Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

25969489 .. 25974672

Gene Structure 5184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCACCAAAAGCGAGAGTTCCCCGAAAGACCCGAAACCCAGATCTGGTCCGTGGAGTGGGTAAGTACTCCAGGTCCAAGATGTACCACAAGCGCGGTCTCTGGGCCATCAAGGCCAAAAATGGCGGTGCCTTCCCACGTCACGACGCCAAGCCGGCGGCTGAGGCTCCGTCGGTGAAGCCTCCCAAGTTCTACCCTGCTGAGGACGTCAAGAAGCCCCTGGTCAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCGAGTATTACACCCGGGACTGTGTTGATTATACTGGCTGGAAGGTTTAAGGGGAAGAGAGTTGTTTTCCTTAAGCAGCTTTCATCTGGGTTGCTTCTTGTTACTGGGCCATTCAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTACGTGATTGGCACTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTAGAGCATGCTATCAGCACGAGATGGCAGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

233

Amino Acids

26.09

Weight (kDa)

10.18

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	1.8e-16	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 230	9.7e-37	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	2 cut(s)	4, 128
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	96, 126, 158
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	147, 207
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	373, 637
AjiI	CACGTC	2 cut(s)	140, 398
AjnI	CCWGG	2 cut(s)	71, 219
AluBI	AGCT	3 cut(s)	253, 337, 650
AluI	AGCT	3 cut(s)	253, 337, 650
Alw26I	GTCTC	2 cut(s)	104, 388
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	105, 114, 365, 489
ApeKI	GCWGC	2 cut(s)	334, 650
ApoI	RAATTY	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	4 cut(s)	49, 75, 105, 365
AsuC2I	CCSGG	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	49, 75
BanI	GGYRCC	2 cut(s)	4, 128
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	2 cut(s)	644, 688
BbvCI	CCTCAGC	2 cut(s)	162, 201
BbvI	GCAGC	2 cut(s)	346, 637
BccI	CCATC	2 cut(s)	116, 682
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	73, 221
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	273, 274
BcoDI	GTCTC	2 cut(s)	104, 388
BfrI	CTTAAG	1 cut(s)	329
BglI	GCCNNNNNGGC	2 cut(s)	113, 155
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	3 cut(s)	159, 335, 651
BlsI	GCNGC	3 cut(s)	160, 336, 652
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	4 cut(s)	73, 221, 273, 274
Bme18I	GGWCC	2 cut(s)	49, 75
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	2 cut(s)	140, 398
BmgT120I	GGNCC	4 cut(s)	49, 75, 105, 365
BmiI	GGNNCC	3 cut(s)	6, 130, 168
BmrFI	CCNGG	4 cut(s)	73, 221, 273, 274
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	644, 688
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	3 cut(s)	162, 201, 254
BpuMI	CCSGG	2 cut(s)	273, 274
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	2 cut(s)	147, 207
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	297, 367
BseBI	CCWGG	2 cut(s)	73, 221
BseDI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
BseMII	CTCAG	3 cut(s)	153, 192, 268
BseNI	ACTGG	2 cut(s)	297, 367
BseXI	GCAGC	2 cut(s)	346, 637
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	107, 116, 367, 491
BshNI	GGYRCC	2 cut(s)	4, 128
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	155, 273
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
BsmAI	GTCTC	2 cut(s)	104, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	4 cut(s)	107, 116, 367, 491
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	43, 580
BspACI	CCGC	3 cut(s)	96, 126, 158
BspANI	GGCC	4 cut(s)	107, 116, 367, 491
BspCNI	CTCAG	3 cut(s)	154, 193, 267
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	6, 130, 168
BspT107I	GGYRCC	2 cut(s)	4, 128
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	297, 367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BssMI	GATC	2 cut(s)	43, 580
BssNI	GRCGYC	2 cut(s)	147, 207
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	2 cut(s)	73, 221
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	308, 581
BstACI	GRCGYC	2 cut(s)	147, 207
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	156, 673
BstDEI	CTNAG	5 cut(s)	162, 201, 254, 646, 665
BstDSI	CCRYGG	2 cut(s)	52, 492
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	46, 583
BstMAI	GTCTC	2 cut(s)	104, 388
BstMBI	GATC	2 cut(s)	43, 580
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 164, 250
BstNI	CCWGG	2 cut(s)	73, 221
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	4 cut(s)	71, 219, 271, 272
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	2 cut(s)	644, 688
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	107, 116, 367, 491
BtgI	CCRYGG	2 cut(s)	52, 492
BtrI	CACGTC	2 cut(s)	140, 398
BtsCI	GGATG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	156, 673
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	4 cut(s)	49, 75, 105, 365
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	67, 85
CviAII	CATG	1 cut(s)	672
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	5 cut(s)	162, 201, 254, 646, 665
DpnI	GATC	2 cut(s)	45, 582
DpnII	GATC	2 cut(s)	43, 580
Eam1104I	CTCTTC	2 cut(s)	308, 581
EarI	CTCTTC	2 cut(s)	308, 581
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	49, 75
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	71, 219
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	675
FaiI	YATR	3 cut(s)	290, 643, 673
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	1 cut(s)	671
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	3 cut(s)	159, 335, 651
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	159, 335, 651
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	159, 335, 651
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	107, 116, 367, 491
HapII	CCGG	2 cut(s)	155, 273
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	2 cut(s)	147, 207
Hin1II	CATG	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	403, 657
HpaII	CCGG	2 cut(s)	155, 273
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	485, 585, 701
Hpy188III	TCNNGA	3 cut(s)	143, 211, 373
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	149, 175
HpyAV	CCTTC	3 cut(s)	142, 294, 505
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	4 cut(s)	139, 207, 397, 414
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 164, 250
HpyF3I	CTNAG	5 cut(s)	162, 201, 254, 646, 665
HpySE526I	ACGT	4 cut(s)	139, 207, 397, 414
Hsp92I	GRCGYC	2 cut(s)	147, 207
Hsp92II	CATG	1 cut(s)	675
HspAI	GCGC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	43, 580
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	346, 637
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	4 cut(s)	139, 207, 397, 414
MaeIII	GTNAC	2 cut(s)	140, 358
MalI	GATC	2 cut(s)	45, 582
MboI	GATC	2 cut(s)	43, 580
MboII	GAAGA	7 cut(s)	325, 514, 517, 520, 598, 649, 688
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	464
MnlI	CCTC	8 cut(s)	157, 192, 196, 511, 526, 538, 564, 613
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	4 cut(s)	306, 330, 378, 453
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	155, 273
MspR9I	CCNGG	4 cut(s)	73, 221, 273, 274
MvaI	CCWGG	2 cut(s)	73, 221
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	11, 113, 155, 164, 250
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	2 cut(s)	273, 274
NdeII	GATC	2 cut(s)	43, 580
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	3 cut(s)	6, 130, 168
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	675
PaeI	GCATGC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	403, 657
PkrI	GCNGC	3 cut(s)	160, 336, 652
Ppu21I	YACGTR	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	71, 219
PspGI	CCWGG	2 cut(s)	71, 219
PspN4I	GGNNCC	3 cut(s)	6, 130, 168
PspPI	GGNCC	4 cut(s)	49, 75, 105, 365
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SaqAI	TTAA	4 cut(s)	306, 330, 378, 453
SatI	GCNGC	3 cut(s)	159, 335, 651
Sau3AI	GATC	2 cut(s)	43, 580
Sau96I	GGNCC	4 cut(s)	49, 75, 105, 365
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	73, 221, 273, 274
SfaNI	GCATC	1 cut(s)	586
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SinI	GGWCC	2 cut(s)	49, 75
SmaI	CCCGGG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	3 cut(s)	96, 126, 158
StyD4I	CCNGG	4 cut(s)	71, 219, 271, 272
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	4 cut(s)	142, 210, 400, 417
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	464
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	403, 657
Tru1I	TTAA	4 cut(s)	306, 330, 378, 453
Tru9I	TTAA	4 cut(s)	306, 330, 378, 453
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	334, 650
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	2 cut(s)	41, 159
TspMI	CCCGGG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	49, 75
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	675
XmaI	CCCGGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	557
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.