Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

21043883 .. 21046500

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGACCGCTGTTCTTGTTTTTTGCCTCCCCATTCTTCCAGCACAAACGCACTTCAAACTTTCCTTTTCGTCTCTTCTCTTCTTATCTCTTTCGCTCCCAACAACCCCAAAAAAGAAAGTCTGTATCGTATCTCGTCCGGAAACAAAGCTAATAACCAAGATGCCTGCCGATAGCTCATCAATTTCCGGCCACGGCCAAACTATTTGTGTCACTGGAGCTGGAGGCTTCATTGCTTCTTGGATGGTGAAGCTATTACTCGAAAGCGGCTACACTGTTCGAGGAACCTTGAGAAACCCACATGACCCAAAGAATGCTTATTTGAGAGAGCTTGAAGGAGCTGCAGAGAGACTAACTTTGTGCAGAGCTGATCTCCTCGATTATGAGAGCCTCAAAGAAGCCATTAACGGCTGTGATGGAGTTTTTCACACAGCATCACCTGTCACGGATGATCCAGAACAAATGGTGGAGCCCTCAGTGAACGGAACCAAGAATGTGATTCAGGCAGCGGCGGAAGGAAAGGTGAAACGGGTGGTTTTCACGTCGTCAATCGGTGCGGTGTACATGGACCCCACCAGGGGTCCTGATGTGGTGGTTGATGAATCTTGTTGGAGTGATCTTGAATTTTGCAAGAACACCAAGAACTGGTACTGCTACGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGCTGAGGCCAAAGAGAAAGGGGTGGACTTGGTGGTGGTGAACCCAGTGTTGGTGCTCGGACCACTTCTGCAACCAACTGTTAACGCTAGCATCATTCATATCCTCAAGTACTTGAAAGGCTCAACCCAAACATATGCCAATTCAGTTCAGGCCTACGTGCATGTTAGGGACGTTGCACTAGCTCACATTCTGGTTTATGAGACACCCTCTGCCTCTGGCAGATATATTTGTGCTGAGAGTGTGCTCCATCGTGGCGATGTGGTGGAAATCCTGGCCAAATTCTTCCCGGAATACCCTATTCCCAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

333

Amino Acids

36.22

Weight (kDa)

7.06

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	5 cut(s)	9, 267, 509, 512, 557
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	3 cut(s)	190, 196, 960
AcsI	RAATTY	2 cut(s)	623, 965
AfaI	GTAC	3 cut(s)	563, 650, 797
AfiI	CCNNNNNNNGG	4 cut(s)	577, 578, 645, 736
AgsI	TTSAA	4 cut(s)	58, 335, 623, 802
AjiI	CACGTC	1 cut(s)	543
AjnI	CCWGG	2 cut(s)	575, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	8 cut(s)	151, 177, 221, 253, 331, 341, 368, 869
AluI	AGCT	8 cut(s)	151, 177, 221, 253, 331, 341, 368, 869
Alw21I	GWGCWC	2 cut(s)	744, 933
Alw26I	GTCTC	3 cut(s)	78, 343, 881
AlwI	GGATC	1 cut(s)	446
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	5 cut(s)	190, 196, 693, 837, 960
ApeKI	GCWGC	3 cut(s)	341, 506, 680
ApoI	RAATTY	2 cut(s)	623, 965
AspS9I	GGNCC	3 cut(s)	568, 581, 746
AsuC2I	CCSGG	1 cut(s)	974
AsuHPI	GGTGA	4 cut(s)	259, 429, 535, 736
AsuNHI	GCTAGC	1 cut(s)	773
AvaII	GGWCC	3 cut(s)	568, 581, 746
BalI	TGGCCA	1 cut(s)	962
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	744, 933
BbvCI	CCTCAGC	1 cut(s)	690
BbvI	GCAGC	3 cut(s)	328, 518, 692
BccI	CCATC	3 cut(s)	238, 410, 942
BceAI	ACGGC	2 cut(s)	211, 424
BciT130I	CCWGG	2 cut(s)	577, 959
BcnI	CCSGG	1 cut(s)	974
BcoDI	GTCTC	3 cut(s)	78, 343, 881
BfaI	CTAG	2 cut(s)	774, 866
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	5 cut(s)	268, 342, 507, 510, 681
BlsI	GCNGC	5 cut(s)	269, 343, 508, 511, 682
BmcAI	AGTACT	1 cut(s)	797
Bme1390I	CCNGG	3 cut(s)	577, 959, 974
Bme18I	GGWCC	3 cut(s)	568, 581, 746
BmgBI	CACGTC	1 cut(s)	543
BmgT120I	GGNCC	3 cut(s)	568, 581, 746
BmiI	GGNNCC	5 cut(s)	286, 471, 487, 570, 582
BmrFI	CCNGG	3 cut(s)	577, 959, 974
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	3 cut(s)	153, 443, 786
BmtI	GCTAGC	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	4 cut(s)	357, 389, 878, 910
BpmI	CTGGAG	2 cut(s)	237, 243
Bpu10I	CCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	310, 776
BpuMI	CCSGG	1 cut(s)	974
BsaAI	YACGTR	1 cut(s)	844
BsaJI	CCNNGG	2 cut(s)	193, 576
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	4 cut(s)	577, 578, 645, 736
Bse1I	ACTGG	3 cut(s)	220, 650, 731
Bse3DI	GCAATG	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	577, 959
BseDI	CCNNGG	2 cut(s)	193, 576
BseGI	GGATG	2 cut(s)	249, 454
BseLI	CCNNNNNNNGG	4 cut(s)	577, 578, 645, 736
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	489, 681, 912
BseNI	ACTGG	3 cut(s)	220, 650, 731
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	328, 518, 692
BsgI	GTGCAG	1 cut(s)	382
BshFI	GGCC	5 cut(s)	192, 198, 695, 839, 962
BsiHKAI	GWGCWC	2 cut(s)	744, 933
BsiSI	CCGG	3 cut(s)	140, 189, 974
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	4 cut(s)	577, 578, 645, 736
BsmAI	GTCTC	3 cut(s)	78, 343, 881
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	869
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	5 cut(s)	192, 198, 695, 839, 962
Bsp1286I	GDGCHC	3 cut(s)	474, 744, 933
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	370, 451, 616
BspACI	CCGC	5 cut(s)	9, 267, 509, 512, 557
BspANI	GGCC	5 cut(s)	192, 198, 695, 839, 962
BspCNI	CTCAG	3 cut(s)	488, 682, 913
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	5 cut(s)	286, 471, 487, 570, 582
BspMAI	CTGCAG	1 cut(s)	346
BspOI	GCTAGC	1 cut(s)	777
BspPI	GGATC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	220, 650, 731
BssECI	CCNNGG	2 cut(s)	193, 576
BssMI	GATC	3 cut(s)	370, 451, 616
Bst2UI	CCWGG	2 cut(s)	577, 959
Bst4CI	ACNGT	2 cut(s)	277, 766
Bst6I	CTCTTC	2 cut(s)	81, 86
BstAUI	TGTACA	1 cut(s)	561
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	168, 678, 775
BstDEI	CTNAG	3 cut(s)	475, 690, 921
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	249, 454
BstKTI	GATC	3 cut(s)	373, 454, 619
BstMAI	GTCTC	3 cut(s)	78, 343, 881
BstMBI	GATC	3 cut(s)	370, 451, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 686
BstNI	CCWGG	2 cut(s)	577, 959
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	3 cut(s)	575, 957, 972
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	328, 518, 692
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	5 cut(s)	192, 198, 695, 839, 962
BtgI	CCRYGG	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	957
BtrI	CACGTC	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	249, 454
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	5 cut(s)	213, 273, 483, 672, 738
Cac8I	GCNNGC	3 cut(s)	168, 678, 775
Cfr13I	GGNCC	3 cut(s)	568, 581, 746
Csp6I	GTAC	3 cut(s)	562, 649, 796
CviAII	CATG	4 cut(s)	302, 565, 684, 848
CviQI	GTAC	3 cut(s)	562, 649, 796
DdeI	CTNAG	3 cut(s)	475, 690, 921
DpnI	GATC	3 cut(s)	372, 453, 618
DpnII	GATC	3 cut(s)	370, 451, 616
EaeI	YGGCCR	3 cut(s)	190, 196, 960
Eam1104I	CTCTTC	2 cut(s)	81, 86
EarI	CTCTTC	2 cut(s)	81, 86
EciI	GGCGGA	1 cut(s)	527
Eco147I	AGGCCT	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	3 cut(s)	568, 581, 746
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	575, 957
EcoT38I	GRGCYC	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	305, 568, 687, 851
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	4 cut(s)	301, 564, 683, 847
FauNDI	CATATG	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	268, 342, 507, 510, 681
FokI	GGATG	2 cut(s)	256, 461
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	268, 342, 507, 510, 681
FspBI	CTAG	2 cut(s)	774, 866
GluI	GCNGC	5 cut(s)	268, 342, 507, 510, 681
GsuI	CTGGAG	2 cut(s)	237, 243
HaeIII	GGCC	5 cut(s)	192, 198, 695, 839, 962
HapII	CCGG	3 cut(s)	140, 189, 974
Hin1II	CATG	4 cut(s)	305, 568, 687, 851
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	2 cut(s)	499, 602
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	3 cut(s)	140, 189, 974
HphI	GGTGA	4 cut(s)	259, 429, 535, 736
Hpy166II	GTNNAC	5 cut(s)	481, 562, 712, 727, 769
Hpy188I	TCNGA	1 cut(s)	746
Hpy188III	TCNNGA	4 cut(s)	140, 455, 584, 620
Hpy8I	GTNNAC	5 cut(s)	481, 562, 712, 727, 769
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	2 cut(s)	329, 509
HpyCH4III	ACNGT	2 cut(s)	277, 766
HpyCH4IV	ACGT	3 cut(s)	542, 843, 858
HpyCH4V	TGCA	6 cut(s)	344, 363, 630, 757, 847, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 686
HpyF3I	CTNAG	3 cut(s)	475, 690, 921
HpySE526I	ACGT	3 cut(s)	542, 843, 858
Hsp92II	CATG	4 cut(s)	305, 568, 687, 851
Kpn2I	TCCGGA	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	370, 451, 616
LmnI	GCTCC	5 cut(s)	102, 218, 338, 469, 936
Lsp1109I	GCAGC	3 cut(s)	328, 518, 692
LweI	GCATC	3 cut(s)	153, 443, 786
MaeI	CTAG	2 cut(s)	774, 866
MaeII	ACGT	3 cut(s)	542, 843, 858
MaeIII	GTNAC	2 cut(s)	211, 442
MalI	GATC	3 cut(s)	372, 453, 618
MboI	GATC	3 cut(s)	370, 451, 616
MboII	GAAGA	5 cut(s)	16, 29, 68, 73, 961
MhlI	GDGCHC	3 cut(s)	474, 744, 933
MlsI	TGGCCA	1 cut(s)	962
MluCI	AATT	4 cut(s)	183, 623, 826, 965
MluNI	TGGCCA	1 cut(s)	962
MmeI	TCCRAC	1 cut(s)	590
Mox20I	TGGCCA	1 cut(s)	962
MroI	TCCGGA	1 cut(s)	139
MscI	TGGCCA	1 cut(s)	962
MseI	TTAA	2 cut(s)	405, 768
Msp20I	TGGCCA	1 cut(s)	962
MspA1I	CMGCKG	2 cut(s)	11, 509
MspI	CCGG	3 cut(s)	140, 189, 974
MspR9I	CCNGG	3 cut(s)	577, 959, 974
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	577, 959
MwoI	GCNNNNNNNGC	2 cut(s)	677, 686
NciI	CCSGG	1 cut(s)	974
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	3 cut(s)	370, 451, 616
NheI	GCTAGC	1 cut(s)	773
NlaIII	CATG	4 cut(s)	305, 568, 687, 851
NlaIV	GGNNCC	5 cut(s)	286, 471, 487, 570, 582
NmuCI	GTSAC	2 cut(s)	211, 442
NspI	RCATGY	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	839
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	499, 602
PflMI	CCANNNNNTGG	1 cut(s)	645
PfoI	TCCNGGA	1 cut(s)	972
PkrI	GCNGC	5 cut(s)	269, 343, 508, 511, 682
Ppu21I	YACGTR	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	575, 957
PspGI	CCWGG	2 cut(s)	575, 957
PspN4I	GGNNCC	5 cut(s)	286, 471, 487, 570, 582
PspPI	GGNCC	3 cut(s)	568, 581, 746
PspPPI	RGGWCCY	1 cut(s)	581
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	563, 650, 797
RsaNI	GTAC	3 cut(s)	562, 649, 796
SaqAI	TTAA	2 cut(s)	405, 768
SatI	GCNGC	5 cut(s)	268, 342, 507, 510, 681
Sau3AI	GATC	3 cut(s)	370, 451, 616
Sau96I	GGNCC	3 cut(s)	568, 581, 746
ScaI	AGTACT	1 cut(s)	797
ScrFI	CCNGG	3 cut(s)	577, 959, 974
SduI	GDGCHC	3 cut(s)	474, 744, 933
SfaNI	GCATC	3 cut(s)	153, 443, 786
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	3 cut(s)	568, 581, 746
SmlI	CTYRAG	2 cut(s)	289, 791
SmoI	CTYRAG	2 cut(s)	289, 791
Sse9I	AATT	4 cut(s)	183, 623, 826, 965
SseBI	AGGCCT	1 cut(s)	839
SsiI	CCGC	5 cut(s)	9, 267, 509, 512, 557
SspMI	CTAG	2 cut(s)	774, 866
StuI	AGGCCT	1 cut(s)	839
StyD4I	CCNGG	3 cut(s)	575, 957, 972
TaaI	ACNGT	2 cut(s)	277, 766
TaiI	ACGT	3 cut(s)	545, 846, 861
TaqI	TCGA	3 cut(s)	261, 280, 378
TasI	AATT	4 cut(s)	183, 623, 826, 965
TatI	WGTACW	2 cut(s)	561, 795
TauI	GCSGC	2 cut(s)	270, 512
TfiI	GAWTC	2 cut(s)	499, 602
Tru1I	TTAA	2 cut(s)	405, 768
Tru9I	TTAA	2 cut(s)	405, 768
TscAI	CASTG	5 cut(s)	220, 280, 483, 672, 738
TseFI	GTSAC	2 cut(s)	211, 442
TseI	GCWGC	3 cut(s)	341, 506, 680
Tsp45I	GTSAC	2 cut(s)	211, 442
TspDTI	ATGAA	4 cut(s)	17, 220, 615, 773
TspGWI	ACGGA	2 cut(s)	461, 498
TspRI	CASTG	5 cut(s)	220, 280, 483, 672, 738
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	3 cut(s)	568, 581, 746
XapI	RAATTY	2 cut(s)	623, 965
XceI	RCATGY	1 cut(s)	851
XspI	CTAG	2 cut(s)	774, 866
ZrmI	AGTACT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.