Prupe.6G171700_v2.0.a1

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002002
Physical Location & Seq
Forward (+)
17689380 .. 17692150
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G171700.1

Sequence Viewer

Length: 702 bp
ATGGCGGCAAAAGCTAGACTTCCCAGAAAGACTCGAAACCCAGATCTGATTCGTGGGGTGGGCAAGTTCTCCAGGTCCAAGATGTACCACAAGCGCGGCCTTTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTTCCCCGCCATGACCCGAAGCCAACGGCTGAGACCGGGCCGGAAAAGGTCCCCAAGTTCTACCCTGCCGATGACGTCAAGAAGCCGCTCGTCAACAAGCGCAAGCTCAAGCCTACCAAGCTCAGGGCTAGTGTTACACCAGGTACGGTGTTGATTATATTGGCGGGAAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGCAGCTTCCATCTGGGTTGCTTCTCGTTACTGGGCCATTCAAAATTAATGGTGTTCCTTTGAGACGCGTGAACCAGTCCTATGTGATTGCCACTTCCACCAAGGTTGACATTTCTGGGGTGAATGTCGAGAAGTTTGATGACAAATACTTTGCAAAGCAAGTGGAGAAGAAGAAAAATAAGGGAGGGAGAGAATTTTTTGAGGCAGAGAAAGAGGAAAAGAATGTGTTCCCACAAGAAAAGAAAGATGATCAGAAAAGTGTGGATGCCTCATTGATAAAGTCGATTGACGCTGTCCCAGACTTGAAGACATACTTAGCAGCGAGATTCTCTCTTAAGTCAGGCATGAAGCCTCACGAGCTTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.19

Weight (kDa)

10.29

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 220
AccII CGCG 2 cut(s) 96, 399
AciI CCGC 6 cut(s) 5, 96, 126, 139, 218, 296
AcsI RAATTY 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 86, 277
AfiI CCNNNNNNNGG 1 cut(s) 255
AflII CTTAAG 2 cut(s) 329, 665
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 2 cut(s) 373, 637
AjnI CCWGG 2 cut(s) 71, 271
AluBI AGCT 5 cut(s) 14, 238, 253, 337, 691
AluI AGCT 5 cut(s) 14, 238, 253, 337, 691
Alw26I GTCTC 2 cut(s) 158, 388
AoxI GGCC 5 cut(s) 97, 105, 114, 170, 365
ApeKI GCWGC 2 cut(s) 334, 650
ApoI RAATTY 1 cut(s) 524
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AseI ATTAAT 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 2 cut(s) 96, 234
AspS9I GGNCC 5 cut(s) 75, 105, 170, 181, 365
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 2 cut(s) 75, 181
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 644
BbvI GCAGC 2 cut(s) 346, 662
BccI CCATC 2 cut(s) 116, 349
BceAI ACGGC 2 cut(s) 139, 174
BciT130I CCWGG 2 cut(s) 73, 273
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 158, 388
BfaI CTAG 2 cut(s) 15, 261
BfrI CTTAAG 2 cut(s) 329, 665
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 1 cut(s) 43
BisI GCNGC 6 cut(s) 6, 97, 127, 218, 335, 651
BlsI GCNGC 6 cut(s) 7, 98, 128, 219, 336, 652
Bme1390I CCNGG 3 cut(s) 73, 169, 273
Bme18I GGWCC 2 cut(s) 75, 181
BmgT120I GGNCC 5 cut(s) 75, 105, 170, 181, 365
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 3 cut(s) 73, 169, 273
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 644
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 367, 406
BseBI CCWGG 2 cut(s) 73, 273
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 153, 268
BseNI ACTGG 2 cut(s) 367, 406
BseXI GCAGC 2 cut(s) 346, 662
Bsh1236I CGCG 2 cut(s) 96, 399
BshFI GGCC 5 cut(s) 99, 107, 116, 172, 367
BsiSI CCGG 2 cut(s) 168, 173
BslFI GGGAC 2 cut(s) 167, 611
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 158, 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 167, 611
BsnI GGCC 5 cut(s) 99, 107, 116, 172, 367
Bso31I GGTCTC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 43, 580
BspACI CCGC 6 cut(s) 5, 96, 126, 139, 218, 296
BspANI GGCC 5 cut(s) 99, 107, 116, 172, 367
BspCNI CTCAG 2 cut(s) 154, 267
BspFNI CGCG 2 cut(s) 96, 399
BspLI GGNNCC 1 cut(s) 183
BspTI CTTAAG 2 cut(s) 329, 665
BspTNI GGTCTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 220
BsrI ACTGG 2 cut(s) 367, 406
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 2 cut(s) 43, 580
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 2 cut(s) 73, 273
Bst4CI ACNGT 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 2 cut(s) 329, 665
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 162, 254, 646
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 2 cut(s) 96, 399
BstHHI GCGC 2 cut(s) 96, 234
BstKTI GATC 2 cut(s) 46, 583
BstMAI GTCTC 2 cut(s) 158, 388
BstMBI GATC 2 cut(s) 43, 580
BstMWI GCNNNNNNNGC 4 cut(s) 11, 113, 250, 688
BstNI CCWGG 2 cut(s) 73, 273
BstSCI CCNGG 3 cut(s) 71, 167, 271
BstUI CGCG 2 cut(s) 96, 399
BstV1I GCAGC 2 cut(s) 346, 662
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 5 cut(s) 99, 107, 116, 172, 367
BtsCI GGATG 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 236
CfoI GCGC 2 cut(s) 96, 234
Cfr13I GGNCC 5 cut(s) 75, 105, 170, 181, 365
CseI GACGC 2 cut(s) 405, 629
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 2 cut(s) 85, 276
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 474, 509
CviAII CATG 2 cut(s) 143, 676
CviQI GTAC 2 cut(s) 85, 276
DdeI CTNAG 3 cut(s) 162, 254, 646
DpnI GATC 2 cut(s) 45, 582
DpnII GATC 2 cut(s) 43, 580
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 75, 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 71, 271
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 2 cut(s) 146, 679
FaiI YATR 5 cut(s) 144, 290, 414, 643, 677
FalI AAGNNNNNCTT 3 cut(s) 35, 629, 661
FaqI GGGAC 2 cut(s) 167, 611
FatI CATG 2 cut(s) 142, 675
FauI CCCGC 2 cut(s) 146, 289
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 6 cut(s) 6, 97, 127, 218, 335, 651
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 6 cut(s) 6, 97, 127, 218, 335, 651
FspBI CTAG 2 cut(s) 15, 261
GlaI GCGC 2 cut(s) 95, 233
GluI GCNGC 6 cut(s) 6, 97, 127, 218, 335, 651
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 5 cut(s) 99, 107, 116, 172, 367
HapII CCGG 2 cut(s) 168, 173
HgaI GACGC 2 cut(s) 405, 629
HhaI GCGC 2 cut(s) 96, 234
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 2 cut(s) 146, 679
Hin6I GCGC 2 cut(s) 94, 232
HinP1I GCGC 2 cut(s) 94, 232
HincII GTYRAC 2 cut(s) 226, 439
HindII GTYRAC 2 cut(s) 226, 439
HinfI GANTC 3 cut(s) 31, 49, 657
HpaII CCGG 2 cut(s) 168, 173
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 226, 403, 439
Hpy188I TCNGA 2 cut(s) 48, 585
Hpy188III TCNNGA 3 cut(s) 211, 460, 686
Hpy8I GTNNAC 3 cut(s) 226, 403, 439
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 113, 250, 688
HpyF3I CTNAG 3 cut(s) 162, 254, 646
HpySE526I ACGT 1 cut(s) 207
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 2 cut(s) 146, 679
HspAI GCGC 2 cut(s) 94, 232
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 2 cut(s) 43, 580
Lsp1109I GCAGC 2 cut(s) 346, 662
LweI GCATC 1 cut(s) 586
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 2 cut(s) 15, 261
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 265, 358
MalI GATC 2 cut(s) 45, 582
MbiI CCGCTC 1 cut(s) 220
MboI GATC 2 cut(s) 43, 580
MboII GAAGA 3 cut(s) 511, 514, 649
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 375, 524
MluI ACGCGT 1 cut(s) 397
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 5 cut(s) 509, 526, 538, 610, 693
MroXI GAANNNNTTC 1 cut(s) 557
MseI TTAA 4 cut(s) 306, 330, 378, 666
MspCI CTTAAG 2 cut(s) 329, 665
MspI CCGG 2 cut(s) 168, 173
MspR9I CCNGG 3 cut(s) 73, 169, 273
MvaI CCWGG 2 cut(s) 73, 273
MvnI CGCG 2 cut(s) 96, 399
MwoI GCNNNNNNNGC 4 cut(s) 11, 113, 250, 688
NciI CCSGG 1 cut(s) 169
NdeII GATC 2 cut(s) 43, 580
NlaIII CATG 2 cut(s) 146, 679
NlaIV GGNNCC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 2 cut(s) 49, 657
PflFI GACNNNGTC 1 cut(s) 623
PkrI GCNGC 6 cut(s) 7, 98, 128, 219, 336, 652
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PpuMI RGGWCCY 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 71, 271
PspGI CCWGG 2 cut(s) 71, 271
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 5 cut(s) 75, 105, 170, 181, 365
PspPPI RGGWCCY 1 cut(s) 181
PsuI RGATCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 623
RsaI GTAC 2 cut(s) 86, 277
RsaNI GTAC 2 cut(s) 85, 276
SaqAI TTAA 4 cut(s) 306, 330, 378, 666
SatI GCNGC 6 cut(s) 6, 97, 127, 218, 335, 651
Sau3AI GATC 2 cut(s) 43, 580
Sau96I GGNCC 5 cut(s) 75, 105, 170, 181, 365
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 73, 169, 273
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 1 cut(s) 586
SfiI GGCCNNNNNGGCC 1 cut(s) 113
SinI GGWCC 2 cut(s) 75, 181
SmlI CTYRAG 3 cut(s) 239, 329, 665
SmoI CTYRAG 3 cut(s) 239, 329, 665
Sse9I AATT 2 cut(s) 375, 524
SsiI CCGC 6 cut(s) 5, 96, 126, 139, 218, 296
SspMI CTAG 2 cut(s) 15, 261
StyD4I CCNGG 3 cut(s) 71, 167, 271
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 34, 459, 614
TasI AATT 2 cut(s) 375, 524
TauI GCSGC 4 cut(s) 8, 99, 129, 220
TfiI GAWTC 2 cut(s) 49, 657
Tru1I TTAA 4 cut(s) 306, 330, 378, 666
Tru9I TTAA 4 cut(s) 306, 330, 378, 666
TseI GCWGC 2 cut(s) 334, 650
TspDTI ATGAA 1 cut(s) 692
Tth111I GACNNNGTC 1 cut(s) 623
Vha464I CTTAAG 2 cut(s) 329, 665
VpaK11BI GGWCC 2 cut(s) 75, 181
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 2 cut(s) 15, 261
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.