Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002169

Physical Location & Seq

Genomic Coordinates Forward (+)

7476583 .. 7481493

Gene Structure 4911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCCTGCCGATAGTTCTTCAGTTTCAGGCCATGGCCAAACTGTTTGTGTAACCGGAGCTGGAGGCTTCATTGCTTCCTGGATTGTCAAACTATTGCTAGAAAGAGGCTACACTGTTAGGGGAACCTTGAGAAACCCAGATGACCCAAAGAATGCTCATTTGAGGGAGCTTGAGGGAGCTCAAGAGAGGTTAAGTTTGCGTAAAGCTGATCTTCTTGACTATGAGAGCCTCAAAGAAGCCATCAACGGCTGTGATGGCGTTTTTCACACAGCATCACCTGTTACGGATGACCCAGAACAAATGGTGGAGCCCGCGGTGAATGGAACAAAGAATGTGATTGTTGCGGCAGCAGAAGCTAAGGTTAAACGGGTGGTGTTCACGTCGTCAATCGGTGCGGTGTACATGGACCCCACCAGGGGCCCTGATGTGGTGGTCGATGAATCTTGTTGGAGTGATCTTGAATTCTGCAAGAACACCAAGAACTGGTACTGCTATGGGAAAGCAGTGGCAGAGCAGGCAGCATGGGAAGAGGCCAAGGCGAAAGGGGTGGATTTGGTGGTGGTGAACCCAGTTTTGGTGCTTGGACCACTTCTGCAACCAACCATCAACGCCAGCATCATCCACGTCCTCAAGTACCTCACAGGCTCAGCCAAGACTTATGCCAATTCTGTGCAGGCCTATGTGCATGTTAGGGACGTGGCTCTGGCCCACATTCTGGTGTATGAAATTCCATCTGCCTCTGGAAGGTACCTTTGTGCTGAGAGTGTGCTTCATCGTGGAGATGTGGTGGAAATCCTAGCCAAGTTCTTCCCAGAGTACCCAATTCCCACCAAGTGCTCAGATGAAGTCAAACCCAGAGTAAAACCGTACAAGTTCTCGAACCAGAAGCTACAAGACTTGGGCTTGGAGTTCACCCCAGTGAAACAGTGCCTATATGACACTGTCAAGAGCTTGCAGGAGAAGGGCCACCTTGCAGTGCCTAAACCACAAGAAGATTCCATTAAAATTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0006950 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016620 GO:0016621 GO:0016903 GO:0019438 GO:0019748 GO:0042752 GO:0042754 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048511 GO:0048519 GO:0050789 GO:0050896 GO:0055114 GO:0065007 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

339

Amino Acids

37.01

Weight (kDa)

6.1

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G15950 AT1G80820 AT1G80820
fragaria_vesca	FvH4_6g28680 FvH4_6g28680
malus_domestica	MD09G1224200.v1.1 MD17G1222400.v1.1
prunus_persica	Prupe.3G097500_v2.0.a1 Prupe.3G097600_v2.0.a1 Prupe.3G097700_v2.0.a1
pyrus_communis	pycom09g14320 pycom17g22630 pycom17g22650 pycom17g22670
rosa_chinensis	RchiOBHm_Chr1g0339261 RchiOBHm_Chr2g0133081
rosa_laevigata	RLG00000019307 RLG00000029205 RLG00000029212 RLG00000029219 RLG00000029221
rosa_multiflora	Rmu_sc0002571.1_g000033 Rmu_sc0033650.1_g000001 Rmu_sc0034151.1_g000001 Rmu_sc0034152.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111530
rosa_rugosa	Rorug01G0143600.1 Rorug02G0309600
rosa_samantha	Rh1BG127100 Rh1CG149600 Rh1DG163700 Rh2AG362000 Rh2BG367700 Rh2CG345300 Rh2DG384600
rosa_wichuraiana	Rw1G013480 Rw2G029430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	747
AccB1I	GGYRCC	1 cut(s)	747
AccB7I	CCANNNNNTGG	2 cut(s)	483, 715
AccII	CGCG	1 cut(s)	314
AciI	CCGC	4 cut(s)	312, 314, 344, 395
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	3 cut(s)	461, 726, 1005
AdeI	CACNNNGTG	1 cut(s)	834
AfaI	GTAC	6 cut(s)	401, 488, 635, 749, 818, 869
AfiI	CCNNNNNNNGG	7 cut(s)	415, 416, 427, 483, 574, 715, 744
AgsI	TTSAA	2 cut(s)	461, 1010
AjiI	CACGTC	3 cut(s)	381, 625, 697
AjnI	CCWGG	2 cut(s)	77, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AleI	CACNNNNGTG	1 cut(s)	917
AluBI	AGCT	7 cut(s)	59, 169, 179, 206, 356, 889, 951
AluI	AGCT	7 cut(s)	59, 169, 179, 206, 356, 889, 951
Alw21I	GWGCWC	2 cut(s)	181, 839
AoxI	GGCC	7 cut(s)	28, 34, 418, 531, 675, 705, 964
ApaI	GGGCCC	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	347, 518
ApoI	RAATTY	3 cut(s)	461, 726, 1005
Asp718I	GGTACC	1 cut(s)	747
AspS9I	GGNCC	6 cut(s)	406, 418, 419, 584, 706, 964
AsuHPI	GGTGA	4 cut(s)	267, 328, 574, 904
AvaII	GGWCC	2 cut(s)	406, 584
BaeGI	GKGCMC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	739, 772
BalI	TGGCCA	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	747
BanII	GRGCYC	3 cut(s)	181, 312, 422
Bbv12I	GWGCWC	2 cut(s)	181, 839
BbvI	GCAGC	2 cut(s)	359, 530
BccI	CCATC	4 cut(s)	248, 248, 611, 739
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	2 cut(s)	79, 415
BfaI	CTAG	2 cut(s)	98, 797
BisI	GCNGC	3 cut(s)	345, 348, 519
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	3 cut(s)	346, 349, 520
Bme1390I	CCNGG	2 cut(s)	79, 415
Bme18I	GGWCC	2 cut(s)	406, 584
BmgBI	CACGTC	3 cut(s)	381, 625, 697
BmgT120I	GGNCC	6 cut(s)	406, 418, 419, 584, 706, 964
BmiI	GGNNCC	6 cut(s)	124, 309, 408, 419, 420, 749
BmrFI	CCNGG	2 cut(s)	79, 415
BmrI	ACTGGG	2 cut(s)	563, 911
BmsI	GCATC	2 cut(s)	281, 624
BmuI	ACTGGG	2 cut(s)	563, 911
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	646
BpuEI	CTTGAG	4 cut(s)	148, 165, 191, 614
BsaJI	CCNNGG	4 cut(s)	31, 312, 414, 534
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bsc4I	CCNNNNNNNGG	7 cut(s)	415, 416, 427, 483, 574, 715, 744
Bse1I	ACTGG	3 cut(s)	488, 569, 917
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	79, 415
BseDI	CCNNGG	4 cut(s)	31, 312, 414, 534
BseGI	GGATG	2 cut(s)	292, 618
BseLI	CCNNNNNNNGG	7 cut(s)	415, 416, 427, 483, 574, 715, 744
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	660, 750, 852
BseNI	ACTGG	3 cut(s)	488, 569, 917
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	359, 530
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	314
BshFI	GGCC	7 cut(s)	30, 36, 420, 533, 677, 707, 966
BshNI	GGYRCC	1 cut(s)	747
BsiHKAI	GWGCWC	2 cut(s)	181, 839
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	7 cut(s)	415, 416, 427, 483, 574, 715, 744
BsmFI	GGGAC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	7 cut(s)	30, 36, 420, 533, 677, 707, 966
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	4 cut(s)	181, 312, 422, 839
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	208, 454
Bsp1720I	GCTNAGC	1 cut(s)	646
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	4 cut(s)	312, 314, 344, 395
BspANI	GGCC	7 cut(s)	30, 36, 420, 533, 677, 707, 966
BspCNI	CTCAG	3 cut(s)	659, 751, 851
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	6 cut(s)	124, 309, 408, 419, 420, 749
BspT107I	GGYRCC	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	488, 569, 917
BssECI	CCNNGG	4 cut(s)	31, 312, 414, 534
BssMI	GATC	2 cut(s)	208, 454
BssT1I	CCWWGG	2 cut(s)	31, 534
Bst2UI	CCWGG	2 cut(s)	79, 415
Bst4CI	ACNGT	5 cut(s)	43, 115, 867, 927, 943
Bst6I	CTCTTC	1 cut(s)	522
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	6 cut(s)	6, 312, 516, 613, 675, 953
BstDEI	CTNAG	4 cut(s)	357, 646, 759, 838
BstDSI	CCRYGG	2 cut(s)	31, 312
BstENI	CCTNNNNNAGG	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	292, 618
BstFNI	CGCG	1 cut(s)	314
BstKTI	GATC	2 cut(s)	211, 457
BstMBI	GATC	2 cut(s)	208, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 353, 515
BstNI	CCWGG	2 cut(s)	79, 415
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	77, 413
BstSLI	GKGCMC	1 cut(s)	422
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	359, 530
BsuRI	GGCC	7 cut(s)	30, 36, 420, 533, 677, 707, 966
BtgI	CCRYGG	2 cut(s)	31, 312
BtrI	CACGTC	3 cut(s)	381, 625, 697
BtsCI	GGATG	2 cut(s)	292, 618
BtsI	GCAGTG	2 cut(s)	510, 981
BtsIMutI	CAGTG	6 cut(s)	111, 510, 924, 932, 939, 981
Cac8I	GCNNGC	6 cut(s)	6, 312, 516, 613, 675, 953
Cfr13I	GGNCC	6 cut(s)	406, 418, 419, 584, 706, 964
Cfr42I	CCGCGG	1 cut(s)	315
Csp6I	GTAC	6 cut(s)	400, 487, 634, 748, 817, 868
CviAII	CATG	4 cut(s)	32, 403, 522, 686
CviQI	GTAC	6 cut(s)	400, 487, 634, 748, 817, 868
DdeI	CTNAG	4 cut(s)	357, 646, 759, 838
DpnI	GATC	2 cut(s)	210, 456
DpnII	GATC	2 cut(s)	208, 454
DraIII	CACNNNGTG	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	31, 534
Eco147I	AGGCCT	1 cut(s)	677
Eco24I	GRGCYC	3 cut(s)	181, 312, 422
Eco47I	GGWCC	2 cut(s)	406, 584
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	742
EcoO109I	RGGNCCY	2 cut(s)	418, 419
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	77, 413
EcoT14I	CCWWGG	2 cut(s)	31, 534
EcoT38I	GRGCYC	3 cut(s)	181, 312, 422
ErhI	CCWWGG	2 cut(s)	31, 534
FaeI	CATG	4 cut(s)	35, 406, 525, 689
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	4 cut(s)	31, 402, 521, 685
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	345, 348, 519
FokI	GGATG	2 cut(s)	299, 605
FriOI	GRGCYC	3 cut(s)	181, 312, 422
Fsp4HI	GCNGC	3 cut(s)	345, 348, 519
FspBI	CTAG	2 cut(s)	98, 797
GluI	GCNGC	3 cut(s)	345, 348, 519
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	7 cut(s)	30, 36, 420, 533, 677, 707, 966
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	4 cut(s)	35, 406, 525, 689
HinfI	GANTC	2 cut(s)	440, 995
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	267, 328, 574, 904
Hpy166II	GTNNAC	4 cut(s)	378, 400, 565, 912
Hpy188I	TCNGA	1 cut(s)	841
Hpy188III	TCNNGA	6 cut(s)	182, 215, 458, 741, 877, 946
Hpy8I	GTNNAC	4 cut(s)	378, 400, 565, 912
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	2 cut(s)	738, 955
HpyCH4III	ACNGT	5 cut(s)	43, 115, 867, 927, 943
HpyCH4IV	ACGT	3 cut(s)	380, 624, 696
HpyCH4V	TGCA	6 cut(s)	468, 595, 673, 685, 955, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 353, 515
HpyF3I	CTNAG	4 cut(s)	357, 646, 759, 838
HpySE526I	ACGT	3 cut(s)	380, 624, 696
Hsp92II	CATG	4 cut(s)	35, 406, 525, 689
KpnI	GGTACC	1 cut(s)	751
KspI	CCGCGG	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	208, 454
LmnI	GCTCC	4 cut(s)	56, 166, 176, 307
Lsp1109I	GCAGC	2 cut(s)	359, 530
LweI	GCATC	2 cut(s)	281, 624
MaeI	CTAG	2 cut(s)	98, 797
MaeII	ACGT	3 cut(s)	380, 624, 696
MaeIII	GTNAC	2 cut(s)	49, 280
MalI	GATC	2 cut(s)	210, 456
MboI	GATC	2 cut(s)	208, 454
MboII	GAAGA	5 cut(s)	9, 203, 539, 799, 1004
MhlI	GDGCHC	4 cut(s)	181, 312, 422, 839
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	5 cut(s)	461, 664, 726, 822, 1005
MluNI	TGGCCA	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	428
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	4 cut(s)	191, 363, 1002, 1015
MslI	CAYNNNNRTG	2 cut(s)	716, 917
Msp20I	TGGCCA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	79, 415
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	79, 415
MvnI	CGCG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	255, 353, 515
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	2 cut(s)	208, 454
NlaIII	CATG	4 cut(s)	35, 406, 525, 689
NlaIV	GGNNCC	6 cut(s)	124, 309, 408, 419, 420, 749
NspI	RCATGY	1 cut(s)	689
OliI	CACNNNNGTG	1 cut(s)	917
PceI	AGGCCT	1 cut(s)	677
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	440, 995
PflFI	GACNNNGTC	1 cut(s)	941
PflMI	CCANNNNNTGG	2 cut(s)	483, 715
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	346, 349, 520
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	77, 413
PspGI	CCWGG	2 cut(s)	77, 413
PspN4I	GGNNCC	6 cut(s)	124, 309, 408, 419, 420, 749
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	6 cut(s)	406, 418, 419, 584, 706, 964
PsyI	GACNNNGTC	1 cut(s)	941
RsaI	GTAC	6 cut(s)	401, 488, 635, 749, 818, 869
RsaNI	GTAC	6 cut(s)	400, 487, 634, 748, 817, 868
RseI	CAYNNNNRTG	2 cut(s)	716, 917
SacI	GAGCTC	1 cut(s)	181
SacII	CCGCGG	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	191, 363, 1002, 1015
SatI	GCNGC	3 cut(s)	345, 348, 519
Sau3AI	GATC	2 cut(s)	208, 454
Sau96I	GGNCC	6 cut(s)	406, 418, 419, 584, 706, 964
ScrFI	CCNGG	2 cut(s)	79, 415
SduI	GDGCHC	4 cut(s)	181, 312, 422, 839
SfaNI	GCATC	2 cut(s)	281, 624
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	406, 584
SmiMI	CAYNNNNRTG	2 cut(s)	716, 917
SmlI	CTYRAG	4 cut(s)	127, 170, 180, 629
SmoI	CTYRAG	4 cut(s)	127, 170, 180, 629
Sse9I	AATT	5 cut(s)	461, 664, 726, 822, 1005
SseBI	AGGCCT	1 cut(s)	677
SsiI	CCGC	4 cut(s)	312, 314, 344, 395
SspMI	CTAG	2 cut(s)	98, 797
SstI	GAGCTC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	677
StyD4I	CCNGG	2 cut(s)	77, 413
StyI	CCWWGG	2 cut(s)	31, 534
TaaI	ACNGT	5 cut(s)	43, 115, 867, 927, 943
TaiI	ACGT	3 cut(s)	383, 627, 699
TaqI	TCGA	2 cut(s)	435, 878
TasI	AATT	5 cut(s)	461, 664, 726, 822, 1005
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	440, 995
Tru1I	TTAA	4 cut(s)	191, 363, 1002, 1015
Tru9I	TTAA	4 cut(s)	191, 363, 1002, 1015
TscAI	CASTG	6 cut(s)	118, 510, 924, 932, 946, 981
TseI	GCWGC	2 cut(s)	347, 518
TspDTI	ATGAA	5 cut(s)	58, 453, 738, 761, 858
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	6 cut(s)	118, 510, 924, 932, 946, 981
Tth111I	GACNNNGTC	1 cut(s)	941
Van91I	CCANNNNNTGG	2 cut(s)	483, 715
VpaK11BI	GGWCC	2 cut(s)	406, 584
XagI	CCTNNNNNAGG	1 cut(s)	742
XapI	RAATTY	3 cut(s)	461, 726, 1005
XceI	RCATGY	1 cut(s)	689
XspI	CTAG	2 cut(s)	98, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.