Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

37115519 .. 37118907

Gene Structure 3389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1316700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCCGAAGCAGAGGACTCCAAAGGTGACCAGAAACCCAGATCTGATCAGAGGGATTGGGAAATACTCGAGGTCCAAGATGTACCACAAGCGAGGGCTCTGGGCTATCAAGGCCAAGAACGGCGGTGCTTTCCCATGCCACGAAAAGAAGCCCGCCGCCGACGCCCCGGCTGTAAAGCCGCCCAAGTTTTACCCCGCCGACGATGTCAAGAAGCCTCTCGTCAACAAGCGCAAGCCCAAGGCCACAAAACTCAGGGCTAGCATTACTCCTGGAACTGTGTTAATCATTCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTTTGAAGCAGCTTTCATCTGGCTTGCTTTTGGTCACTGGACCATTCAAGATTAACGGTGTTCCTCTAAGACGTGTGAACCAATCTTACGTTATTGGAACTTCAACTAAGATTGACATCTCTGGGGTTAATGTTGATAAATTTGATGACAAGTATTTTGCAAAGGAAGTTCAGAAGAAAAAGAAGAAGGGAGAAGGCGAATTCTTTGAAGCGGAAAAGGAGGACAAAAATGTACTTCCCCAGGAGAAAAAAGAAGACCAGAAGGCTGTTGATACACCCTTGGTTAATTGCATCGACAAAATTGCAGATTTGAAGACTTATTTGGCTGCAAGGTTCTCTCTCAAGCAAGGCATGAAGCCTCATGAGCTTGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.1

Weight (kDa)

10.1

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	2e-16	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	1.3e-39	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	6 cut(s)	126, 156, 159, 182, 198, 536
AcsI	RAATTY	2 cut(s)	464, 524
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	2 cut(s)	86, 558
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	6 cut(s)	307, 331, 373, 429, 533, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	271, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	2 cut(s)	337, 691
AluI	AGCT	2 cut(s)	337, 691
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	114, 243
ApeKI	GCWGC	2 cut(s)	334, 650
ApoI	RAATTY	2 cut(s)	464, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	2 cut(s)	7, 234
AspS9I	GGNCC	2 cut(s)	75, 365
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	75, 365
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	2 cut(s)	585, 644
BbvI	GCAGC	2 cut(s)	346, 637
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	2 cut(s)	273, 566
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	170
BfaI	CTAG	2 cut(s)	261, 700
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	4 cut(s)	159, 182, 335, 651
BlsI	GCNGC	4 cut(s)	160, 183, 336, 652
Bme1390I	CCNGG	3 cut(s)	170, 273, 566
Bme18I	GGWCC	2 cut(s)	75, 365
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	75, 365
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	170, 273, 566
BmsI	GCATC	1 cut(s)	624
BmtI	GCTAGC	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	585, 644
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	4 cut(s)	168, 240, 564, 603
Bse1I	ACTGG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	273, 566
BseDI	CCNNGG	4 cut(s)	168, 240, 564, 603
BseJI	GATNNNNATC	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	346, 637
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	2 cut(s)	116, 245
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	170
BsnI	GGCC	2 cut(s)	116, 245
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	43, 48
BspACI	CCGC	6 cut(s)	126, 156, 159, 182, 198, 536
BspANI	GGCC	2 cut(s)	116, 245
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	4 cut(s)	168, 240, 564, 603
BssMI	GATC	2 cut(s)	43, 48
BssNI	GRCGYC	2 cut(s)	5, 165
BssT1I	CCWWGG	2 cut(s)	240, 603
Bst2UI	CCWGG	2 cut(s)	273, 566
Bst4CI	ACNGT	2 cut(s)	280, 383
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	2 cut(s)	5, 165
BstC8I	GCNNGC	4 cut(s)	156, 236, 262, 350
BstDEI	CTNAG	3 cut(s)	254, 392, 432
BstEII	GGTNACC	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 234
BstKTI	GATC	2 cut(s)	46, 51
BstMBI	GATC	2 cut(s)	43, 48
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 164, 688
BstNI	CCWGG	2 cut(s)	273, 566
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	168, 271, 564
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	2 cut(s)	585, 644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	116, 245
BtrI	CACGTC	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	4 cut(s)	156, 236, 262, 350
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	7, 234
Cfr13I	GGNCC	2 cut(s)	75, 365
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	85, 557
CviAII	CATG	3 cut(s)	138, 676, 686
CviQI	GTAC	2 cut(s)	85, 557
DdeI	CTNAG	3 cut(s)	254, 392, 432
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	45, 50
DpnII	GATC	2 cut(s)	43, 48
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	240, 603
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	75, 365
Eco88I	CYCGRG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	271, 564
EcoT14I	CCWWGG	2 cut(s)	240, 603
EcoT38I	GRGCYC	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	240, 603
FaeI	CATG	3 cut(s)	141, 679, 689
FaiI	YATR	3 cut(s)	139, 677, 687
FatI	CATG	3 cut(s)	137, 675, 685
FauI	CCCGC	2 cut(s)	163, 205
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	159, 182, 335, 651
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	4 cut(s)	159, 182, 335, 651
FspBI	CTAG	2 cut(s)	261, 700
GlaI	GCGC	2 cut(s)	6, 233
GluI	GCNGC	4 cut(s)	159, 182, 335, 651
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	116, 245
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	7, 234
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	3 cut(s)	141, 679, 689
Hin6I	GCGC	2 cut(s)	5, 232
HinP1I	GCGC	2 cut(s)	5, 232
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	226, 403
Hpy188I	TCNGA	3 cut(s)	48, 53, 498
Hpy188III	TCNNGA	3 cut(s)	211, 373, 686
Hpy8I	GTNNAC	2 cut(s)	226, 403
Hpy99I	CGWCG	2 cut(s)	167, 206
HpyAV	CCTTC	3 cut(s)	505, 512, 580
HpyCH4III	ACNGT	2 cut(s)	280, 383
HpyCH4IV	ACGT	2 cut(s)	397, 414
HpyCH4V	TGCA	4 cut(s)	485, 615, 629, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 164, 688
HpyF3I	CTNAG	3 cut(s)	254, 392, 432
HpySE526I	ACGT	2 cut(s)	397, 414
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	3 cut(s)	141, 679, 689
HspAI	GCGC	2 cut(s)	5, 232
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	43, 48
Lsp1109I	GCAGC	2 cut(s)	346, 637
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	261, 700
MaeII	ACGT	2 cut(s)	397, 414
MaeIII	GTNAC	2 cut(s)	28, 358
MalI	GATC	2 cut(s)	45, 50
MboI	GATC	2 cut(s)	43, 48
MboII	GAAGA	5 cut(s)	325, 511, 520, 590, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	464, 524, 610, 624
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	9, 47, 66, 89, 228, 294, 399, 538, 693
MseI	TTAA	4 cut(s)	284, 378, 453, 609
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	170, 273, 566
MvaI	CCWGG	2 cut(s)	273, 566
MwoI	GCNNNNNNNGC	3 cut(s)	113, 164, 688
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	43, 48
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	141, 679, 689
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	28, 358
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PflFI	GACNNNGTC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	4 cut(s)	160, 183, 336, 652
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	271, 564
PspEI	GGTNACC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	271, 564
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	75, 365
PspXI	VCTCGAGB	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	86, 558
RsaNI	GTAC	2 cut(s)	85, 557
SaqAI	TTAA	4 cut(s)	284, 378, 453, 609
SatI	GCNGC	4 cut(s)	159, 182, 335, 651
Sau3AI	GATC	2 cut(s)	43, 48
Sau96I	GGNCC	2 cut(s)	75, 365
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	170, 273, 566
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	30, 77, 305, 339, 400, 417, 659, 693
SfaNI	GCATC	1 cut(s)	624
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	75, 365
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 665
SmoI	CTYRAG	2 cut(s)	70, 665
Sse9I	AATT	4 cut(s)	464, 524, 610, 624
SsiI	CCGC	6 cut(s)	126, 156, 159, 182, 198, 536
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	261, 700
StyD4I	CCNGG	3 cut(s)	168, 271, 564
StyI	CCWWGG	2 cut(s)	240, 603
TaaI	ACNGT	2 cut(s)	280, 383
TaiI	ACGT	2 cut(s)	400, 417
TaqI	TCGA	2 cut(s)	71, 618
TasI	AATT	4 cut(s)	464, 524, 610, 624
TatI	WGTACW	1 cut(s)	556
TauI	GCSGC	2 cut(s)	161, 184
Tru1I	TTAA	4 cut(s)	284, 378, 453, 609
Tru9I	TTAA	4 cut(s)	284, 378, 453, 609
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	28, 358
TseI	GCWGC	2 cut(s)	334, 650
Tsp45I	GTSAC	2 cut(s)	28, 358
TspDTI	ATGAA	2 cut(s)	330, 692
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	2 cut(s)	75, 365
XapI	RAATTY	2 cut(s)	464, 524
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	2 cut(s)	261, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.