Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

7274300 .. 7276354

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1062000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGCAAAAGCAAGAAACCCTAGAAAGACCCGAAACCCAGATCTGGTTCGTGGGGTGGGTAAGTTCTCGAGGTCCAAAATGTACCACAAGCGTGGTCTCTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTCCCATGCCATGACCCGAAGCCGGCGGCCGAGACCGCACCCGAGAAGCCCCCGAAGTTCTACCCCGCTGACGACGTCAAGAAGCCACTCGTCAACAAACGCAAGCCCAAACCCACCAAGCTCAGGGCTAGTATTACAGCAGGGACGGTGTTGATTATATTGGCTGGGAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGCAGCTTCCATCTGGGTTGCTTCTTGTTACTGGGCCCTTTAAAATTAATGGTGTTCCCTTGAGACGTGTTAATCAATCTTATGTGATTGGCACTTCCACCAAGGTTGACATTTCTGGGGTGAATGTAGAAAAGTTTGATGACAAATATTTTGCAAAGGAAGTTGAAAAGAAGAAGAAGAAGGGCGAGGGAGAGTTTTTTGAGGCCGAGAAAGAGGAAAAGAGTGTGCTCCCACAAGGAAGGAAAGATGAACAGAAGAGTGTGGATGCATCATTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCGGCGAGGTTCTCGCTGAAGGCAGGCATGAAGCCTCATGAGCTTGTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

25.97

Weight (kDa)

10.14

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 52	1.8e-14	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	6.5e-40	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AciI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 650
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	497, 637
AjiI	CACGTC	1 cut(s)	398
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	104, 158, 388
Ama87I	CYCGRG	2 cut(s)	70, 173
AoxI	GGCC	4 cut(s)	114, 159, 365, 534
ApaI	GGGCCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	334
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	75, 365, 366
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	2 cut(s)	70, 173
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	104, 158, 388
BfaI	CTAG	2 cut(s)	24, 261
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
BlsI	GCNGC	5 cut(s)	7, 128, 160, 336, 652
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	70, 173
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	75, 365, 366
BmiI	GGNNCC	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	586, 608
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	2 cut(s)	104, 158
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 154, 255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	369
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	116, 161, 367, 536
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	2 cut(s)	70, 173
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BsmAI	GTCTC	3 cut(s)	104, 158, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	4 cut(s)	116, 161, 367, 536
Bso31I	GGTCTC	2 cut(s)	104, 158
BsoBI	CYCGRG	2 cut(s)	70, 173
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	369, 561
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 650
BspANI	GGCC	4 cut(s)	116, 161, 367, 536
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	2 cut(s)	104, 158
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	156, 236, 673
BstDEI	CTNAG	2 cut(s)	254, 646
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	3 cut(s)	104, 158, 388
BstMBI	GATC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
BstSLI	GKGCMC	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	116, 161, 367, 536
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	156, 236, 673
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	75, 365, 366
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	4 cut(s)	138, 143, 676, 686
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	254, 646
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	2 cut(s)	104, 158
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	2 cut(s)	70, 173
EcoO109I	RGGNCCY	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	4 cut(s)	141, 146, 679, 689
FaiI	YATR	7 cut(s)	139, 144, 290, 414, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	4 cut(s)	137, 142, 675, 685
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
FspBI	CTAG	2 cut(s)	24, 261
GluI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	4 cut(s)	116, 161, 367, 536
HapII	CCGG	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	141, 146, 679, 689
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188III	TCNNGA	3 cut(s)	70, 211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	505, 564, 661
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	207, 397
HpyCH4V	TGCA	2 cut(s)	485, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
HpyF3I	CTNAG	2 cut(s)	254, 646
HpySE526I	ACGT	2 cut(s)	207, 397
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	141, 146, 679, 689
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	586, 608
MaeI	CTAG	2 cut(s)	24, 261
MaeII	ACGT	2 cut(s)	207, 397
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	5 cut(s)	514, 517, 520, 598, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	369, 561
MluCI	AATT	1 cut(s)	375
MnlI	CCTC	8 cut(s)	66, 294, 511, 526, 538, 613, 648, 693
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	5 cut(s)	306, 330, 372, 378, 402
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	141, 146, 679, 689
NlaIV	GGNNCC	1 cut(s)	367
NmeAIII	GCCGAG	2 cut(s)	187, 562
NsiI	ATGCAT	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	7, 128, 160, 336, 652
PshBI	ATTAAT	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	367
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	75, 365, 366
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	5 cut(s)	306, 330, 372, 378, 402
SatI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	3 cut(s)	75, 365, 366
SduI	GDGCHC	2 cut(s)	369, 561
SetI	ASST	9 cut(s)	77, 210, 255, 305, 339, 400, 438, 659, 693
SfaNI	GCATC	2 cut(s)	586, 608
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	70, 329, 391
SmoI	CTYRAG	3 cut(s)	70, 329, 391
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 650
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	2 cut(s)	24, 261
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	210, 400
TaqI	TCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	375
TauI	GCSGC	4 cut(s)	8, 129, 161, 653
Tru1I	TTAA	5 cut(s)	306, 330, 372, 378, 402
Tru9I	TTAA	5 cut(s)	306, 330, 372, 378, 402
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	594, 692
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	2 cut(s)	24, 261
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.