Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

19478168 .. 19479749

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0218000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAGCCACCAAGTCGATCTACTTCAAGAATGGGGAAGAACTTTGACAGACTTAGCAACTTACCCTTCGATGTTCTAGAACAAATTTTGTCATGTTTGCCCATTAAGGATGCAGTGAAAACGAGTGTTTTATCAAGCAACTGGAGGTACAAAGCAGCTACGCTTCCAAATCTTGTGTTTGATGATCATTGTATCTCGGGTGAATTCTTATCTGTTAATTCATCGAGCATTGATAGTTACAATAATTACAATTCTCTTATGCTTCCGTATCATCGTTTGTGTGATAAACAGTACTACTCTGCCTGGTGCCCAAACCATGCAGCCATTGTCAATATTGTTGATCATGTACTTTCTTCTCATATTGGTCCCATACACAAGTTCAGGATTTCCCATCCCCATCTTCAAGCCAGCCATGATATTGATAGATGGATTCTTCATCTATCAACAAAGTCTATCAGGGAGTTCAGTCTTGAAATCTTGACATGGCGCCCCTACAGTATCCCTCCATGTCTGTTTTCGTGTCAAGATATTGTTCATCTAGAGTTGTATCATTGTTTGTTAAAACTACCAAGGAAATTCAAAGGTTTTGAGAATTTGAAGAGCATGGACATTCAGCGTGTTCGCCTCTCCCGCCGTGTTCTTGAAAAGCTAATTATTCGGTGTCCACTACTTGAGAGATTGACACTGGCAAACTGTGATGGTTTCAGCCATTTCAAGATTAATGCACCGAATCTCCGGATACTTGACCTTGAAGGTAAATTTGAGGATTTCATTCTCGAAAATACCTCAAATCTGGCTGAGGTTTGCATTGATTTGGACTTCAAGGCTAACCAAAAACAGATTCTCGACTGTAATTCTAGCAATTTGCTCAAATTTTTTGCTGACTTGCCTAATATTAGAAAGCTCAGAGTTCAGAATCAGTTTATAAAGTATCTGGCTGTTGGTCCTCTACCAGAAAAGTTGCCTGAACCATGTCGGTATCTTGAATTTCTTTCTGTATGCGTAAGCTTCAGTGATTTGGATGAGATTCTAACTCTTCTAGGCCTTTTGAGAAGCTCCCCTGCACTAAAAGAACTAGAAATTTTGGTCTGCAAAGAAGATAACGCTGGTGGGGGAGAAATGTATTCTGGGCTACATGACAATGTGAGTTGTCAATTCACCCAACTGCAACTTGTTAAAATAACAGGCATCTCTGTCAAAGCTGAATTAGATTTCATCAAATTTCTGCTTTTAAGTTCACCTGTGCTTAAGACGATGACTGTTACGCCTACTTCTGTGAATGATTTTCTGGAACTAGTTGGAGAGTTGCTCGGGTTTAGGTGTGCCTCAGCGAGTGCCAATATAATCTACTTAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

453

Amino Acids

51.58

Weight (kDa)

6.7

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 54	2.3e-08	F-box domain
LRR_At1g61320_AtMIF1	PF23622	127 - 422	9.4e-13	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	140 - 361	3e-20	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AccB1I	GGYRCC	2 cut(s)	306, 486
AccIII	TCCGGA	1 cut(s)	735
AciI	CCGC	1 cut(s)	631
AcsI	RAATTY	9 cut(s)	84, 203, 575, 592, 758, 872, 986, 1080, 1220
AcuI	CTGAAG	1 cut(s)	994
AcyI	GRCGYC	1 cut(s)	487
AfaI	GTAC	3 cut(s)	149, 293, 348
AflII	CTTAAG	1 cut(s)	1247
AhlI	ACTAGT	1 cut(s)	1294
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AluBI	AGCT	6 cut(s)	158, 649, 904, 1008, 1056, 1202
AluI	AGCT	6 cut(s)	158, 649, 904, 1008, 1056, 1202
Ama87I	CYCGRG	2 cut(s)	196, 1310
Aor13HI	TCCGGA	1 cut(s)	735
AoxI	GGCC	1 cut(s)	1042
ApeKI	GCWGC	2 cut(s)	155, 320
ApoI	RAATTY	9 cut(s)	84, 203, 575, 592, 758, 872, 986, 1080, 1220
AseI	ATTAAT	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	365, 944
AsuHPI	GGTGA	3 cut(s)	212, 1150, 1230
AvaI	CYCGRG	2 cut(s)	196, 1310
AvaII	GGWCC	2 cut(s)	365, 944
BaeGI	GKGCMC	1 cut(s)	311
BanI	GGYRCC	2 cut(s)	306, 486
BbvCI	CCTCAGC	2 cut(s)	798, 1327
BbvI	GCAGC	2 cut(s)	167, 332
BccI	CCATC	4 cut(s)	399, 405, 420, 692
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	304
BciVI	GTATCC	2 cut(s)	509, 732
BclI	TGATCA	2 cut(s)	184, 340
BcuI	ACTAGT	1 cut(s)	1294
BfaI	CTAG	6 cut(s)	77, 539, 858, 1040, 1076, 1295
BfmI	CTRYAG	1 cut(s)	493
BfoI	RGCGCY	1 cut(s)	490
BfrI	CTTAAG	1 cut(s)	1247
BfuI	GTATCC	2 cut(s)	509, 732
BisI	GCNGC	2 cut(s)	156, 321
BlsI	GCNGC	2 cut(s)	157, 322
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	2 cut(s)	365, 944
BmeT110I	CYCGRG	2 cut(s)	196, 1310
BmgT120I	GGNCC	2 cut(s)	365, 944
BmiI	GGNNCC	4 cut(s)	6, 308, 367, 488
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	100, 1197
BplI	GAGNNNNNCTC	2 cut(s)	1293, 1325
BpmI	CTGGAG	1 cut(s)	163
Bpu10I	CCTNAGC	2 cut(s)	798, 1327
BpuEI	CTTGAG	1 cut(s)	692
BsaHI	GRCGYC	1 cut(s)	487
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bse1I	ACTGG	2 cut(s)	146, 690
BseAI	TCCGGA	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	3 cut(s)	115, 391, 1027
BseMII	CTCAG	3 cut(s)	789, 919, 1341
BseNI	ACTGG	2 cut(s)	146, 690
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	167, 332
BsgI	GTGCAG	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	1044
BshNI	GGYRCC	2 cut(s)	306, 486
BsiHKCI	CYCGRG	2 cut(s)	196, 1310
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	1044
BsoBI	CYCGRG	2 cut(s)	196, 1310
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp13I	TCCGGA	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	17, 184, 340
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	1 cut(s)	1044
BspCNI	CTCAG	3 cut(s)	790, 918, 1340
BspEI	TCCGGA	1 cut(s)	735
BspLI	GGNNCC	4 cut(s)	6, 308, 367, 488
BspQI	GCTCTTC	1 cut(s)	593
BspT107I	GGYRCC	2 cut(s)	306, 486
BspTI	CTTAAG	1 cut(s)	1247
BsrI	ACTGG	2 cut(s)	146, 690
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	17, 184, 340
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	5 cut(s)	291, 497, 695, 851, 1261
Bst6I	CTCTTC	2 cut(s)	593, 1041
BstACI	GRCGYC	1 cut(s)	487
BstAFI	CTTAAG	1 cut(s)	1247
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	53, 798, 905, 1327, 1351
BstF5I	GGATG	3 cut(s)	115, 391, 1027
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	3 cut(s)	20, 187, 343
BstMBI	GATC	3 cut(s)	17, 184, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	630
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	493
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	167, 332
BsuI	GTATCC	2 cut(s)	509, 732
BsuRI	GGCC	1 cut(s)	1044
BtsCI	GGATG	3 cut(s)	115, 391, 1027
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 683, 1018
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	365, 944
Csp6I	GTAC	3 cut(s)	148, 292, 347
CviQI	GTAC	3 cut(s)	148, 292, 347
DdeI	CTNAG	5 cut(s)	53, 798, 905, 1327, 1351
DinI	GGCGCC	1 cut(s)	488
DpnI	GATC	3 cut(s)	19, 186, 342
DpnII	GATC	3 cut(s)	17, 184, 340
Eam1104I	CTCTTC	2 cut(s)	593, 1041
EarI	CTCTTC	2 cut(s)	593, 1041
Eco130I	CCWWGG	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	1044
Eco47I	GGWCC	2 cut(s)	365, 944
Eco57I	CTGAAG	1 cut(s)	994
Eco88I	CYCGRG	2 cut(s)	196, 1310
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	569
EgeI	GGCGCC	1 cut(s)	488
EheI	GGCGCC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	569
FaqI	GGGAC	1 cut(s)	351
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	2 cut(s)	184, 340
Fnu4HI	GCNGC	2 cut(s)	156, 321
FokI	GGATG	3 cut(s)	122, 378, 1034
Fsp4HI	GCNGC	2 cut(s)	156, 321
FspBI	CTAG	6 cut(s)	77, 539, 858, 1040, 1076, 1295
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	2 cut(s)	156, 321
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	1044
HapII	CCGG	1 cut(s)	736
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HindIII	AAGCTT	1 cut(s)	1006
HinfI	GANTC	5 cut(s)	430, 730, 841, 916, 1027
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	3 cut(s)	212, 1150, 1230
Hpy166II	GTNNAC	2 cut(s)	665, 1238
Hpy188I	TCNGA	2 cut(s)	908, 915
Hpy8I	GTNNAC	2 cut(s)	665, 1238
HpyAV	CCTTC	2 cut(s)	76, 746
HpyCH4III	ACNGT	5 cut(s)	291, 497, 695, 851, 1261
HpyCH4V	TGCA	7 cut(s)	113, 320, 725, 807, 1064, 1092, 1168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	630
HpyF3I	CTNAG	5 cut(s)	53, 798, 905, 1327, 1351
Hsp92I	GRCGYC	1 cut(s)	487
HspAI	GCGC	1 cut(s)	487
KasI	GGCGCC	1 cut(s)	486
Kpn2I	TCCGGA	1 cut(s)	735
Ksp22I	TGATCA	2 cut(s)	184, 340
Kzo9I	GATC	3 cut(s)	17, 184, 340
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	2 cut(s)	4, 1061
Lsp1109I	GCAGC	2 cut(s)	167, 332
LweI	GCATC	2 cut(s)	100, 1197
MaeI	CTAG	6 cut(s)	77, 539, 858, 1040, 1076, 1295
MaeIII	GTNAC	2 cut(s)	236, 1261
MalI	GATC	3 cut(s)	19, 186, 342
MboI	GATC	3 cut(s)	17, 184, 340
MboII	GAAGA	7 cut(s)	49, 345, 392, 425, 610, 1028, 1109
MhlI	GDGCHC	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	1279
MnlI	CCTC	8 cut(s)	138, 513, 635, 757, 793, 796, 957, 1336
MroI	TCCGGA	1 cut(s)	735
MseI	TTAA	7 cut(s)	105, 216, 560, 720, 1176, 1232, 1248
MslI	CAYNNNNRTG	1 cut(s)	1140
MspCI	CTTAAG	1 cut(s)	1247
MspI	CCGG	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	487
NdeII	GATC	3 cut(s)	17, 184, 340
NlaIV	GGNNCC	4 cut(s)	6, 308, 367, 488
PceI	AGGCCT	1 cut(s)	1044
PciSI	GCTCTTC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	430, 730, 841, 916, 1027
PkrI	GCNGC	2 cut(s)	157, 322
PluTI	GGCGCC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	4 cut(s)	6, 308, 367, 488
PspPI	GGNCC	2 cut(s)	365, 944
RsaI	GTAC	3 cut(s)	149, 293, 348
RsaNI	GTAC	3 cut(s)	148, 292, 347
RseI	CAYNNNNRTG	1 cut(s)	1140
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	7 cut(s)	105, 216, 560, 720, 1176, 1232, 1248
SatI	GCNGC	2 cut(s)	156, 321
Sau3AI	GATC	3 cut(s)	17, 184, 340
Sau96I	GGNCC	2 cut(s)	365, 944
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	2 cut(s)	100, 1197
SfcI	CTRYAG	1 cut(s)	493
SfoI	GGCGCC	1 cut(s)	488
SinI	GGWCC	2 cut(s)	365, 944
SmiMI	CAYNNNNRTG	1 cut(s)	1140
SmlI	CTYRAG	2 cut(s)	671, 1247
SmoI	CTYRAG	2 cut(s)	671, 1247
SpeI	ACTAGT	1 cut(s)	1294
SseBI	AGGCCT	1 cut(s)	1044
SsiI	CCGC	1 cut(s)	631
SspDI	GGCGCC	1 cut(s)	486
SspI	AATATT	2 cut(s)	334, 895
SspMI	CTAG	6 cut(s)	77, 539, 858, 1040, 1076, 1295
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	5 cut(s)	291, 497, 695, 851, 1261
TaqI	TCGA	5 cut(s)	16, 69, 224, 777, 846
TatI	WGTACW	2 cut(s)	291, 346
TfiI	GAWTC	5 cut(s)	430, 730, 841, 916, 1027
Tru1I	TTAA	7 cut(s)	105, 216, 560, 720, 1176, 1232, 1248
Tru9I	TTAA	7 cut(s)	105, 216, 560, 720, 1176, 1232, 1248
TscAI	CASTG	3 cut(s)	120, 690, 1018
TseI	GCWGC	2 cut(s)	155, 320
TspDTI	ATGAA	5 cut(s)	210, 425, 524, 760, 1204
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	3 cut(s)	120, 690, 1018
Vha464I	CTTAAG	1 cut(s)	1247
VpaK11BI	GGWCC	2 cut(s)	365, 944
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	9 cut(s)	84, 203, 575, 592, 758, 872, 986, 1080, 1220
XbaI	TCTAGA	2 cut(s)	76, 538
XspI	CTAG	6 cut(s)	77, 539, 858, 1040, 1076, 1295
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.