Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

36643158 .. 36645769

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1311200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGCCGGAGCCGAGTATTGCAGGGGTGGTCAGAAACCCAGATCTGATTAGAGGGATTGGAAAATACTCGAGATCCATGATGTACCACAAGCGAGGACTTTGGGCTATCAAGGCCATTAACGGCGGCGTTTTCCCCCGCCACGATAAGAAAGCAGCCGCCGTCGCCCCGGCAGTCAAGCCTCCTAAGTTTTACCCCGCCGACGATGTCAAGAAGCCTCTCGTCAACAAGCGCAAGGCCAAGCCCACAAAGCTCAGGGCTAGCATTACTCCTGGTACCGTGTTGATCATTCTTGCCGGGAGGTTCATGGGGAAGAGGGTTGTGTTTCTGAAGCAGCTTTCATCTGGCTTGCTTTTGGTCACTGGACCATTCAAAATTAACGGTGTTCCTCTAAGACGTGTGAACCAGTCTTACGTGATTGGAACTTCAACTAAGATTGACATCTCTGGGGTTAATGTGGATAAGTTTGATGACAAGTATTTTGCAAAGGAAGTCCAGAAGAAAAAGAAGAAGGGAGAAGGCGAATTCCTTGAAGTGGAGACCGAGGACAAAAATGTAATTCCCCAGGTGAGAAAAGAAGACCAGAAGGCTGTTGATACACCCTTGATTGAATGCATCGATACAATTGCAGATATGAAGGAATATTTGGCTGCAAGGTTTTCTCTCAAGCAAGGCATGAAGCCTCACGAGCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

25.94

Weight (kDa)

9.98

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	11 - 61	5.6e-14	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	1.4e-37	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	4, 275
AciI	CCGC	4 cut(s)	126, 139, 159, 198
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	86, 277
AfiI	CCNNNNNNNGG	1 cut(s)	535
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	373, 429, 533, 611
AjiI	CACGTC	1 cut(s)	398
AjnI	CCWGG	2 cut(s)	271, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	114, 237
ApeKI	GCWGC	3 cut(s)	155, 334, 650
ApoI	RAATTY	1 cut(s)	524
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	7, 234
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	170, 298
AsuHPI	GGTGA	1 cut(s)	580
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	4, 275
BauI	CACGAG	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	167, 346, 637
BceAI	ACGGC	2 cut(s)	139, 146
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	2 cut(s)	273, 566
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	170, 298
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	261, 700
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	5 cut(s)	127, 156, 159, 335, 651
BlsI	GCNGC	5 cut(s)	128, 157, 160, 336, 652
Bme1390I	CCNGG	4 cut(s)	170, 273, 298, 566
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	3 cut(s)	6, 12, 277
BmrFI	CCNGG	4 cut(s)	170, 273, 298, 566
BmsI	GCATC	1 cut(s)	624
BmtI	GCTAGC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	170, 298
Bsa29I	ATCGAT	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	415
BsaBI	GATNNNNATC	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	168, 543, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	2 cut(s)	367, 406
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	273, 566
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	168, 543, 564
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	2 cut(s)	367, 406
BseXI	GCAGC	3 cut(s)	167, 346, 637
BshFI	GGCC	2 cut(s)	116, 239
BshNI	GGYRCC	2 cut(s)	4, 275
BshVI	ATCGAT	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	8, 170, 297
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	116, 239
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	43, 74, 285
BspACI	CCGC	4 cut(s)	126, 139, 159, 198
BspANI	GGCC	2 cut(s)	116, 239
BspCNI	CTCAG	1 cut(s)	267
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	6, 12, 277
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	69
BspT107I	GGYRCC	2 cut(s)	4, 275
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	367, 406
BssECI	CCNNGG	3 cut(s)	168, 543, 564
BssMI	GATC	3 cut(s)	43, 74, 285
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	273, 566
Bst4CI	ACNGT	2 cut(s)	280, 383
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	262, 350
BstDEI	CTNAG	4 cut(s)	186, 254, 392, 432
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 234
BstKTI	GATC	3 cut(s)	46, 77, 288
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	3 cut(s)	43, 74, 285
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 164, 250, 688
BstNI	CCWGG	2 cut(s)	273, 566
BstSCI	CCNGG	4 cut(s)	168, 271, 296, 564
BstV1I	GCAGC	3 cut(s)	167, 346, 637
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	2 cut(s)	43, 74
BstYI	RGATCY	2 cut(s)	43, 74
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	116, 239
BsuTUI	ATCGAT	1 cut(s)	618
BtrI	CACGTC	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	262, 350
CfoI	GCGC	2 cut(s)	7, 234
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	2 cut(s)	85, 276
CviAII	CATG	3 cut(s)	79, 307, 676
CviQI	GTAC	2 cut(s)	85, 276
DdeI	CTNAG	4 cut(s)	186, 254, 392, 432
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	45, 76, 287
DpnII	GATC	3 cut(s)	43, 74, 285
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	271, 564
EcoT22I	ATGCAT	1 cut(s)	617
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	3 cut(s)	82, 310, 679
FaiI	YATR	4 cut(s)	80, 308, 635, 677
FatI	CATG	3 cut(s)	78, 306, 675
FauI	CCCGC	2 cut(s)	146, 205
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	127, 156, 159, 335, 651
Fsp4HI	GCNGC	5 cut(s)	127, 156, 159, 335, 651
FspBI	CTAG	2 cut(s)	261, 700
GlaI	GCGC	2 cut(s)	6, 233
GluI	GCNGC	5 cut(s)	127, 156, 159, 335, 651
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	116, 239
HapII	CCGG	3 cut(s)	8, 170, 297
HhaI	GCGC	2 cut(s)	7, 234
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	82, 310, 679
Hin6I	GCGC	2 cut(s)	5, 232
HinP1I	GCGC	2 cut(s)	5, 232
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	8, 170, 297
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	2 cut(s)	226, 403
Hpy188I	TCNGA	3 cut(s)	35, 48, 330
Hpy188III	TCNNGA	4 cut(s)	72, 211, 496, 686
Hpy8I	GTNNAC	2 cut(s)	226, 403
Hpy99I	CGWCG	2 cut(s)	167, 206
HpyAV	CCTTC	4 cut(s)	505, 512, 580, 631
HpyCH4III	ACNGT	2 cut(s)	280, 383
HpyCH4IV	ACGT	2 cut(s)	397, 414
HpyCH4V	TGCA	5 cut(s)	23, 485, 615, 629, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 164, 250, 688
HpyF3I	CTNAG	4 cut(s)	186, 254, 392, 432
HpySE526I	ACGT	2 cut(s)	397, 414
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	82, 310, 679
HspAI	GCGC	2 cut(s)	5, 232
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	43, 74, 285
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	167, 346, 637
LweI	GCATC	1 cut(s)	624
MaeI	CTAG	2 cut(s)	261, 700
MaeII	ACGT	2 cut(s)	397, 414
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	45, 76, 287
MboI	GATC	3 cut(s)	43, 74, 285
MboII	GAAGA	4 cut(s)	325, 511, 520, 590
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	2 cut(s)	43, 74
MluCI	AATT	4 cut(s)	375, 524, 558, 624
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	9 cut(s)	47, 89, 192, 228, 294, 309, 399, 538, 693
Mph1103I	ATGCAT	1 cut(s)	617
MseI	TTAA	3 cut(s)	120, 378, 453
MspI	CCGG	3 cut(s)	8, 170, 297
MspR9I	CCNGG	4 cut(s)	170, 273, 298, 566
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	273, 566
MwoI	GCNNNNNNNGC	4 cut(s)	113, 164, 250, 688
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	170, 298
NdeII	GATC	3 cut(s)	43, 74, 285
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	82, 310, 679
NlaIV	GGNNCC	3 cut(s)	6, 12, 277
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	70
PctI	GAATGC	1 cut(s)	617
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	128, 157, 160, 336, 652
PluTI	GGCGCC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	271, 564
PspGI	CCWGG	2 cut(s)	271, 564
PspN4I	GGNNCC	3 cut(s)	6, 12, 277
PspPI	GGNCC	1 cut(s)	365
PsrI	GAACNNNNNNTAC	2 cut(s)	395, 427
PsuI	RGATCY	2 cut(s)	43, 74
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	86, 277
RsaNI	GTAC	2 cut(s)	85, 276
SaqAI	TTAA	3 cut(s)	120, 378, 453
SatI	GCNGC	5 cut(s)	127, 156, 159, 335, 651
Sau3AI	GATC	3 cut(s)	43, 74, 285
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	4 cut(s)	170, 273, 298, 566
SetI	ASST	8 cut(s)	255, 305, 339, 400, 417, 570, 659, 693
SfaNI	GCATC	1 cut(s)	624
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	365
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	70, 665
SmoI	CTYRAG	2 cut(s)	70, 665
Sse9I	AATT	4 cut(s)	375, 524, 558, 624
SsiI	CCGC	4 cut(s)	126, 139, 159, 198
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	644
SspMI	CTAG	2 cut(s)	261, 700
StyD4I	CCNGG	4 cut(s)	168, 271, 296, 564
TaaI	ACNGT	2 cut(s)	280, 383
TaiI	ACGT	2 cut(s)	400, 417
TaqI	TCGA	2 cut(s)	71, 618
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	4 cut(s)	375, 524, 558, 624
TauI	GCSGC	2 cut(s)	129, 161
Tru1I	TTAA	3 cut(s)	120, 378, 453
Tru9I	TTAA	3 cut(s)	120, 378, 453
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	3 cut(s)	155, 334, 650
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	295, 330, 650, 692
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	2 cut(s)	261, 700
Zsp2I	ATGCAT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.