Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

6376639 .. 6378580

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGGCGGCGAAGAGGACTCCCAAGGTTAACCGTAACCCTGACCTAATCAGGGGAGTTGGAAAATATTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGGCTATCAAGGCCAAGAACGGTGGCGTTTTCCCTCGTCACGATGCTCAGCCAAAGGTCGACGCTCCGGTTGAGAAGCCTGCCAAGTTTTATCCGGCGGAAGACGTCAAGAAGCCGCTTGTTAACAGACGCAAGCCTAAGCCTACCAAGCTAAAAGCCAGCATCACTCCAGGAACTGTGTTGATCATTCTTGCTGGTAGATTCAAGGGTAAGAGAGTTGTCTTCCTCAAGCAACTTTCTTCTGGTTTGCTTCTTGTAACAGGACCATTCAAGATTAATGGTGTTCCATTGAGACGTGTTAACCAAGCCTATGTGATTGGAACCTCCACAAAGATTGACATTTCTGGAGTCAACACTGAGAAATTCGATGACAAGTATTTTGGAAAGGTTGCTGAGAAGAAGAAGAAGAAAACAGAAGGCGAATTCTTCGAAGCTGAGAAAGAGGAGAAGAAGGAGATCCCACAGGAGAAGAAGGAAGACCAGAAAACCGTTGATGCTGCTCTGATCAAATCCATTGAAGCTGTCCCAGAGCTCAAGGTTTACCTTGGAGCCAGGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

233

Amino Acids

26.15

Weight (kDa)

10.09

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	4 - 61	9.5e-19	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	1.7e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	3 cut(s)	8, 200, 218
AclWI	GGATC	1 cut(s)	553
AcsI	RAATTY	2 cut(s)	464, 524
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	307, 373, 620
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	271, 653
AluBI	AGCT	5 cut(s)	253, 536, 623, 634, 691
AluI	AGCT	5 cut(s)	253, 536, 623, 634, 691
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	81, 388
AlwI	GGATC	1 cut(s)	553
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	464, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	3 cut(s)	210, 316, 585
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	273, 655
BclI	TGATCA	2 cut(s)	285, 606
BcoDI	GTCTC	2 cut(s)	81, 388
BfaI	CTAG	1 cut(s)	700
BisI	GCNGC	3 cut(s)	9, 218, 600
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	3 cut(s)	10, 219, 601
Bme1390I	CCNGG	2 cut(s)	273, 655
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	424, 652
BmrFI	CCNGG	2 cut(s)	273, 655
BmsI	GCATC	3 cut(s)	136, 273, 586
BpiI	GAAGAC	3 cut(s)	210, 316, 585
BpmI	CTGGAG	2 cut(s)	255, 468
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	314, 620
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	24, 646
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	2 cut(s)	273, 655
BseDI	CCNNGG	2 cut(s)	24, 646
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	5 cut(s)	92, 164, 450, 486, 528
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	586
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	3 cut(s)	5, 170, 197
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	81, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	81
Bsp119I	TTCGAA	1 cut(s)	531
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	3 cut(s)	285, 558, 606
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	8, 200, 218
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	5 cut(s)	91, 163, 451, 487, 529
BspLI	GGNNCC	2 cut(s)	424, 652
BspPI	GGATC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	24, 646
BssMI	GATC	3 cut(s)	285, 558, 606
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	24, 646
Bst2UI	CCWGG	2 cut(s)	273, 655
Bst4CI	ACNGT	4 cut(s)	35, 125, 280, 592
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	531
BstC8I	GCNNGC	4 cut(s)	6, 183, 236, 262
BstDEI	CTNAG	6 cut(s)	78, 150, 240, 459, 495, 537
BstKTI	GATC	3 cut(s)	288, 561, 609
BstMAI	GTCTC	2 cut(s)	81, 388
BstMBI	GATC	3 cut(s)	285, 558, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 250
BstNI	CCWGG	2 cut(s)	273, 655
BstSCI	CCNGG	2 cut(s)	271, 653
BstV1I	GCAGC	1 cut(s)	586
BstV2I	GAAGAC	3 cut(s)	210, 316, 585
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	4 cut(s)	6, 183, 236, 262
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	2 cut(s)	173, 240
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	4 cut(s)	106, 141, 418, 453
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	6 cut(s)	78, 150, 240, 459, 495, 537
DpnI	GATC	3 cut(s)	287, 560, 608
DpnII	GATC	3 cut(s)	285, 558, 606
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	2 cut(s)	24, 646
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	271, 653
EcoT14I	CCWWGG	2 cut(s)	24, 646
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	24, 646
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	689
FaiI	YATR	2 cut(s)	414, 687
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	1 cut(s)	685
FbaI	TGATCA	2 cut(s)	285, 606
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	9, 218, 600
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	3 cut(s)	9, 218, 600
FspBI	CTAG	1 cut(s)	700
GluI	GCNGC	3 cut(s)	9, 218, 600
GsuI	CTGGAG	2 cut(s)	255, 468
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	3 cut(s)	5, 170, 197
HgaI	GACGC	2 cut(s)	173, 240
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	689
HincII	GTYRAC	5 cut(s)	31, 163, 226, 403, 454
HindII	GTYRAC	5 cut(s)	31, 163, 226, 403, 454
HinfI	GANTC	4 cut(s)	19, 303, 450, 667
HpaI	GTTAAC	3 cut(s)	31, 226, 403
HpaII	CCGG	3 cut(s)	5, 170, 197
Hpy166II	GTNNAC	6 cut(s)	31, 163, 226, 403, 454, 643
Hpy188I	TCNGA	2 cut(s)	81, 606
Hpy188III	TCNNGA	4 cut(s)	143, 211, 373, 447
Hpy8I	GTNNAC	6 cut(s)	31, 163, 226, 403, 454, 643
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	512, 547, 568
HpyCH4III	ACNGT	4 cut(s)	35, 125, 280, 592
HpyCH4IV	ACGT	2 cut(s)	207, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 250
HpyF3I	CTNAG	6 cut(s)	78, 150, 240, 459, 495, 537
HpySE526I	ACGT	2 cut(s)	207, 397
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	689
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	2 cut(s)	285, 606
KspAI	GTTAAC	3 cut(s)	31, 226, 403
Kzo9I	GATC	3 cut(s)	285, 558, 606
LmnI	GCTCC	2 cut(s)	172, 650
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	3 cut(s)	136, 273, 586
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	2 cut(s)	207, 397
MaeIII	GTNAC	3 cut(s)	35, 140, 358
MalI	GATC	3 cut(s)	287, 560, 608
MboI	GATC	3 cut(s)	285, 558, 606
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	2 cut(s)	464, 524
MlyI	GAGTC	3 cut(s)	13, 459, 676
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	7 cut(s)	9, 66, 89, 147, 338, 436, 538
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	4 cut(s)	30, 225, 378, 402
MspI	CCGG	3 cut(s)	5, 170, 197
MspR9I	CCNGG	2 cut(s)	273, 655
MvaI	CCWGG	2 cut(s)	273, 655
MwoI	GCNNNNNNNGC	2 cut(s)	113, 250
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	3 cut(s)	285, 558, 606
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	2 cut(s)	424, 652
NmuCI	GTSAC	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	531
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	10, 219, 601
PleI	GAGTC	3 cut(s)	13, 458, 675
PpsI	GAGTC	3 cut(s)	13, 458, 675
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	271, 653
PspGI	CCWGG	2 cut(s)	271, 653
PspN4I	GGNNCC	2 cut(s)	424, 652
PspPI	GGNCC	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	636
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	30, 225, 378, 402
SatI	GCNGC	3 cut(s)	9, 218, 600
Sau3AI	GATC	3 cut(s)	285, 558, 606
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	3 cut(s)	13, 459, 676
ScrFI	CCNGG	2 cut(s)	273, 655
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	3 cut(s)	136, 273, 586
SfuI	TTCGAA	1 cut(s)	531
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	329, 635
SmoI	CTYRAG	2 cut(s)	329, 635
Sse9I	AATT	2 cut(s)	464, 524
SsiI	CCGC	3 cut(s)	8, 200, 218
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	1 cut(s)	700
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	271, 653
StyI	CCWWGG	2 cut(s)	24, 646
TaaI	ACNGT	4 cut(s)	35, 125, 280, 592
TaiI	ACGT	2 cut(s)	210, 400
TaqI	TCGA	4 cut(s)	71, 162, 468, 531
TasI	AATT	2 cut(s)	464, 524
TauI	GCSGC	2 cut(s)	11, 220
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	4 cut(s)	30, 225, 378, 402
Tru9I	TTAA	4 cut(s)	30, 225, 378, 402
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	464, 524
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	1 cut(s)	700
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.