Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

6642676 .. 6645377

Gene Structure 2702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1062400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGCTAAAGCAAGAAACCCGAGAAAGACCCGAAACCCAGATCTGGTTCGTGGGGTGGGTAAGTTTTCGAGGTCCAAGATGTACCACAAGCGTGGTCTCTGGGCTATCAAGGCCAAAAATGGCGGCGTTTTTCCAAGCCATGACCCGAAGCCGGCGGCCGAGACCGCATCCGAGAAGCCCCCGAAGTTCTACCCCGCCGATGACGTCAAGAAGCCACTCGTCAACAAACGCAAGCCAAAACCCACCAAGCTCAGGGCGAGTATTACACGGGGGACGTTGTTGATTATATTGGCTGGGAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGCAGCTTCCATCTGGGTTGCTTCTTGTTACCGGGCCCTTTAAAATTAATGGTGTTCCTTTGAGACGCGTTAATCAGTCTTATGTGATTGCCACTTCAACCAAGGTTGACATTTCTGGGGTGAATGTAGAAAAGTTTGATGACAAATATTTTGCAAAGGAAGTTGAAAAGAAGAAGAAGAAGGGTGAGGGAGAGTTTTTTGAGGCAGATAAAGAGGAAAAGAGTGTGCTCCCACAAGGAAAGAAAGATGATCAGAAGAGTGTGGATGCTTCATTGATAAAGTCCATCGAGGCTGTCCCAGACTTGAAGACGTACTTAGCAGCGAGATTCTCTCTTAAGGCGGGCATGAAGCCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

25.99

Weight (kDa)

10.22

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 56	8.1e-15	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	4.2e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccII	CGCG	1 cut(s)	399
AciI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 671
AcoI	YGGCCR	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	86, 644
AfiI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
AflII	CTTAAG	2 cut(s)	329, 665
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	429, 497, 637
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	104, 158, 388
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	114, 159, 365
ApaI	GGGCCC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	334, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	75, 365, 366
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	2 cut(s)	463, 527
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	346, 662
BccI	CCATC	2 cut(s)	349, 623
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	104, 158, 388
BfrI	CTTAAG	2 cut(s)	329, 665
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
BlsI	GCNGC	5 cut(s)	7, 128, 160, 336, 652
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	75, 365, 366
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	179, 586
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	2 cut(s)	104, 158
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 154, 255
Bse118I	RCCGGY	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	170, 601
BseLI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BseMII	CTCAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	369
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	346, 662
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	116, 161, 367
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	155, 363
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BsmAI	GTCTC	3 cut(s)	104, 158, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	3 cut(s)	116, 161, 367
Bso31I	GGTCTC	2 cut(s)	104, 158
BsoBI	CYCGRG	1 cut(s)	22
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	369, 561
Bsp143I	GATC	2 cut(s)	43, 580
BspACI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 671
BspANI	GGCC	3 cut(s)	116, 161, 367
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	367
BspTI	CTTAAG	2 cut(s)	329, 665
BspTNI	GGTCTC	2 cut(s)	104, 158
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	43, 580
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	432
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	2 cut(s)	329, 665
BstC8I	GCNNGC	3 cut(s)	156, 236, 673
BstDEI	CTNAG	2 cut(s)	254, 646
BstF5I	GGATG	2 cut(s)	170, 601
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	46, 583
BstMAI	GTCTC	3 cut(s)	104, 158, 388
BstMBI	GATC	2 cut(s)	43, 580
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	346, 662
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	116, 161, 367
BtsCI	GGATG	2 cut(s)	170, 601
Cac8I	GCNNGC	3 cut(s)	156, 236, 673
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	75, 365, 366
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	85, 643
CviAII	CATG	3 cut(s)	143, 676, 686
CviQI	GTAC	2 cut(s)	85, 643
DdeI	CTNAG	2 cut(s)	254, 646
DpnI	GATC	2 cut(s)	45, 582
DpnII	GATC	2 cut(s)	43, 580
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	159
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	2 cut(s)	104, 158
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	146, 679, 689
FaiI	YATR	5 cut(s)	144, 290, 414, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	3 cut(s)	142, 675, 685
FauI	CCCGC	2 cut(s)	205, 664
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
FokI	GGATG	2 cut(s)	157, 608
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
GluI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	116, 161, 367
HapII	CCGG	2 cut(s)	155, 363
HgaI	GACGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	146, 679, 689
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HinfI	GANTC	1 cut(s)	657
HpaII	CCGG	2 cut(s)	155, 363
HphI	GGTGA	2 cut(s)	463, 527
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	2 cut(s)	175, 585
Hpy188III	TCNNGA	2 cut(s)	211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
HpyAV	CCTTC	1 cut(s)	505
HpyCH4IV	ACGT	3 cut(s)	207, 278, 641
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
HpyF3I	CTNAG	2 cut(s)	254, 646
HpySE526I	ACGT	3 cut(s)	207, 278, 641
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	146, 679, 689
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	43, 580
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	2 cut(s)	346, 662
LweI	GCATC	2 cut(s)	179, 586
MaeII	ACGT	3 cut(s)	207, 278, 641
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	45, 582
MboI	GATC	2 cut(s)	43, 580
MboII	GAAGA	5 cut(s)	514, 517, 520, 598, 649
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	369, 561
MluCI	AATT	1 cut(s)	375
MluI	ACGCGT	1 cut(s)	397
MnlI	CCTC	7 cut(s)	66, 294, 511, 526, 538, 613, 693
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	6 cut(s)	306, 330, 372, 378, 402, 666
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	2 cut(s)	329, 665
MspI	CCGG	2 cut(s)	155, 363
MspR9I	CCNGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	4 cut(s)	11, 113, 167, 688
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	2 cut(s)	43, 580
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	146, 679, 689
NlaIV	GGNNCC	1 cut(s)	367
NmeAIII	GCCGAG	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	657
PkrI	GCNGC	5 cut(s)	7, 128, 160, 336, 652
PshBI	ATTAAT	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	367
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	75, 365, 366
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	86, 644
RsaNI	GTAC	2 cut(s)	85, 643
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	6 cut(s)	306, 330, 372, 378, 402, 666
SatI	GCNGC	5 cut(s)	6, 127, 159, 335, 651
Sau3AI	GATC	2 cut(s)	43, 580
Sau96I	GGNCC	3 cut(s)	75, 365, 366
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	369, 561
SetI	ASST	9 cut(s)	77, 210, 255, 281, 305, 339, 438, 644, 693
SfaNI	GCATC	2 cut(s)	179, 586
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	329, 665
SmoI	CTYRAG	2 cut(s)	329, 665
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	6 cut(s)	5, 126, 158, 168, 198, 671
SspI	AATATT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	3 cut(s)	210, 281, 644
TaqI	TCGA	2 cut(s)	71, 618
TasI	AATT	1 cut(s)	375
TauI	GCSGC	3 cut(s)	8, 129, 161
TfiI	GAWTC	1 cut(s)	657
Tru1I	TTAA	6 cut(s)	306, 330, 372, 378, 402, 666
Tru9I	TTAA	6 cut(s)	306, 330, 372, 378, 402, 666
TseI	GCWGC	2 cut(s)	334, 650
TspDTI	ATGAA	2 cut(s)	591, 692
Vha464I	CTTAAG	2 cut(s)	329, 665
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.