Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

16036268 .. 16038758

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1201600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGCAAAAGCAAGGAACCCGAGAAAGACCCGAAACCCAGATCTCGTTCGCGGGGTGGGTAAGTTCTCGAGGTCCAAAATGTACCACAAGCGTGGTCTTTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGCCACGACGCGAAGCCGGCGGCGGAGACCCAGCCTGAGAAGCCGCCCAAATTCTACCCCGCCGACGACGTCAAGAAACCTCTCGTCAACAAACGCAAACCCAAGCCCACCAAGCTCAGGGCTAGTATTACACCAGGGACGGTGCTGATTATATTGGCTGGAAGGTTTAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTTCTTCTGGGCTCCTGCTTGTTACTGGTCCGTTTAAAATTAATGGTGTGCCTTTGAGACGTGTTAATCAGTCTTACGTGATTGCCACTTCTACCAAGGTTGACATTTCTGGGTTGAACGTTGAAAAGTTCGATGATAAATACTTTGCTAAGGAAGTTGAAAAGAAGAAGAAGAAGGGAGAGGGCGAATTTTTTGAGGCCGAGAAAGAGGAGAAGAATGTGCTCCCGCAAGGAAAGAAAGACGATCAGAAGAGTGTGGATGCTTCATTGATAAAGTCCATTGAGGCTGTCCCTGACTTGAAGACGTACTTGGCGGCAAGATTCTCTCTCAAGGCTGGGATGAAACCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.07

Weight (kDa)

10.22

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 56	5.3e-16	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	5.2e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	2 cut(s)	54, 149
AciI	CCGC	9 cut(s)	5, 54, 126, 158, 161, 182, 198, 563, 650
AclI	AACGTT	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	188, 524
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	86, 644
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	454, 461, 497, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	158, 388
Ama87I	CYCGRG	2 cut(s)	22, 70
AoxI	GGCC	2 cut(s)	114, 534
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	2 cut(s)	188, 524
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	75, 365
AvaI	CYCGRG	2 cut(s)	22, 70
AvaII	GGWCC	2 cut(s)	75, 365
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	158, 388
BfaI	CTAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	6 cut(s)	6, 127, 159, 182, 335, 651
BlsI	GCNGC	6 cut(s)	7, 128, 160, 183, 336, 652
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	75, 365
BmeT110I	CYCGRG	2 cut(s)	22, 70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	75, 365
BmiI	GGNNCC	2 cut(s)	20, 350
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	586
BpiI	GAAGAC	1 cut(s)	644
Bpu10I	CCTNAGC	2 cut(s)	254, 486
BpuEI	CTTGAG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	272, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	272, 432
BseGI	GGATG	2 cut(s)	601, 681
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	165, 268
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	2 cut(s)	168, 671
Bsh1236I	CGCG	2 cut(s)	54, 149
BshFI	GGCC	2 cut(s)	116, 536
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	2 cut(s)	22, 70
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	158, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	2 cut(s)	116, 536
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	22, 70
Bsp1286I	GDGCHC	2 cut(s)	351, 561
Bsp143I	GATC	2 cut(s)	43, 580
BspACI	CCGC	9 cut(s)	5, 54, 126, 158, 161, 182, 198, 563, 650
BspANI	GGCC	2 cut(s)	116, 536
BspCNI	CTCAG	2 cut(s)	166, 267
BspFNI	CGCG	2 cut(s)	54, 149
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	20, 350
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	272, 432
BssMI	GATC	2 cut(s)	43, 580
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	174, 254, 486
BstF5I	GGATG	2 cut(s)	601, 681
BstFNI	CGCG	2 cut(s)	54, 149
BstKTI	GATC	2 cut(s)	46, 583
BstMAI	GTCTC	2 cut(s)	158, 388
BstMBI	GATC	2 cut(s)	43, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	2 cut(s)	54, 149
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	116, 536
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	601, 681
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	75, 365
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	85, 643
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	2 cut(s)	85, 643
DdeI	CTNAG	3 cut(s)	174, 254, 486
DpnI	GATC	2 cut(s)	45, 582
DpnII	GATC	2 cut(s)	43, 580
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
EciI	GGCGGA	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	75, 365
Eco88I	CYCGRG	2 cut(s)	22, 70
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	689
FaiI	YATR	2 cut(s)	290, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	1 cut(s)	685
FauI	CCCGC	3 cut(s)	47, 205, 570
Fnu4HI	GCNGC	6 cut(s)	6, 127, 159, 182, 335, 651
FokI	GGATG	2 cut(s)	608, 688
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	6 cut(s)	6, 127, 159, 182, 335, 651
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	6 cut(s)	6, 127, 159, 182, 335, 651
GsaI	CCCAGC	2 cut(s)	172, 675
HaeIII	GGCC	2 cut(s)	116, 536
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	689
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HinfI	GANTC	1 cut(s)	657
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	3 cut(s)	70, 211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
Hpy99I	CGWCG	3 cut(s)	149, 206, 209
HpyAV	CCTTC	2 cut(s)	294, 505
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	5 cut(s)	207, 397, 414, 456, 641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
HpyF3I	CTNAG	3 cut(s)	174, 254, 486
HpySE526I	ACGT	5 cut(s)	207, 397, 414, 456, 641
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	689
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	43, 580
LmnI	GCTCC	2 cut(s)	354, 564
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	586
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	5 cut(s)	207, 397, 414, 456, 641
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	45, 582
MboI	GATC	2 cut(s)	43, 580
MboII	GAAGA	7 cut(s)	333, 514, 517, 520, 562, 598, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	351, 561
MluCI	AATT	3 cut(s)	188, 375, 524
MnlI	CCTC	8 cut(s)	66, 147, 228, 511, 526, 538, 613, 693
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	5 cut(s)	306, 330, 372, 378, 402
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	54, 149
MwoI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 178, 250
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	2 cut(s)	43, 580
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	2 cut(s)	20, 350
NmeAIII	GCCGAG	1 cut(s)	562
OliI	CACNNNNGTG	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	657
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	7, 128, 160, 183, 336, 652
Ppu21I	YACGTR	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	378
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	168, 671
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	20, 350
PspPI	GGNCC	2 cut(s)	75, 365
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	86, 644
RsaNI	GTAC	2 cut(s)	85, 643
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	306, 330, 372, 378, 402
SatI	GCNGC	6 cut(s)	6, 127, 159, 182, 335, 651
Sau3AI	GATC	2 cut(s)	43, 580
Sau96I	GGNCC	2 cut(s)	75, 365
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	351, 561
SfaNI	GCATC	1 cut(s)	586
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	2 cut(s)	75, 365
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	70, 329, 665
SmoI	CTYRAG	3 cut(s)	70, 329, 665
Sse9I	AATT	3 cut(s)	188, 375, 524
SsiI	CCGC	9 cut(s)	5, 54, 126, 158, 161, 182, 198, 563, 650
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	5 cut(s)	210, 400, 417, 459, 644
TaqI	TCGA	2 cut(s)	71, 468
TasI	AATT	3 cut(s)	188, 375, 524
TauI	GCSGC	5 cut(s)	8, 129, 161, 184, 653
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	5 cut(s)	306, 330, 372, 378, 402
Tru9I	TTAA	5 cut(s)	306, 330, 372, 378, 402
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	591, 692
TspGWI	ACGGA	1 cut(s)	357
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	75, 365
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	188, 524
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.