Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

696633 .. 698978

Gene Structure 2346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCCGAAGCAGAGGACCCCAAAGGTGACCCGAAACCCAGATCTGATTAGAGGGATTGGGAAATACTCGAGGTCGAAGATGTACCACAAGCGAGGGCTTTGGGCTATCAAGGCCAAAAACGGCGGCGCTTTCCCTCGCCACGACAAGAAGCCCGCGGCTGACGTCCCTGCTGTGAAGCCGCCTAAGTTTTACCCCGCCGATGATGTCAAGAAGCCACTCGTCAACAAGCGCAAGCCCAAACCCACAAAGCTCAGAAATAGCATTACTCCTGGTACTGTGTTGATCCTTCTTGCTGGGAGGTTCAAGGGGAAGAGGGTTGTGTTTCTGAAGCAGCTCTCATCTGGCTTGCTTTTGGTCACTGGACCATTCAAGATTAACGGTGTTCCTCTTAGACGTGTGAACCAAGCTTACGTGATTGGAACCTCAACCAAGGTTGACATCTCTGGGGTTAACGTGGATAAGTTTGATGACAAGTACTTTGCAAAGGAAGTCCAGAAGAAGAAAAAGAAGGGTGAAGGCGAGTTCTTTGAAGCAGAGAAAGAGGAGAAAACTGTACTTTCACAGGGGAAAAAAGATGACCAGAAGGCTGTTGATACACCATTGATTAAATCCATCGAGGGAGTTTCAGATTTGAAGACTTATTTGGCTGCAAGGTTTTCTCTTAAGCAAGGCATGAAGCCTCACGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

26.07

Weight (kDa)

10.25

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	158
AciI	CCGC	5 cut(s)	126, 156, 158, 182, 198
AclWI	GGATC	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	2 cut(s)	5, 165
AfaI	GTAC	4 cut(s)	86, 277, 479, 558
AflII	CTTAAG	1 cut(s)	665
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	307, 373, 533, 637
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	4 cut(s)	253, 337, 410, 691
AluI	AGCT	4 cut(s)	253, 337, 410, 691
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	334, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspLEI	GCGC	3 cut(s)	7, 131, 234
AspS9I	GGNCC	2 cut(s)	18, 365
AsuHPI	GGTGA	2 cut(s)	40, 527
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	18, 365
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	346, 637
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	700
BfoI	RGCGCY	2 cut(s)	8, 132
BfrI	CTTAAG	1 cut(s)	665
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	5 cut(s)	127, 159, 182, 335, 651
BlsI	GCNGC	5 cut(s)	128, 160, 183, 336, 652
BmcAI	AGTACT	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	18, 365
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	18, 365
BmiI	GGNNCC	3 cut(s)	6, 20, 424
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	2 cut(s)	5, 165
BsaJI	CCNNGG	2 cut(s)	156, 432
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	156, 432
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	346, 637
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	43, 285
BspACI	CCGC	5 cut(s)	126, 156, 158, 182, 198
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	6, 20, 424
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	156, 432
BssMI	GATC	2 cut(s)	43, 285
BssNI	GRCGYC	2 cut(s)	5, 165
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	280, 383, 556
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	2 cut(s)	5, 165
BstAFI	CTTAAG	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	156, 236, 350
BstDEI	CTNAG	3 cut(s)	186, 254, 392
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	28
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	2 cut(s)	8, 132
BstHHI	GCGC	3 cut(s)	7, 131, 234
BstKTI	GATC	2 cut(s)	46, 288
BstMBI	GATC	2 cut(s)	43, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 688
BstNI	CCWGG	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	156, 236, 350
CfoI	GCGC	3 cut(s)	7, 131, 234
Cfr13I	GGNCC	2 cut(s)	18, 365
Cfr42I	CCGCGG	1 cut(s)	159
Csp6I	GTAC	4 cut(s)	85, 276, 478, 557
CviAII	CATG	1 cut(s)	676
CviQI	GTAC	4 cut(s)	85, 276, 478, 557
DdeI	CTNAG	3 cut(s)	186, 254, 392
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	45, 287
DpnII	GATC	2 cut(s)	43, 285
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	18, 365
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	679
FaiI	YATR	1 cut(s)	677
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	675
FauI	CCCGC	2 cut(s)	163, 205
Fnu4HI	GCNGC	5 cut(s)	127, 159, 182, 335, 651
Fsp4HI	GCNGC	5 cut(s)	127, 159, 182, 335, 651
FspBI	CTAG	1 cut(s)	700
GlaI	GCGC	3 cut(s)	6, 130, 233
GluI	GCNGC	5 cut(s)	127, 159, 182, 335, 651
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	2 cut(s)	8, 132
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	3 cut(s)	7, 131, 234
Hin1I	GRCGYC	2 cut(s)	5, 165
Hin1II	CATG	1 cut(s)	679
Hin6I	GCGC	3 cut(s)	5, 129, 232
HinP1I	GCGC	3 cut(s)	5, 129, 232
HincII	GTYRAC	3 cut(s)	226, 439, 454
HindII	GTYRAC	3 cut(s)	226, 439, 454
HindIII	AAGCTT	1 cut(s)	408
HpaI	GTTAAC	1 cut(s)	454
HphI	GGTGA	2 cut(s)	40, 527
Hpy166II	GTNNAC	4 cut(s)	226, 403, 439, 454
Hpy188I	TCNGA	4 cut(s)	48, 257, 330, 631
Hpy188III	TCNNGA	4 cut(s)	211, 373, 496, 686
Hpy8I	GTNNAC	4 cut(s)	226, 403, 439, 454
HpyAV	CCTTC	4 cut(s)	299, 505, 512, 580
HpyCH4III	ACNGT	3 cut(s)	280, 383, 556
HpyCH4IV	ACGT	4 cut(s)	165, 397, 414, 456
HpyCH4V	TGCA	2 cut(s)	485, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 688
HpyF3I	CTNAG	3 cut(s)	186, 254, 392
HpySE526I	ACGT	4 cut(s)	165, 397, 414, 456
Hsp92I	GRCGYC	2 cut(s)	5, 165
Hsp92II	CATG	1 cut(s)	679
HspAI	GCGC	3 cut(s)	5, 129, 232
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	43, 285
Lsp1109I	GCAGC	2 cut(s)	346, 637
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	4 cut(s)	165, 397, 414, 456
MaeIII	GTNAC	2 cut(s)	28, 358
MalI	GATC	2 cut(s)	45, 287
MboI	GATC	2 cut(s)	43, 285
MboII	GAAGA	5 cut(s)	91, 325, 511, 514, 649
MflI	RGATCY	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	5
MseI	TTAA	4 cut(s)	378, 453, 609, 666
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	113, 688
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	43, 285
NlaIII	CATG	1 cut(s)	679
NlaIV	GGNNCC	3 cut(s)	6, 20, 424
NmuCI	GTSAC	2 cut(s)	28, 358
PaeR7I	CTCGAG	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	128, 160, 183, 336, 652
PluTI	GGCGCC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	6, 20, 424
PspPI	GGNCC	2 cut(s)	18, 365
PspPPI	RGGWCCY	1 cut(s)	18
PspXI	VCTCGAGB	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	4 cut(s)	86, 277, 479, 558
RsaNI	GTAC	4 cut(s)	85, 276, 478, 557
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	4 cut(s)	378, 453, 609, 666
SatI	GCNGC	5 cut(s)	127, 159, 182, 335, 651
Sau3AI	GATC	2 cut(s)	43, 285
Sau96I	GGNCC	2 cut(s)	18, 365
ScaI	AGTACT	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	273
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	18, 365
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 665
SmoI	CTYRAG	2 cut(s)	70, 665
SsiI	CCGC	5 cut(s)	126, 156, 158, 182, 198
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	700
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	280, 383, 556
TaiI	ACGT	4 cut(s)	168, 400, 417, 459
TaqI	TCGA	3 cut(s)	71, 77, 618
TatI	WGTACW	2 cut(s)	477, 556
TauI	GCSGC	3 cut(s)	129, 161, 184
Tru1I	TTAA	4 cut(s)	378, 453, 609, 666
Tru9I	TTAA	4 cut(s)	378, 453, 609, 666
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	28, 358
TseI	GCWGC	2 cut(s)	334, 650
Tsp45I	GTSAC	2 cut(s)	28, 358
TspDTI	ATGAA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	18, 365
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	700
ZraI	GACGTC	1 cut(s)	166
ZrmI	AGTACT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.