Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Forward (+)

5357933 .. 5359740

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGCAAAAGCAAGAAACCCTCGAAAGACCCGAAACCCAGATCTGGTTCGTGGGGTGGGTAAATTCTCGAGGTCCAAAATGTACCACAAGCGTGGTCTCTGGGCTATCAAGGCCAAAAACGGCGGCGTTTTCCCATGCCATGACCCGAAGCCGGCGCCCGAGACCGCACCCGAGAAGCCCCCGAAGTTTTACCCCGCTGACGACGTCAAGAAGCCACTCGTCAACAAACGCAAGCCCAAACCTACCAAGCTCAGGGCAAGTATTACACCAGGGACGGTGTTGATTATATTGGCTGGGAGGTTTAAGGGCAAGAGAGTTGTTTTTCTTAAGCAGCTTCCATCTGGGTTGCTTCTTGTTACTGGGCCCTGTAAAATTAATGGTGTTCCTTTGAGACGCGTTAATCAGTCTTATGTGATTGGCACTTCCACCAAGGTTGACATTTCTGGGGTGAATGTAGAAAAGTTTGATGACAAATATTTTGCAAAGGAAGTTGAAAAGAAGAAGAAGAAGGGCGAGGGAGAGTTTTTTGAGGCCGAGAAGGAGGAAAAGAGTGTGCTCCCACAAGGAAGGAAAGATGAACAGAAGAGTGTGGATGCATCATTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCGGCGAGGTTCTCTCTGAAGACAGGCATGAAGCCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

234

Amino Acids

25.99

Weight (kDa)

10.12

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	157
AccII	CGCG	1 cut(s)	399
AciI	CCGC	4 cut(s)	126, 168, 198, 650
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	158, 207
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	497, 637
AjnI	CCWGG	1 cut(s)	271
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	253, 337, 691
AluI	AGCT	3 cut(s)	253, 337, 691
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	3 cut(s)	104, 158, 388
Ama87I	CYCGRG	3 cut(s)	70, 161, 173
AoxI	GGCC	3 cut(s)	114, 365, 534
ApaI	GGGCCC	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	5, 334
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	3 cut(s)	75, 365, 366
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	3 cut(s)	70, 161, 173
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	644, 674
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	3 cut(s)	104, 158, 388
BfoI	RGCGCY	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	4 cut(s)	6, 127, 335, 651
BlsI	GCNGC	4 cut(s)	7, 128, 336, 652
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	3 cut(s)	70, 161, 173
BmgT120I	GGNCC	3 cut(s)	75, 365, 366
BmiI	GGNNCC	2 cut(s)	159, 367
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	2 cut(s)	586, 608
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	644, 674
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
Bpu10I	CCTNAGC	1 cut(s)	254
BsaHI	GRCGYC	2 cut(s)	158, 207
BsaI	GGTCTC	2 cut(s)	104, 158
BsaJI	CCNNGG	2 cut(s)	272, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 154, 255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	272, 432
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	116, 367, 536
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	3 cut(s)	70, 161, 173
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	3 cut(s)	46, 154, 255
BsmAI	GTCTC	3 cut(s)	104, 158, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	3 cut(s)	116, 367, 536
Bso31I	GGTCTC	2 cut(s)	104, 158
BsoBI	CYCGRG	3 cut(s)	70, 161, 173
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	369, 561
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	4 cut(s)	126, 168, 198, 650
BspANI	GGCC	3 cut(s)	116, 367, 536
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	159, 367
BspT107I	GGYRCC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	2 cut(s)	104, 158
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	272, 432
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	2 cut(s)	158, 207
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	581
BstACI	GRCGYC	2 cut(s)	158, 207
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	156, 236
BstDEI	CTNAG	2 cut(s)	254, 646
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	3 cut(s)	104, 158, 388
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	2 cut(s)	644, 674
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	116, 367, 536
BtsCI	GGATG	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	156, 236
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	3 cut(s)	75, 365, 366
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	4 cut(s)	138, 143, 676, 686
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	254, 646
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	2 cut(s)	104, 158
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	686
Eco88I	CYCGRG	3 cut(s)	70, 161, 173
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	369
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	4 cut(s)	141, 146, 679, 689
FaiI	YATR	7 cut(s)	139, 144, 290, 414, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	4 cut(s)	137, 142, 675, 685
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	4 cut(s)	6, 127, 335, 651
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	4 cut(s)	6, 127, 335, 651
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	4 cut(s)	6, 127, 335, 651
GsaI	CCCAGC	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	3 cut(s)	116, 367, 536
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	158, 207
Hin1II	CATG	4 cut(s)	141, 146, 679, 689
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	2 cut(s)	226, 439
HindII	GTYRAC	2 cut(s)	226, 439
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	2 cut(s)	226, 439
Hpy188I	TCNGA	1 cut(s)	666
Hpy188III	TCNNGA	3 cut(s)	70, 211, 686
Hpy8I	GTNNAC	2 cut(s)	226, 439
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	505, 535, 564
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	8, 485, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
HpyF3I	CTNAG	2 cut(s)	254, 646
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	2 cut(s)	158, 207
Hsp92II	CATG	4 cut(s)	141, 146, 679, 689
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	586, 608
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	6 cut(s)	514, 517, 520, 598, 649, 679
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	369, 561
MluCI	AATT	2 cut(s)	65, 375
MluI	ACGCGT	1 cut(s)	397
Mly113I	GGCGCC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	33, 66, 294, 511, 526, 538, 613, 648, 693
Mph1103I	ATGCAT	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	4 cut(s)	306, 330, 378, 402
MslI	CAYNNNNRTG	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	11, 113, 688
NaeI	GCCGGC	1 cut(s)	156
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	141, 146, 679, 689
NlaIV	GGNNCC	2 cut(s)	159, 367
NmeAIII	GCCGAG	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	70
PagI	TCATGA	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	7, 128, 336, 652
PluTI	GGCGCC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	159, 367
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	75, 365, 366
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	306, 330, 378, 402
SatI	GCNGC	4 cut(s)	6, 127, 335, 651
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	3 cut(s)	75, 365, 366
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	369, 561
SetI	ASST	9 cut(s)	77, 210, 247, 255, 305, 339, 438, 659, 693
SfaNI	GCATC	2 cut(s)	586, 608
SfoI	GGCGCC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	70, 329
SmoI	CTYRAG	2 cut(s)	70, 329
Sse9I	AATT	2 cut(s)	65, 375
SsiI	CCGC	4 cut(s)	126, 168, 198, 650
SspDI	GGCGCC	1 cut(s)	157
SspI	AATATT	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	25, 71
TasI	AATT	2 cut(s)	65, 375
TauI	GCSGC	2 cut(s)	129, 653
Tru1I	TTAA	4 cut(s)	306, 330, 378, 402
Tru9I	TTAA	4 cut(s)	306, 330, 378, 402
TseI	GCWGC	2 cut(s)	5, 334
TspDTI	ATGAA	2 cut(s)	594, 692
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	70
ZraI	GACGTC	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.