Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

11043000 .. 11045407

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G072900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGCAAAAGCAAGAAACCCCAGGAAGACCCGAAACCCAGATCTGGTTCGTGGGGTGGGTAAGTTCTCGAGGTCCAAGATGTACCACAAGCGTGGTCTTTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCACGCCATGACGCGAAGCCAGCGGCTGTGACCCAACCCCAGAAGCCGCCCAAGTTCTATCCTGCCGATGACGTCAAGAAGCCGCTTGTCAACAAGCGCAAGGCTAAGCCCACCAAGCTCAGGGCTAGTATTACACCAGGGACTGTGTTGATTATATTGGCTGGAAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGCAGCTCCCATCTGGGTTGCTTCTTGTTACTGGGCCCTTCAAAATTAATGGTGTTCCTTTGAGACGTGTGAATCAGGCCTATGTGATTGGCACTTCCACCAAGGTTGACATTTCTGGGGTGAATGTAGAAAAGTTTGATGACAAATATTTTGCAAAGGAAGTTGAAAAGAAGAAGAAGAAGGGGGAGGGAGAATTTTTTGAGGCAGAGAAAGAGGAAAAGAATGTGATCCCGCAAGGAAAGAAGGATGATCAGAAGAGTGTTGATGCTTCATTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTGGCGGCAAGATTCTCTCTTAAGTCAGGCATGAAGCCTCATGAGCTCGTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

25.99

Weight (kDa)

10.3

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	149
AciI	CCGC	7 cut(s)	5, 126, 158, 182, 218, 563, 650
AclWI	GGATC	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	46, 255
AflII	CTTAAG	2 cut(s)	329, 665
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	373, 497, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	23, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	553
AlwNI	CAGNNNCTG	2 cut(s)	161, 278
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	4 cut(s)	105, 114, 365, 408
ApaI	GGGCCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	4 cut(s)	75, 105, 365, 366
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	369
BanII	GRGCYC	2 cut(s)	369, 693
BauI	CACGAG	1 cut(s)	692
BbsI	GAAGAC	2 cut(s)	35, 644
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	116, 349
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	25, 273
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	261
BfrI	CTTAAG	2 cut(s)	329, 665
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	7 cut(s)	6, 127, 159, 182, 218, 335, 651
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	7 cut(s)	7, 128, 160, 183, 219, 336, 652
Bme1390I	CCNGG	2 cut(s)	25, 273
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	4 cut(s)	75, 105, 365, 366
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	2 cut(s)	25, 273
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	35, 644
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	23, 272, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 255
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	25, 273
BseDI	CCNNGG	3 cut(s)	23, 272, 432
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	2 cut(s)	46, 255
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	4 cut(s)	107, 116, 367, 410
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	2 cut(s)	46, 255
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	4 cut(s)	107, 116, 367, 410
BsoBI	CYCGRG	1 cut(s)	70
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	369, 693
Bsp143I	GATC	3 cut(s)	43, 558, 580
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	7 cut(s)	5, 126, 158, 182, 218, 563, 650
BspANI	GGCC	4 cut(s)	107, 116, 367, 410
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	553
BspTI	CTTAAG	2 cut(s)	329, 665
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	23, 272, 432
BssMI	GATC	3 cut(s)	43, 558, 580
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	25, 273
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	2 cut(s)	329, 665
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	240, 254
BstF5I	GGATG	1 cut(s)	583
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	3 cut(s)	46, 561, 583
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	43, 558, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 250, 688
BstNI	CCWGG	2 cut(s)	25, 273
BstSCI	CCNGG	2 cut(s)	23, 271
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	2 cut(s)	35, 644
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	107, 116, 367, 410
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	156
CaiI	CAGNNNCTG	2 cut(s)	161, 278
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	75, 105, 365, 366
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	3 cut(s)	143, 676, 686
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	240, 254
DpnI	GATC	3 cut(s)	45, 560, 582
DpnII	GATC	3 cut(s)	43, 558, 580
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	369, 693
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	691
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	23, 271
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	369, 693
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	146, 679, 689
FaiI	YATR	6 cut(s)	144, 290, 414, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	3 cut(s)	142, 675, 685
FauI	CCCGC	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	7 cut(s)	6, 127, 159, 182, 218, 335, 651
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	2 cut(s)	369, 693
Fsp4HI	GCNGC	7 cut(s)	6, 127, 159, 182, 218, 335, 651
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	7 cut(s)	6, 127, 159, 182, 218, 335, 651
HaeIII	GGCC	4 cut(s)	107, 116, 367, 410
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	146, 679, 689
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HinfI	GANTC	2 cut(s)	403, 657
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	3 cut(s)	70, 211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
HpyAV	CCTTC	4 cut(s)	294, 379, 505, 568
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	207, 397
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 250, 688
HpyF3I	CTNAG	2 cut(s)	240, 254
HpySE526I	ACGT	2 cut(s)	207, 397
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	146, 679, 689
HspAI	GCGC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	43, 558, 580
LmnI	GCTCC	1 cut(s)	342
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	207, 397
MaeIII	GTNAC	2 cut(s)	163, 358
MalI	GATC	3 cut(s)	45, 560, 582
MboI	GATC	3 cut(s)	43, 558, 580
MboII	GAAGA	6 cut(s)	40, 514, 517, 520, 598, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	369, 693
MluCI	AATT	2 cut(s)	375, 524
MnlI	CCTC	6 cut(s)	66, 511, 526, 538, 613, 693
MseI	TTAA	4 cut(s)	306, 330, 378, 666
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	2 cut(s)	329, 665
MspR9I	CCNGG	2 cut(s)	25, 273
MvaI	CCWGG	2 cut(s)	25, 273
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 250, 688
NdeII	GATC	3 cut(s)	43, 558, 580
NlaIII	CATG	3 cut(s)	146, 679, 689
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	403, 657
PkrI	GCNGC	7 cut(s)	7, 128, 160, 183, 219, 336, 652
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	23, 271
PspGI	CCWGG	2 cut(s)	23, 271
PspN4I	GGNNCC	1 cut(s)	367
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	4 cut(s)	75, 105, 365, 366
PstNI	CAGNNNCTG	2 cut(s)	161, 278
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	306, 330, 378, 666
SatI	GCNGC	7 cut(s)	6, 127, 159, 182, 218, 335, 651
Sau3AI	GATC	3 cut(s)	43, 558, 580
Sau96I	GGNCC	4 cut(s)	75, 105, 365, 366
ScrFI	CCNGG	2 cut(s)	25, 273
SduI	GDGCHC	2 cut(s)	369, 693
SetI	ASST	8 cut(s)	77, 210, 255, 305, 339, 400, 438, 693
SfaNI	GCATC	1 cut(s)	586
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	70, 329, 665
SmoI	CTYRAG	3 cut(s)	70, 329, 665
Sse9I	AATT	2 cut(s)	375, 524
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	7 cut(s)	5, 126, 158, 182, 218, 563, 650
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	693
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	23, 271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	210, 400
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	375, 524
TauI	GCSGC	6 cut(s)	8, 129, 161, 184, 220, 653
TfiI	GAWTC	2 cut(s)	403, 657
Tru1I	TTAA	4 cut(s)	306, 330, 378, 666
Tru9I	TTAA	4 cut(s)	306, 330, 378, 666
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	591, 692
Vha464I	CTTAAG	2 cut(s)	329, 665
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.