Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002002

Physical Location & Seq

Genomic Coordinates Reverse (-)

324991 .. 330698

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGACAGACCCTAAAAATTACAACTCCAGCGGCCTCAATAGATGGATCAACTTCATGCCTCCCCATCCACAATACTACTGCTCCGAATCCACTTCTTCTTTCAATTCCAATCCTTATCCACATCATCAGTTCTCTCATAACTTGATGTATAACAACTCCTCCTGTGTTGTTCAGAACCAACCCTCATCATCTCATGATTCTCATCTGAAAGAAGCTCTGCCTTTAATAAACAAACTAAACCCTAGAGGAGCACAATTAGAGGAAGAGGGCACAAGTCACAACCCCAAGAACAAAGCTGATGTCGATGATGATGTAGCCCTACGTATAGGCCTCCCAAGTAGTAATTATAGTATTGATCCAGGTAGTGGTGGTACGGAAGTAGATCAATCTAATGATGAATTAGGAGCAGCTGCGAGTGTGGACAGATTAAACAAGGGTCATTACTGGATTCCCACCCCTTCTCAGATTCTAAATGGCCCAACTCAATTCTCATGTCCTCTGTGCTCCAAAACCTTTAACAGACACAATAACTTGCAGAACCAACCCTCATCATCTCATGATTCTCATCTGAAAGAAGCTCTGCCTTTAATAAACAAACTAAACCCTAGAGGAGCACAATTAGAGGAAGAGGAAGAGGGCACAAGCCACAACCCCAAGAACAAAGCTGATGTCGATGATGATGTAGCCCTACGTATAGGCCTCCCAAGTAGTAATTATAGTATTGATCCAGGTAGTGGTGGTATGAAAGTAGATCAATCTAATGATGAATTAGGAGCAGCTGCGAGTGTGGACAGATTAAACAAGGGTCATTACTGGATTCCCACCCCTTCTCAGATTCTAAATGGCCCAACTCAATTCTCATGTCCTCTGTGCTCCAAAACCTTTAACAGATACAATAACTTGCAGAGCCAACCCTCATCATCTCATGATTATCATCTGAAAGAAGCTCTGCCTTTAATAAACAAACTAAACCCTAGAGGAGCACAATTAGAGGAAGAGGGCACAAGTCACAACCCCAAGAACAAAGCTGATGTCGATGATGATGTAACCCTACATATAGGCCTCCCAAGTAGTAATTATAGTATTGATCCAGGTAGTGGTGGTATGAAAGTAGATCAATCTAATGATGAATTAGGAGCAGCTGCGAGTGTGGACAGATTAAACAAGGGTCATTACTGGATTCCCACCCCTTCTCAGATTCTAAATGGCCCAACTCAATTCTCATGTCCTCTGTGCTCCAAAACCTTTAACAGATACAATAACTTGCAGAGCCAACCCTCATCATCTCATGATTATCATCTGAAAGAAGCTCTGCCTTTAATAAACAAACTAAACCCTAGAGGAGCACAATTAGAGGAAGAGGGCACAAGTCACAACCCCAAGAACAAAGCTGATGTCGATGATGATGTAACCCTACATATAGGCCTCCCAAGTAGTAATTATAGTATTGATCCAGGTAGTGGTGGTATGAAAGTAGATCAATCTAATGATGAATTAGGAGCAGCTGCGAGTGTGGACAGATTAAACAAGGGTCATTACTGGATTCCCACCCCTTCTCAGATTCTAAATGGCCCAACTCAATTCTCATGTCCTCTGTGCTCCAAAACCTTTAACAGATACAATAACTTGCAGATGCATATGTGGGGACATGGATCTCAATACAGGAAAGGACCGGACTCTCTAAAAGGAAATCAGCCCACAGCAATGCTGAGACTCCCTTGCTACTGCTGCGCACAAGGTTGCAAGCACAACATTGACCACCCAAGAGCCAGACAACTCAAGGACCTCAGAACTCTCCAAGCACATTACAAGAGAAAGCATGGGATAAGGTCCTTCATCTGCAAAAGATGTGGCAAGTCACTTGCTCTGAAAGGTGATTGGAGAACTCATGAAAAAAACTGTGGCAAGATTTGGCATTGCATTTGCGGCTCTGTATTTAAGCACAAGAGATCTCTCAAAGACCACGTTAAGTCCTTCGGTGAAGGACATGGAGCTTTCGATATCGAGTGTTTTGAAGAGGATGATGAACCAGCATCTGAAATAGAACACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

684

Amino Acids

75.76

Weight (kDa)

6.45

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	574 - 608	2.9e-15	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	612 - 635	2.1e-09	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18540 AT1G74050 AT1G74060
fragaria_vesca	FvH4_7g00540
malus_domestica	MD02G1311200.v1.1 MD02G1316700.v1.1 MD07G1005300.v1.1 MD12G1062000.v1.1 MD14G1062400.v1.1 MD15G1201600.v1.1
prunus_persica	Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.2G007500_v2.0.a1 Prupe.3G002200_v2.0.a1 Prupe.6G171700_v2.0.a1 Prupe.7G072900_v2.0.a1
pyrus_communis	pycom02g26540 pycom07g00430 pycom12g05480 pycom14g05010 pycom15g17900
rosa_chinensis	RchiOBHm_Chr1g0314331 RchiOBHm_Chr3g0480371 RchiOBHm_Chr7g0223531
rosa_laevigata	RLG00000001959 RLG00000023488
rosa_multiflora	Rmu_sc0000343.1_g000011 Rmu_sc0002224.1_g000016 Rmu_sc0002833.1_g000007 Rmu_sc0010976.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235650 Rroxscaffold_6G00401440
rosa_rugosa	Rorug01G0001100 Rorug03G0183500 Rorug07G0218000
rosa_samantha	Rh1BG003100 Rh1CG010500 Rh1DG005600 Rh3BG267400 Rh3DG260600 Rh7AG361200 Rh7DG356600
rosa_wichuraiana	Rw1G000470 Rw3G021080 Rw7G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1732
AccB7I	CCANNNNNTGG	4 cut(s)	365, 734, 1097, 1460
AciI	CCGC	2 cut(s)	30, 1926
AclWI	GGATC	6 cut(s)	53, 350, 719, 1082, 1445, 1660
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	4 cut(s)	365, 734, 1097, 1460
AflIII	ACRYGT	1 cut(s)	2049
AgsI	TTSAA	2 cut(s)	103, 2015
AjnI	CCWGG	4 cut(s)	358, 727, 1090, 1453
Alw21I	GWGCWC	8 cut(s)	253, 506, 616, 875, 985, 1238, 1348, 1601
Alw26I	GTCTC	1 cut(s)	1705
AlwI	GGATC	6 cut(s)	53, 350, 719, 1082, 1445, 1660
AlwNI	CAGNNNCTG	1 cut(s)	2036
AoxI	GGCC	9 cut(s)	31, 328, 475, 697, 844, 1060, 1207, 1423, 1570
ApeKI	GCWGC	9 cut(s)	407, 410, 776, 779, 1139, 1142, 1502, 1505, 1728
ArsI	GACNNNNNNTTYG	8 cut(s)	285, 317, 654, 686, 1017, 1049, 1380, 1412
AspLEI	GCGC	1 cut(s)	1733
AspS9I	GGNCC	7 cut(s)	476, 845, 1208, 1571, 1670, 1783, 1830
AsuHPI	GGTGA	2 cut(s)	1886, 1991
AvaII	GGWCC	3 cut(s)	1670, 1783, 1830
BaeGI	GKGCMC	4 cut(s)	272, 641, 1004, 1367
BaeI	ACNNNNGTAYC	2 cut(s)	363, 396
Bbv12I	GWGCWC	8 cut(s)	253, 506, 616, 875, 985, 1238, 1348, 1601
BbvI	GCAGC	9 cut(s)	397, 419, 766, 788, 1129, 1151, 1492, 1514, 1715
BccI	CCATC	2 cut(s)	36, 72
BciT130I	CCWGG	4 cut(s)	360, 729, 1092, 1455
BcoDI	GTCTC	1 cut(s)	1705
BfaI	CTAG	4 cut(s)	243, 606, 975, 1338
BglII	AGATCT	1 cut(s)	1949
Bme1390I	CCNGG	4 cut(s)	360, 729, 1092, 1455
Bme18I	GGWCC	3 cut(s)	1670, 1783, 1830
BmgT120I	GGNCC	7 cut(s)	476, 845, 1208, 1571, 1670, 1783, 1830
BmrFI	CCNGG	4 cut(s)	360, 729, 1092, 1455
BmsI	GCATC	2 cut(s)	1623, 2042
BpmI	CTGGAG	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	1763
BsaAI	YACGTR	2 cut(s)	323, 692
BsaBI	GATNNNNATC	4 cut(s)	201, 564, 933, 1296
BsaWI	WCCGGW	1 cut(s)	1672
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 143, 173
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 734, 1097, 1460
Bse1I	ACTGG	4 cut(s)	449, 818, 1181, 1544
Bse3DI	GCAATG	2 cut(s)	1710, 1915
Bse8I	GATNNNNATC	4 cut(s)	201, 564, 933, 1296
BseBI	CCWGG	4 cut(s)	360, 729, 1092, 1455
BseGI	GGATG	2 cut(s)	64, 2026
BseJI	GATNNNNATC	4 cut(s)	201, 564, 933, 1296
BseLI	CCNNNNNNNGG	4 cut(s)	365, 734, 1097, 1460
BseMI	GCAATG	2 cut(s)	1710, 1915
BseMII	CTCAG	6 cut(s)	476, 845, 1208, 1571, 1700, 1801
BseNI	ACTGG	4 cut(s)	449, 818, 1181, 1544
BseRI	GAGGAG	5 cut(s)	148, 261, 624, 993, 1356
BseSI	GKGCMC	4 cut(s)	272, 641, 1004, 1367
BseXI	GCAGC	9 cut(s)	397, 419, 766, 788, 1129, 1151, 1492, 1514, 1715
BshFI	GGCC	9 cut(s)	33, 330, 477, 699, 846, 1062, 1209, 1425, 1572
BsiHKAI	GWGCWC	8 cut(s)	253, 506, 616, 875, 985, 1238, 1348, 1601
BsiSI	CCGG	1 cut(s)	1673
BslFI	GGGAC	1 cut(s)	1659
BslI	CCNNNNNNNGG	4 cut(s)	365, 734, 1097, 1460
BsmAI	GTCTC	1 cut(s)	1705
BsmFI	GGGAC	1 cut(s)	1659
BsnI	GGCC	9 cut(s)	33, 330, 477, 699, 846, 1062, 1209, 1425, 1572
BspACI	CCGC	2 cut(s)	30, 1926
BspANI	GGCC	9 cut(s)	33, 330, 477, 699, 846, 1062, 1209, 1425, 1572
BspCNI	CTCAG	6 cut(s)	475, 844, 1207, 1570, 1701, 1800
BspHI	TCATGA	5 cut(s)	193, 556, 925, 1288, 1888
BspPI	GGATC	6 cut(s)	53, 350, 719, 1082, 1445, 1660
BsrDI	GCAATG	2 cut(s)	1710, 1915
BsrI	ACTGG	4 cut(s)	449, 818, 1181, 1544
Bst2UI	CCWGG	4 cut(s)	360, 729, 1092, 1455
Bst4CI	ACNGT	1 cut(s)	1901
Bst6I	CTCTTC	6 cut(s)	258, 621, 627, 990, 1353, 2010
BstBAI	YACGTR	2 cut(s)	323, 692
BstC8I	GCNNGC	1 cut(s)	1745
BstDEI	CTNAG	6 cut(s)	462, 831, 1194, 1557, 1709, 1787
BstF5I	GGATG	2 cut(s)	64, 2026
BstHHI	GCGC	1 cut(s)	1733
BstMAI	GTCTC	1 cut(s)	1705
BstMWI	GCNNNNNNNGC	2 cut(s)	1728, 1926
BstNI	CCWGG	4 cut(s)	360, 729, 1092, 1455
BstNSI	RCATGY	1 cut(s)	2053
BstSCI	CCNGG	4 cut(s)	358, 727, 1090, 1453
BstSLI	GKGCMC	4 cut(s)	272, 641, 1004, 1367
BstSNI	TACGTA	2 cut(s)	323, 692
BstV1I	GCAGC	9 cut(s)	397, 419, 766, 788, 1129, 1151, 1492, 1514, 1715
BstX2I	RGATCY	2 cut(s)	1652, 1949
BstYI	RGATCY	2 cut(s)	1652, 1949
BsuRI	GGCC	9 cut(s)	33, 330, 477, 699, 846, 1062, 1209, 1425, 1572
BtsCI	GGATG	2 cut(s)	64, 2026
Cac8I	GCNNGC	1 cut(s)	1745
CaiI	CAGNNNCTG	1 cut(s)	2036
CciI	TCATGA	5 cut(s)	193, 556, 925, 1288, 1888
CfoI	GCGC	1 cut(s)	1733
Cfr13I	GGNCC	7 cut(s)	476, 845, 1208, 1571, 1670, 1783, 1830
Csp6I	GTAC	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	1831, 1866
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	6 cut(s)	462, 831, 1194, 1557, 1709, 1787
Eam1104I	CTCTTC	6 cut(s)	258, 621, 627, 990, 1353, 2010
EarI	CTCTTC	6 cut(s)	258, 621, 627, 990, 1353, 2010
Eco105I	TACGTA	2 cut(s)	323, 692
Eco147I	AGGCCT	4 cut(s)	330, 699, 1062, 1425
Eco32I	GATATC	1 cut(s)	2002
Eco47I	GGWCC	3 cut(s)	1670, 1783, 1830
EcoO109I	RGGNCCY	2 cut(s)	1783, 1830
EcoRII	CCWGG	4 cut(s)	358, 727, 1090, 1453
EcoRV	GATATC	1 cut(s)	2002
EcoT22I	ATGCAT	1 cut(s)	1638
FaqI	GGGAC	1 cut(s)	1659
FauNDI	CATATG	1 cut(s)	1638
FokI	GGATG	2 cut(s)	51, 2033
FspBI	CTAG	4 cut(s)	243, 606, 975, 1338
FspI	TGCGCA	1 cut(s)	1732
GlaI	GCGC	1 cut(s)	1732
GsuI	CTGGAG	1 cut(s)	10
HaeIII	GGCC	9 cut(s)	33, 330, 477, 699, 846, 1062, 1209, 1425, 1572
HapII	CCGG	1 cut(s)	1673
HhaI	GCGC	1 cut(s)	1733
Hin6I	GCGC	1 cut(s)	1731
HinP1I	GCGC	1 cut(s)	1731
HpaII	CCGG	1 cut(s)	1673
HphI	GGTGA	2 cut(s)	1886, 1991
Hpy166II	GTNNAC	4 cut(s)	421, 790, 1153, 1516
Hpy188III	TCNNGA	5 cut(s)	194, 557, 926, 1289, 1889
Hpy8I	GTNNAC	4 cut(s)	421, 790, 1153, 1516
HpyAV	CCTTC	7 cut(s)	468, 837, 1200, 1563, 1843, 1976, 1984
HpyCH4III	ACNGT	1 cut(s)	1901
HpyCH4IV	ACGT	3 cut(s)	322, 691, 1965
HpyCH4V	TGCA	8 cut(s)	535, 904, 1267, 1630, 1636, 1743, 1842, 1920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1728, 1926
HpyF3I	CTNAG	6 cut(s)	462, 831, 1194, 1557, 1709, 1787
HpySE526I	ACGT	3 cut(s)	322, 691, 1965
HspAI	GCGC	1 cut(s)	1731
Lsp1109I	GCAGC	9 cut(s)	397, 419, 766, 788, 1129, 1151, 1492, 1514, 1715
LweI	GCATC	2 cut(s)	1623, 2042
MaeI	CTAG	4 cut(s)	243, 606, 975, 1338
MaeII	ACGT	3 cut(s)	322, 691, 1965
MaeIII	GTNAC	6 cut(s)	275, 1007, 1045, 1370, 1408, 1857
MboII	GAAGA	7 cut(s)	87, 275, 638, 644, 1007, 1370, 2027
MflI	RGATCY	2 cut(s)	1652, 1949
MlyI	GAGTC	2 cut(s)	1670, 1707
Mph1103I	ATGCAT	1 cut(s)	1638
MslI	CAYNNNNRTG	1 cut(s)	1703
MspA1I	CMGCKG	5 cut(s)	30, 410, 779, 1142, 1505
MspI	CCGG	1 cut(s)	1673
MspR9I	CCNGG	4 cut(s)	360, 729, 1092, 1455
MvaI	CCWGG	4 cut(s)	360, 729, 1092, 1455
MwoI	GCNNNNNNNGC	2 cut(s)	1728, 1926
NdeI	CATATG	1 cut(s)	1638
NmuCI	GTSAC	4 cut(s)	275, 1007, 1370, 1857
NsbI	TGCGCA	1 cut(s)	1732
NsiI	ATGCAT	1 cut(s)	1638
NspI	RCATGY	1 cut(s)	2053
PagI	TCATGA	5 cut(s)	193, 556, 925, 1288, 1888
PceI	AGGCCT	4 cut(s)	330, 699, 1062, 1425
PciI	ACATGT	1 cut(s)	2049
PflMI	CCANNNNNTGG	4 cut(s)	365, 734, 1097, 1460
PleI	GAGTC	2 cut(s)	1670, 1707
PpsI	GAGTC	2 cut(s)	1670, 1707
Ppu21I	YACGTR	2 cut(s)	323, 692
PpuMI	RGGWCCY	2 cut(s)	1783, 1830
PscI	ACATGT	1 cut(s)	2049
Psp5II	RGGWCCY	2 cut(s)	1783, 1830
Psp6I	CCWGG	4 cut(s)	358, 727, 1090, 1453
PspGI	CCWGG	4 cut(s)	358, 727, 1090, 1453
PspPI	GGNCC	7 cut(s)	476, 845, 1208, 1571, 1670, 1783, 1830
PspPPI	RGGWCCY	2 cut(s)	1783, 1830
PstNI	CAGNNNCTG	1 cut(s)	2036
PsuI	RGATCY	2 cut(s)	1652, 1949
PvuII	CAGCTG	4 cut(s)	410, 779, 1142, 1505
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	1703
Sau96I	GGNCC	7 cut(s)	476, 845, 1208, 1571, 1670, 1783, 1830
SchI	GAGTC	2 cut(s)	1670, 1707
ScrFI	CCNGG	4 cut(s)	360, 729, 1092, 1455
SfaNI	GCATC	2 cut(s)	1623, 2042
SinI	GGWCC	3 cut(s)	1670, 1783, 1830
SmiMI	CAYNNNNRTG	1 cut(s)	1703
SmlI	CTYRAG	1 cut(s)	1778
SmoI	CTYRAG	1 cut(s)	1778
SnaBI	TACGTA	2 cut(s)	323, 692
SseBI	AGGCCT	4 cut(s)	330, 699, 1062, 1425
SsiI	CCGC	2 cut(s)	30, 1926
SspMI	CTAG	4 cut(s)	243, 606, 975, 1338
StuI	AGGCCT	4 cut(s)	330, 699, 1062, 1425
StyD4I	CCNGG	4 cut(s)	358, 727, 1090, 1453
TaaI	ACNGT	1 cut(s)	1901
TaiI	ACGT	3 cut(s)	325, 694, 1968
TaqI	TCGA	6 cut(s)	303, 672, 1035, 1398, 1998, 2004
TauI	GCSGC	2 cut(s)	33, 1929
TseFI	GTSAC	4 cut(s)	275, 1007, 1370, 1857
TseI	GCWGC	9 cut(s)	407, 410, 776, 779, 1139, 1142, 1502, 1505, 1728
Tsp45I	GTSAC	4 cut(s)	275, 1007, 1370, 1857
TspGWI	ACGGA	1 cut(s)	389
Van91I	CCANNNNNTGG	4 cut(s)	365, 734, 1097, 1460
VpaK11BI	GGWCC	3 cut(s)	1670, 1783, 1830
XceI	RCATGY	1 cut(s)	2053
XspI	CTAG	4 cut(s)	243, 606, 975, 1338
Zsp2I	ATGCAT	1 cut(s)	1638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.