RLG00000023488

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002002
Physical Location & Seq
Reverse (-)
24482155 .. 24483824
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023488

Sequence Viewer

Length: 621 bp
ATGTACCACAAGCGCGGTCTCTGGGCCATCAAGGCCAAAAATGGCGGTGCCTTCCCACGTCACGACGCCAAGCCGGCGGCTGAGGCTCCGTCGGTGAAGCCTCCCAAGTTCTACCCTGCTGAGGACGTCAAGAAGCCCCTGGTTAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCGAGTATTACACCCGGGACTGTGTTGATTATACTGGCTGGAAGGTTTAAGGGGAAGAGAGTTGTTTTCCTTAAGCAGCTTTCATCTGGGTTGCTTCTTGTTACTGGGCCATTCAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTACGTGATTGGCACTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAGAAGAAGAAAAAGAAGGGGGGGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTTGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

207

Amino Acids

22.92

Weight (kDa)

10.09

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e PF01159 99 - 206 2.7e-40 Ribosomal protein L6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 15
AciI CCGC 3 cut(s) 15, 45, 77
AcsI RAATTY 1 cut(s) 383
AcyI GRCGYC 2 cut(s) 66, 126
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 121, 174
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 2 cut(s) 292, 556
AjiI CACGTC 2 cut(s) 59, 317
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 172, 256, 569, 610
AluI AGCT 4 cut(s) 172, 256, 569, 610
Alw26I GTCTC 2 cut(s) 23, 307
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 4 cut(s) 24, 33, 284, 408
ApeKI GCWGC 2 cut(s) 253, 569
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 24, 284
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 191
BanI GGYRCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 563
BbvCI CCTCAGC 2 cut(s) 81, 120
BbvI GCAGC 2 cut(s) 265, 556
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 2 cut(s) 23, 307
BfrI CTTAAG 1 cut(s) 248
BglI GCCNNNNNGGC 2 cut(s) 32, 74
BisI GCNGC 3 cut(s) 78, 254, 570
BlsI GCNGC 3 cut(s) 79, 255, 571
Bme1390I CCNGG 3 cut(s) 140, 192, 193
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 2 cut(s) 59, 317
BmgT120I GGNCC 2 cut(s) 24, 284
BmiI GGNNCC 2 cut(s) 49, 87
BmrFI CCNGG 3 cut(s) 140, 192, 193
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 505
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 563
Bpu10I CCTNAGC 3 cut(s) 81, 120, 173
BpuMI CCSGG 2 cut(s) 192, 193
BsaAI YACGTR 1 cut(s) 334
BsaHI GRCGYC 2 cut(s) 66, 126
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 138, 191, 351, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 174
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 216, 286
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 138, 191, 351, 411
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 121, 174
BseMII CTCAG 3 cut(s) 72, 111, 187
BseNI ACTGG 2 cut(s) 216, 286
BseXI GCAGC 2 cut(s) 265, 556
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 26, 35, 286, 410
BshNI GGYRCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 74, 192
BslFI GGGAC 2 cut(s) 208, 530
BslI CCNNNNNNNGG 2 cut(s) 121, 174
BsmAI GTCTC 2 cut(s) 23, 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 208, 530
BsnI GGCC 4 cut(s) 26, 35, 286, 410
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 3 cut(s) 15, 45, 77
BspANI GGCC 4 cut(s) 26, 35, 286, 410
BspCNI CTCAG 3 cut(s) 73, 112, 186
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 49, 87
BspT107I GGYRCC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 216, 286
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 4 cut(s) 138, 191, 351, 411
BssMI GATC 1 cut(s) 499
BssNI GRCGYC 2 cut(s) 66, 126
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 227, 500
BstACI GRCGYC 2 cut(s) 66, 126
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 5 cut(s) 81, 120, 173, 565, 584
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 2 cut(s) 23, 307
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 5 cut(s) 32, 74, 83, 169, 607
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 3 cut(s) 138, 190, 191
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 265, 556
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 4 cut(s) 26, 35, 286, 410
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 2 cut(s) 59, 317
BtsCI GGATG 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 24, 284
Cfr9I CCCGGG 1 cut(s) 191
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 595, 605
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 5 cut(s) 81, 120, 173, 565, 584
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 227, 500
EarI CTCTTC 2 cut(s) 227, 500
Eco130I CCWWGG 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 2 cut(s) 598, 608
FaiI YATR 4 cut(s) 209, 562, 596, 606
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 208, 530
FatI CATG 2 cut(s) 594, 604
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 78, 254, 570
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 3 cut(s) 78, 254, 570
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 78, 254, 570
HaeIII GGCC 4 cut(s) 26, 35, 286, 410
HapII CCGG 2 cut(s) 74, 192
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 15
Hin1I GRCGYC 2 cut(s) 66, 126
Hin1II CATG 2 cut(s) 598, 608
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 322, 576
HpaI GTTAAC 1 cut(s) 145
HpaII CCGG 2 cut(s) 74, 192
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 404, 504
Hpy188III TCNNGA 4 cut(s) 62, 130, 292, 605
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 68, 94
HpyAV CCTTC 3 cut(s) 61, 213, 424
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 4 cut(s) 58, 126, 316, 333
HpyCH4V TGCA 1 cut(s) 572
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 74, 83, 169, 607
HpyF3I CTNAG 5 cut(s) 81, 120, 173, 565, 584
HpySE526I ACGT 4 cut(s) 58, 126, 316, 333
Hsp92I GRCGYC 2 cut(s) 66, 126
Hsp92II CATG 2 cut(s) 598, 608
HspAI GCGC 1 cut(s) 13
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 2 cut(s) 265, 556
LweI GCATC 1 cut(s) 505
MaeII ACGT 4 cut(s) 58, 126, 316, 333
MaeIII GTNAC 2 cut(s) 59, 277
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 5 cut(s) 244, 430, 433, 517, 568
MluCI AATT 1 cut(s) 383
MnlI CCTC 8 cut(s) 76, 111, 115, 445, 457, 483, 532, 612
MroNI GCCGGC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 5 cut(s) 144, 225, 249, 297, 372
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 2 cut(s) 74, 192
MspR9I CCNGG 3 cut(s) 140, 192, 193
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 5 cut(s) 32, 74, 83, 169, 607
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 2 cut(s) 192, 193
NdeII GATC 1 cut(s) 499
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 598, 608
NlaIV GGNNCC 2 cut(s) 49, 87
NmuCI GTSAC 1 cut(s) 59
PagI TCATGA 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdiI GCCGGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 322, 576
PkrI GCNGC 3 cut(s) 79, 255, 571
Ppu21I YACGTR 1 cut(s) 334
PshBI ATTAAT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 49, 87
PspPI GGNCC 2 cut(s) 24, 284
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 144, 225, 249, 297, 372
SatI GCNGC 3 cut(s) 78, 254, 570
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 2 cut(s) 24, 284
ScrFI CCNGG 3 cut(s) 140, 192, 193
SfaNI GCATC 1 cut(s) 505
SfiI GGCCNNNNNGGCC 1 cut(s) 32
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 383
SsiI CCGC 3 cut(s) 15, 45, 77
StyD4I CCNGG 3 cut(s) 138, 190, 191
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 4 cut(s) 61, 129, 319, 336
TaqI TCGA 1 cut(s) 357
TasI AATT 1 cut(s) 383
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 322, 576
Tru1I TTAA 5 cut(s) 144, 225, 249, 297, 372
Tru9I TTAA 5 cut(s) 144, 225, 249, 297, 372
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 253, 569
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 249, 611
TspGWI ACGGA 1 cut(s) 78
TspMI CCCGGG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 248
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 383
XmaI CCCGGG 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 476
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.