Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

156285 .. 158993

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCACCAAAAGCCAGACTCCCGAGAAAGACCCGGAACCCCGATTTGATTCGCGGGGTGGGTAAGTTCTCCAGGTCCAAGATGTACCACAAGCGCGGCCTTTGGGCCATCAAGGCCAAAAACGGCGGCGTATTCCCACGCCATGACCCCAAGCCAGCGGCTGAGACCCCAACCCAGAAACCCCCTAAGTTCTACCCTGCCGACGACGTCAAGAAGCCTCTCGTCAACAAGCGCAAGCCCAAGCCTACCAACCTCAGAGCGAGTATTACTCCTGGCACGGTGTTGATTATATTAGCTGGAAGGTTTAAGGGAAAGAGAGTTATTTTTCTTAAGCAGCTTACATCTGGATTGCTTCTCGTTACTGGGCCATTCAAAATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTATGTGATTGCCACTTCCACCAAGGTTGACATTTCTGGGGTGAATGTAGAAAAGTTTGATGACAAATATTTTGCAAAGGAAGTGGAGAAGAAGAAAAAGAAGGGAGAGGGAGAATTTTTTGAGGCAGATAAGGAGGAAAAGAATGTCGTCCCGCAAGGAAGGAAAGACGATCAGAAGAGCGTGGATGCTTCATTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCGAGATTCTCTCTTAAGTCAGGCATGAAGCCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.12

Weight (kDa)

10.27

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	2 cut(s)	54, 96
AciI	CCGC	5 cut(s)	54, 96, 126, 158, 563
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	86
AflII	CTTAAG	2 cut(s)	329, 665
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	373, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	71, 271
AluBI	AGCT	4 cut(s)	296, 337, 650, 691
AluI	AGCT	4 cut(s)	296, 337, 650, 691
Alw26I	GTCTC	2 cut(s)	158, 388
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	4 cut(s)	97, 105, 114, 365
ApeKI	GCWGC	2 cut(s)	334, 650
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	96, 234
AspS9I	GGNCC	3 cut(s)	75, 105, 365
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	346, 637
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	73, 273
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	158, 388
BfrI	CTTAAG	2 cut(s)	329, 665
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	5 cut(s)	97, 127, 159, 335, 651
BlsI	GCNGC	5 cut(s)	98, 128, 160, 336, 652
Bme1390I	CCNGG	3 cut(s)	34, 73, 273
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	3 cut(s)	75, 105, 365
BmiI	GGNNCC	2 cut(s)	6, 38
BmrFI	CCNGG	3 cut(s)	34, 73, 273
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	4 cut(s)	253, 285, 646, 678
BpmI	CTGGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	73, 273
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	153, 268
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	346, 637
Bsh1236I	CGCG	2 cut(s)	54, 96
BshFI	GGCC	4 cut(s)	99, 107, 116, 367
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	545, 611
BsmAI	GTCTC	2 cut(s)	158, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	545, 611
BsnI	GGCC	4 cut(s)	99, 107, 116, 367
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	5 cut(s)	54, 96, 126, 158, 563
BspANI	GGCC	4 cut(s)	99, 107, 116, 367
BspCNI	CTCAG	2 cut(s)	154, 267
BspFNI	CGCG	2 cut(s)	54, 96
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	6, 38
BspQI	GCTCTTC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	2 cut(s)	329, 665
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	580
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	73, 273
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	2 cut(s)	329, 665
BstC8I	GCNNGC	2 cut(s)	156, 236
BstDEI	CTNAG	4 cut(s)	162, 186, 254, 646
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	2 cut(s)	54, 96
BstHHI	GCGC	2 cut(s)	96, 234
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	2 cut(s)	158, 388
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
BstNI	CCWGG	2 cut(s)	73, 273
BstSCI	CCNGG	3 cut(s)	32, 71, 271
BstUI	CGCG	2 cut(s)	54, 96
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	1 cut(s)	644
BsuRI	GGCC	4 cut(s)	99, 107, 116, 367
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	156, 236
CaiI	CAGNNNCTG	1 cut(s)	161
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	2 cut(s)	96, 234
Cfr13I	GGNCC	3 cut(s)	75, 105, 365
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 474, 509
CviAII	CATG	3 cut(s)	143, 676, 686
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	162, 186, 254, 646
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	71, 271
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	146, 679, 689
FaiI	YATR	6 cut(s)	144, 290, 414, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	545, 611
FatI	CATG	3 cut(s)	142, 675, 685
FauI	CCCGC	2 cut(s)	47, 570
Fnu4HI	GCNGC	5 cut(s)	97, 127, 159, 335, 651
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	5 cut(s)	97, 127, 159, 335, 651
GlaI	GCGC	2 cut(s)	95, 233
GluI	GCNGC	5 cut(s)	97, 127, 159, 335, 651
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	99, 107, 116, 367
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	2 cut(s)	96, 234
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	146, 679, 689
Hin6I	GCGC	2 cut(s)	94, 232
HinP1I	GCGC	2 cut(s)	94, 232
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HinfI	GANTC	4 cut(s)	18, 49, 403, 657
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	2 cut(s)	257, 585
Hpy188III	TCNNGA	4 cut(s)	22, 211, 345, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	3 cut(s)	294, 505, 564
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	207, 397
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
HpyF3I	CTNAG	4 cut(s)	162, 186, 254, 646
HpySE526I	ACGT	2 cut(s)	207, 397
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	146, 679, 689
HspAI	GCGC	2 cut(s)	94, 232
Kzo9I	GATC	1 cut(s)	580
LguI	GCTCTTC	1 cut(s)	581
Lsp1109I	GCAGC	2 cut(s)	346, 637
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	2 cut(s)	207, 397
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	4 cut(s)	511, 514, 598, 649
MluCI	AATT	2 cut(s)	375, 524
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	228, 263, 511, 526, 538, 613, 693
MseI	TTAA	4 cut(s)	306, 330, 378, 666
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	2 cut(s)	329, 665
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	3 cut(s)	34, 73, 273
MvaI	CCWGG	2 cut(s)	73, 273
MvnI	CGCG	2 cut(s)	54, 96
MwoI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	3 cut(s)	146, 679, 689
NlaIV	GGNNCC	2 cut(s)	6, 38
PagI	TCATGA	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	49, 403, 657
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	98, 128, 160, 336, 652
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	71, 271
PspGI	CCWGG	2 cut(s)	71, 271
PspN4I	GGNNCC	2 cut(s)	6, 38
PspPI	GGNCC	3 cut(s)	75, 105, 365
PstNI	CAGNNNCTG	1 cut(s)	161
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	4 cut(s)	306, 330, 378, 666
SatI	GCNGC	5 cut(s)	97, 127, 159, 335, 651
Sau3AI	GATC	1 cut(s)	580
Sau96I	GGNCC	3 cut(s)	75, 105, 365
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	34, 73, 273
SfaNI	GCATC	1 cut(s)	586
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	329, 665
SmoI	CTYRAG	2 cut(s)	329, 665
Sse9I	AATT	2 cut(s)	375, 524
SsiI	CCGC	5 cut(s)	54, 96, 126, 158, 563
SspI	AATATT	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	32, 71, 271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	210, 400
TasI	AATT	2 cut(s)	375, 524
TauI	GCSGC	3 cut(s)	99, 129, 161
TfiI	GAWTC	3 cut(s)	49, 403, 657
Tru1I	TTAA	4 cut(s)	306, 330, 378, 666
Tru9I	TTAA	4 cut(s)	306, 330, 378, 666
TseI	GCWGC	2 cut(s)	334, 650
TspDTI	ATGAA	2 cut(s)	591, 692
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	2 cut(s)	329, 665
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	524
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.