAAGGGCCACCTTCCAGTGCCTAAACCACAAGAAGTTCCATTAAAATTCAATCTTAAATCTTGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

185

Amino Acids

20.65

Weight (kDa)

8.51

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	530
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	3 cut(s)	14, 161, 275
AfiI	CCNNNNNNNGG	3 cut(s)	100, 241, 270
AgsI	TTSAA	1 cut(s)	535
AjiI	CACGTC	2 cut(s)	223, 310
AjnI	CCWGG	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	3 cut(s)	47, 415, 477
AluI	AGCT	3 cut(s)	47, 415, 477
Alw21I	GWGCWC	2 cut(s)	108, 365
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	4 cut(s)	57, 201, 231, 490
ApoI	RAATTY	1 cut(s)	530
Asp718I	GGTACC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	110, 232, 490
AsuHPI	GGTGA	3 cut(s)	100, 290, 296
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BanI	GGYRCC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	108, 365
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	138, 323
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	110
BmgBI	CACGTC	2 cut(s)	223, 310
BmgT120I	GGNCC	3 cut(s)	110, 232, 490
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	60, 301
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 297, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 241, 270
Bse1I	ACTGG	4 cut(s)	14, 95, 443, 500
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	60, 301
BseGI	GGATG	3 cut(s)	144, 150, 373
BseLI	CCNNNNNNNGG	3 cut(s)	100, 241, 270
BseNI	ACTGG	4 cut(s)	14, 95, 443, 500
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	4 cut(s)	59, 203, 233, 492
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	108, 365
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	100, 241, 270
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	59, 203, 233, 492
Bsp1286I	GDGCHC	2 cut(s)	108, 365
BspANI	GGCC	4 cut(s)	59, 203, 233, 492
BspLI	GGNNCC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	273
BsrI	ACTGG	4 cut(s)	14, 95, 443, 500
BssECI	CCNNGG	2 cut(s)	60, 301
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	5 cut(s)	31, 130, 302, 453, 469
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	139, 201, 479
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	144, 150, 373
BstMAI	GTCTC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	356
BsuRI	GGCC	4 cut(s)	59, 203, 233, 492
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	2 cut(s)	223, 310
BtsCI	GGATG	3 cut(s)	144, 150, 373
BtsIMutI	CAGTG	4 cut(s)	36, 450, 458, 507
Cac8I	GCNNGC	3 cut(s)	139, 201, 479
Cfr13I	GGNCC	3 cut(s)	110, 232, 490
CsiI	ACCWGGT	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	13, 160, 274
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	3 cut(s)	13, 160, 274
DraIII	CACNNNGTG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	215
FaiI	YATR	8 cut(s)	21, 186, 207, 213, 249, 394, 460, 462
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	1 cut(s)	211
FokI	GGATG	3 cut(s)	131, 137, 380
FspBI	CTAG	2 cut(s)	138, 323
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	59, 203, 233, 492
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	133, 402
HindII	GTYRAC	2 cut(s)	133, 402
HphI	GGTGA	3 cut(s)	100, 290, 296
Hpy166II	GTNNAC	4 cut(s)	91, 133, 402, 438
Hpy188I	TCNGA	2 cut(s)	110, 367
Hpy188III	TCNNGA	2 cut(s)	267, 472
Hpy8I	GTNNAC	4 cut(s)	91, 133, 402, 438
HpyAV	CCTTC	3 cut(s)	264, 481, 506
HpyCH4III	ACNGT	5 cut(s)	31, 130, 302, 453, 469
HpyCH4IV	ACGT	3 cut(s)	222, 309, 329
HpyCH4V	TGCA	4 cut(s)	4, 199, 211, 481
HpySE526I	ACGT	3 cut(s)	222, 309, 329
Hsp92II	CATG	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	277
LweI	GCATC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	356
MaeI	CTAG	2 cut(s)	138, 323
MaeII	ACGT	3 cut(s)	222, 309, 329
MboII	GAAGA	2 cut(s)	65, 325
MhlI	GDGCHC	2 cut(s)	108, 365
MluCI	AATT	3 cut(s)	190, 348, 530
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	49, 164, 173, 274
MseI	TTAA	2 cut(s)	527, 540
MslI	CAYNNNNRTG	2 cut(s)	242, 443
MspR9I	CCNGG	1 cut(s)	358
MvaI	CCWGG	1 cut(s)	358
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	3 cut(s)	110, 232, 490
RsaI	GTAC	3 cut(s)	14, 161, 275
RsaNI	GTAC	3 cut(s)	13, 160, 274
RseI	CAYNNNNRTG	2 cut(s)	242, 443
SaqAI	TTAA	2 cut(s)	527, 540
Sau96I	GGNCC	3 cut(s)	110, 232, 490
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	108, 365
SexAI	ACCWGGT	1 cut(s)	356
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	242, 443
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	190, 348, 530
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	138, 323
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	5 cut(s)	31, 130, 302, 453, 469
TaiI	ACGT	3 cut(s)	225, 312, 332
TasI	AATT	3 cut(s)	190, 348, 530
Tru1I	TTAA	2 cut(s)	527, 540
Tru9I	TTAA	2 cut(s)	527, 540
TscAI	CASTG	4 cut(s)	36, 450, 458, 507
TspDTI	ATGAA	3 cut(s)	264, 384, 477
TspRI	CASTG	4 cut(s)	36, 450, 458, 507
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	2 cut(s)	138, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.