Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

27847038 .. 27849008

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCCGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGGGGTGTTGGTAAATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGCCAAAAATGGAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGAGAAGCCACCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGCACGGCAAAACCAACCAAGCTCAGAGCTAGCATTACTCCAGGTACAGTGTTGATTATCCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGGCCTATGTGATTGGCACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCGATGATAAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAAGGAGAGTTCTTTGAGGCTGAGAAAGAGGAGAAGAAGGAGATCCCACAGGTGAAGAAAGATGACCAGAAAGCTGTGGATGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTTGGCGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

233

Amino Acids

26.11

Weight (kDa)

10.18

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	3.2e-19	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	3.1e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	69, 553
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	86, 277, 479
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	5 cut(s)	307, 373, 620, 637, 667
AjiI	CACGTC	2 cut(s)	140, 398
AjnI	CCWGG	2 cut(s)	271, 405
AluBI	AGCT	7 cut(s)	200, 253, 260, 337, 590, 602, 691
AluI	AGCT	7 cut(s)	200, 253, 260, 337, 590, 602, 691
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	69, 553
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	114, 408
ApeKI	GCWGC	2 cut(s)	334, 599
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	234, 653
AspS9I	GGNCC	2 cut(s)	18, 365
AsuHPI	GGTGA	2 cut(s)	445, 580
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	18, 365
BbsI	GAAGAC	3 cut(s)	316, 518, 644
BbvI	GCAGC	2 cut(s)	346, 611
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	273, 407
BclI	TGATCA	2 cut(s)	48, 606
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	261, 700
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	335, 600
BlsI	GCNGC	2 cut(s)	336, 601
BmcAI	AGTACT	1 cut(s)	479
Bme1390I	CCNGG	2 cut(s)	273, 407
Bme18I	GGWCC	2 cut(s)	18, 365
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	2 cut(s)	140, 398
BmgT120I	GGNCC	2 cut(s)	18, 365
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	273, 407
BmsI	GCATC	2 cut(s)	154, 586
BmtI	GCTAGC	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	316, 518, 644
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	2 cut(s)	255, 468
BsaJI	CCNNGG	1 cut(s)	646
BsaWI	WCCGGW	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	273, 407
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	1 cut(s)	601
BseMII	CTCAG	3 cut(s)	268, 486, 528
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	346, 611
BshFI	GGCC	2 cut(s)	116, 410
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	5, 170
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	116, 410
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
BspANI	GGCC	2 cut(s)	116, 410
BspCNI	CTCAG	3 cut(s)	267, 487, 529
BspLI	GGNNCC	1 cut(s)	20
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	69, 553
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	273, 407
Bst4CI	ACNGT	1 cut(s)	280
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	6, 262, 339
BstDEI	CTNAG	4 cut(s)	156, 254, 495, 537
BstF5I	GGATG	1 cut(s)	601
BstHHI	GCGC	2 cut(s)	234, 653
BstKTI	GATC	6 cut(s)	46, 51, 77, 378, 561, 609
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 596, 620, 688
BstNI	CCWGG	2 cut(s)	273, 407
BstSCI	CCNGG	2 cut(s)	271, 405
BstV1I	GCAGC	2 cut(s)	346, 611
BstV2I	GAAGAC	3 cut(s)	316, 518, 644
BstX2I	RGATCY	2 cut(s)	74, 558
BstYI	RGATCY	2 cut(s)	74, 558
BsuRI	GGCC	2 cut(s)	116, 410
BtrI	CACGTC	2 cut(s)	140, 398
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	6, 262, 339
CfoI	GCGC	2 cut(s)	234, 653
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	18, 365
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	85, 276, 478
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	3 cut(s)	85, 276, 478
DdeI	CTNAG	4 cut(s)	156, 254, 495, 537
DpnI	GATC	6 cut(s)	45, 50, 76, 377, 560, 608
DpnII	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	18, 365
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	271, 405
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	689
FaiI	YATR	3 cut(s)	90, 414, 687
FatI	CATG	1 cut(s)	685
FbaI	TGATCA	2 cut(s)	48, 606
Fnu4HI	GCNGC	2 cut(s)	335, 600
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	335, 600
FspBI	CTAG	2 cut(s)	261, 700
GlaI	GCGC	2 cut(s)	233, 652
GluI	GCNGC	2 cut(s)	335, 600
GsuI	CTGGAG	2 cut(s)	255, 468
HaeIII	GGCC	2 cut(s)	116, 410
HapII	CCGG	2 cut(s)	5, 170
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	234, 653
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	2 cut(s)	232, 651
HinP1I	GCGC	2 cut(s)	232, 651
HincII	GTYRAC	3 cut(s)	31, 403, 439
HindII	GTYRAC	3 cut(s)	31, 403, 439
HinfI	GANTC	1 cut(s)	450
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	5, 170
HphI	GGTGA	2 cut(s)	445, 580
Hpy166II	GTNNAC	3 cut(s)	31, 403, 439
Hpy188I	TCNGA	2 cut(s)	48, 257
Hpy188III	TCNNGA	5 cut(s)	72, 143, 373, 447, 629
Hpy8I	GTNNAC	3 cut(s)	31, 403, 439
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	19, 512, 547
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	139, 397
HpyCH4V	TGCA	1 cut(s)	599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 596, 620, 688
HpyF3I	CTNAG	4 cut(s)	156, 254, 495, 537
HpySE526I	ACGT	2 cut(s)	139, 397
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	2 cut(s)	232, 651
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	2 cut(s)	48, 606
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	346, 611
LweI	GCATC	2 cut(s)	154, 586
MaeI	CTAG	2 cut(s)	261, 700
MaeII	ACGT	2 cut(s)	139, 397
MaeIII	GTNAC	3 cut(s)	140, 358, 451
MalI	GATC	6 cut(s)	45, 50, 76, 377, 560, 608
MboI	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
MboII	GAAGA	8 cut(s)	215, 316, 511, 520, 523, 562, 583, 649
MflI	RGATCY	2 cut(s)	74, 558
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	9, 89, 119, 228, 352, 467, 526, 538
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	3 cut(s)	210, 330, 402
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	5, 170
MspR9I	CCNGG	2 cut(s)	273, 407
MvaI	CCWGG	2 cut(s)	273, 407
MwoI	GCNNNNNNNGC	4 cut(s)	113, 596, 620, 688
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	1 cut(s)	20
NmuCI	GTSAC	3 cut(s)	140, 358, 451
PaeR7I	CTCGAG	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	336, 601
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	271, 405
PspGI	CCWGG	2 cut(s)	271, 405
PspN4I	GGNNCC	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	18, 365
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	2 cut(s)	74, 558
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	86, 277, 479
RsaNI	GTAC	3 cut(s)	85, 276, 478
SaqAI	TTAA	3 cut(s)	210, 330, 402
SatI	GCNGC	2 cut(s)	335, 600
Sau3AI	GATC	6 cut(s)	43, 48, 74, 375, 558, 606
Sau96I	GGNCC	2 cut(s)	18, 365
ScaI	AGTACT	1 cut(s)	479
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	273, 407
SfaNI	GCATC	2 cut(s)	154, 586
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	18, 365
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 329
SmoI	CTYRAG	2 cut(s)	70, 329
Sse9I	AATT	1 cut(s)	464
SseBI	AGGCCT	1 cut(s)	410
SspMI	CTAG	2 cut(s)	261, 700
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	271, 405
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	142, 400
TaqI	TCGA	3 cut(s)	71, 459, 468
TasI	AATT	1 cut(s)	464
TatI	WGTACW	1 cut(s)	477
Tru1I	TTAA	3 cut(s)	210, 330, 402
Tru9I	TTAA	3 cut(s)	210, 330, 402
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	140, 358, 451
TseI	GCWGC	2 cut(s)	334, 599
Tsp45I	GTSAC	3 cut(s)	140, 358, 451
TspDTI	ATGAA	2 cut(s)	651, 692
TspRI	CASTG	1 cut(s)	285
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	18, 365
XapI	RAATTY	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	261, 700
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.